Mus pahari (shrew mouse): 110316077
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Entry
110316077 CDS
T05929
Symbol
Cnot4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110316077 (Cnot4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mpah03000
]
110316077 (Cnot4)
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110316077 (Cnot4)
04121 Ubiquitin system [BR:
mpah04121
]
110316077 (Cnot4)
Enzymes [BR:
mpah01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110316077 (Cnot4)
Transcription factors [BR:
mpah03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110316077 (Cnot4)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110316077 (Cnot4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110316077 (Cnot4)
Ubiquitin system [BR:
mpah04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110316077 (Cnot4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Rtf2
Nup35_RRM_2
DZR_2
zf-CCCH_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
110316077
NCBI-ProteinID:
XP_021045814
Ensembl:
MGP_PahariEiJ_G0021974
LinkDB
All DBs
Position
2:complement(54432441..54533849)
Genome browser
AA seq
713 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
PSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHSAAPTNANSLNSTFSVLPQRFPQFQ
QHRAVYNSFGFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPTQHNTGLGGIP
IADNNSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSVSW
DSPGSWTDPAIITGIPASSGNTLDSIQDDNPPHWLKSLQALTEMDGPSAASSQPHHSAPF
STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcctgatgcaaaggaagaccctgtggaatgccctctttgcatggagccc
ttggaaatagatgatattaactttttcccttgcacctgtggctaccagatatgccgattt
tgttggcatcgaattcgcactgatgagaatgggctttgtcctgcatgtagaaagccatat
ccagaagacccagcagtttacaaaccactttcccaggaagaattgcaaaggataaagaat
gagaaaaaacagaaacaaaatgagagaaaacagaaaatctcagaaaatcgaaaacatttg
gctagtgtacgtgttgtacaaaaaaaccttgtgtttgttgtaggtctgtcacagcgccta
gcagacccagaagttttaaaacgaccagagtattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcctatgcaggctcacagggtccgagtgccagtgcttat
gtaacgtatatccggtcagaagatgctctcagagcaatacagtgtgtcaacaatgtggta
gtagatggcaggacactaaaggcatctttaggtacaacaaagtactgcagttatttctta
aagaacatgcagtgcccaaagcctgactgcatgtatctacatgaattgggagatgaggca
gccagcttcacaaaagaggaaatgcaggcgggtaagcatcaagaatatgaacagaagctc
ctccaagaattatataaattaaatcccaattttcttcagctatctacgggttcagttgat
aagaataagaacaaagtgacaccattacaaaggtatgatacccccattgacaaaccttca
gattctctcagtatagggaatggtgataattcccaacagatatctaacagtgatacgcct
tcaccaccacctggtttatcaaaatccaatcctgtcatccccatcagttcatccaatcac
agtgcaaggtctccttttgaaggggcagtaacagagtcacagtcattattctcagacaat
tttcgccaccccaaccctataccaagtgggcttcctccttttcccagctctccacagaca
cccagtgattggcctacagctccagaaccacagagcctcttcacatcagaaacaatccca
gtatcatcatctacagactggcaagcagcattcggctttggttcttctaaacaaccagag
gatgacttggggtttgatccctttgatgtcactcgaaaagccttagcagacctgattgag
aaggaactatccgtccaagatcaaccttccctttctcccacatctcttcagaactcctcc
tcacacactacaaccgccaaaggtccaggctctggattcctgcattctgctgcacctaca
aatgccaactctcttaatagtaccttttcagtcttgccacagaggttccctcaatttcag
cagcaccgagcagtttataattcgttcggttttccaggccaggcagcccgctatccttgg
atggcctttccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaat
agtaatttcttggacttgaatctcccgacacagcacaacacaggtctgggagggatcccc
atagcagacaacaacagttctgtagagagtttaaatatgaaggaatggcaggacgggcta
agggcacttctacccaacattaacatcaactttggtggactgcccaattcttcttccccc
tccaacgccaaccacagtgcaccaacgtccaacactgccaccacggacagcgtgagttgg
gacagccctggcagctggacagacccagccatcatcacaggtattccagcatcttcagga
aacactttagactctattcaagacgacaatcctccacactggctaaaatccctacaggcc
ctcacagagatggacggccccagcgctgcctcatcacaaccccatcacagcgcccccttc
agcacacagatccctctgcacagagccagttggaacccctacccacctccttcaaatccc
tccagcttccactctccacccccaggtttccagacagccttcagaccccccagcaaaacc
cccacagatctgctacagagttctacactggaccgccactaa
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