Methylomonas paludis: KEF85_05140
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Entry
KEF85_05140 CDS
T07508
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mpad
Methylomonas paludis
Pathway
mpad03410
Base excision repair
mpad03430
Mismatch repair
mpad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KEF85_05140 (recJ)
03430 Mismatch repair
KEF85_05140 (recJ)
03440 Homologous recombination
KEF85_05140 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpad03400
]
KEF85_05140 (recJ)
DNA repair and recombination proteins [BR:
mpad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KEF85_05140 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KEF85_05140 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KEF85_05140 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
Glyco_transf_4
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
QWF71851
UniProt:
A0A975MPX6
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All DBs
Position
1112528..1114276
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AA seq
582 aa
AA seq
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MYLQGVKKQIVQRSVPGGKALLGDMDPVLQAIFRSRGVLTAAELDIALSHLPSPWLLSGM
REMVELLVSAIKQQKAISIVADFDADGATSCALAIKGLSLLGAKPPQFVVPNRFEYGYGL
TPEIVELVKQQNPDIIITVDNGISSLDGVKAAKAAGIQVLITDHHLPGPELPAADAIVNP
NLDGDKFPSRNIAGVGVMFYVLMALRIRLRELQWFEKNRVAEPNLGQLLDYVALGTVADV
VALDHVNRILVHQGLLRIRAGKCHTGIKMLTEIAGRNLANLYAADLGFALAPRLNAAGRM
NDMSLGIQCLLSDDETVARHIAQQLDGLNQDRKEVEGQMKTEAMLLLAEMKQLDEKHALP
GVCLYDASWHQGVIGILASRIKDRLHRPVIVFAPADNGDIKGSARSINGVHIRDVLSEIA
AGHPQLLSKFGGHAMAAGLTIKMHDYPHFAILFAETVAAHLEQVELEQKICSDGELDEQH
LSLAFAEQIQQAAIWGQAFPEPLFNGVFDVIQCRIVGRQHLKFVLRLPFNGLLLDAIAFF
ADQPESWLDSRKITAVYKLDINIYRGQRSLQLQLQYLEKWSR
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgcaaggcgtaaaaaaacagatagtccagcgtagcgtacccggcggtaaagcc
ctactcggcgatatggatccggtattacaagccattttccgcagccgcggagtcctgact
gccgccgaactggacatcgccttaagccatttgccgtcgccgtggctgttaagcgggatg
cgcgaaatggtggaactgctggtcagtgccataaaacagcaaaaagccatcagcattgtc
gccgattttgatgccgatggcgccaccagttgcgcgctggccatcaaaggcctcagcctg
cttggggcaaagccgccgcagtttgtagtacctaaccggtttgaatatggttacggcctg
actccggaaattgtcgagctggtcaaacagcaaaacccggatatcatcattaccgtcgat
aacggcatttccagtctggacggtgttaaagccgccaaagccgccggtatccaggtatta
atcaccgatcatcatttgcccggcccggaattgccggcagcggatgccattgttaatccc
aatctggacggtgataaatttcccagccgcaatatcgccggggtgggggtgatgttttat
gtactgatggccttaagaatccgcctgcgcgaattgcaatggtttgaaaaaaaccgtgtt
gctgaacccaatctcggccaattgctggattatgtggccctgggtacggttgccgatgta
gtggcgctggatcatgttaatcggatactggtgcatcagggtttgttgagaatccgggcc
ggcaaatgccataccggcatcaaaatgttgaccgaaattgccggccgcaatttagccaat
ctgtatgccgccgatctgggctttgccctggcaccgcgtttgaacgcagccgggcgcatg
aatgatatgagtttaggcattcaatgcctgcttagcgatgacgaaacagtggcccgccat
atcgcccaacagctggatggcctgaatcaggatagaaaggaagtcgaaggccagatgaaa
accgaagccatgctgctgctggccgaaatgaaacaactggacgagaaacatgctctgccc
ggggtttgcctgtacgatgccagctggcatcagggcgtgatcggtattctggcctcacgc
atcaaagaccggctgcatcggccggtgatcgtgtttgcgccggctgataacggtgacatc
aaaggctcggcccgctctatcaacggcgtgcatatccgtgatgtattaagcgaaatcgcc
gccggtcatccgcaattgctcagcaaattcggtggtcatgccatggccgccggcttaacc
attaaaatgcatgattatccgcattttgccatcctgtttgccgaaaccgttgccgcccat
ctggaacaagtggaactggagcaaaaaatctgctcggacggcgagctggatgaacagcat
ctgagtctggcgtttgccgagcaaatccagcaagctgccatttggggtcaggcctttccg
gagccattgtttaacggcgtatttgatgtgattcaatgccgtatcgtcggtcgccagcat
cttaaatttgtgctgcgtttaccgtttaacgggctattactggatgctattgcttttttt
gccgatcagccggaaagctggctggacagccggaaaataaccgccgtttataaacttgat
atcaatatttaccgaggccaacgcagcttgcaattacagctgcaatatctggaaaaatgg
agccgctaa
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