Mus pahari (shrew mouse): 110337318
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Entry
110337318 CDS
T05929
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110337318 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110337318 (Cnot1)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110337318 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110337318 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
110337318
NCBI-ProteinID:
XP_021075833
Ensembl:
MGP_PahariEiJ_G0023028
LinkDB
All DBs
Position
20:complement(19891073..19975645)
Genome browser
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNSDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcaacattgtcatatgccattgataatccattgcac
taccagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtaatttttggtcttgcccttttgaattcttccagcccagat
ctcaggggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctactctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagacactacgcagagattttccccaagagcgctgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggattttg
cctgattctggaggggtagctaaaaccatgatggagagctcgctagctgacttcatgcag
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcggact
cattcaggattaacagacggtattccattacagagcatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgagggggcacaggcacacacgtggaatgtcgaggtt
ttgattgatgttcttaaagagctgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcagattcgtgacagcaaaggacttcacaatgtggtttatggc
attcaaaggggtctgggcatggaagtgtttccagtagattttatatataggccttggaaa
catgcggaaggccagctctccttcatccagcattccctgataaacccagaggtcttctgt
tttgctgactacccctgtcacactgttgccactgatattttgaaagcaccaccggaggat
gacaatcgagaaattgccacatggaaaagcttggatttgatagaatctctgctgaggctt
gccgaggttgggcagtatgagcaagtgaagcagctcttcagcttccctatcaaacactgc
ccagacatgctggtgttggccctgcttcagatcaacacctcctggcacaccctacgccat
gaactcatctcgactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcatgggcaggggcagtctccatcaattcgccaacttataatgcat
gcaatggcagaatggtacatgagaggggagcagtatgatcaggccaaattgtctcgaata
cttgacgtggcacaggacttgaaggccctgtcgatgctgctgaacggcactccatttgcc
tttgtcattgaccttgctgcactcgcttcacggcgggaatacctcaaacttgacaagtgg
ctaacagataagataagagagcatggggagccttttatacaagcatgtatgactttttta
aagagaaggtgcccttctattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctgctgaaactctagcaacaatgttggcttgtctgcaggcttgtgcaggg
agtgtttctcaggaattatcagagactattctcaccatggtcgccaattgcagtaatgta
atgaataaggccagacagccaccacctggagttatgccaaaaggtcgccctcctagtgct
agcagtttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagcatgcaaggttttcctccaaatttg
ggttctgcgttcagtacccctcagtcaccagcaaaagcatttccaccactttcaacccca
aatcaaacaacggccttcagtgggatcggagggctctcctcccagctgccagtaggtggt
cttggcacaggaagcctgactggcataggaactggagcccttggacttcctgcagtgaac
agtgatccttttgtacagaggaaattgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttccgacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagaaattgatgatgaagcaaacagttatttccagcgaatatataatcacccacca
catccaaccatgtctgttgatgaggtattagaaatgctacagagatttaaagactctaca
ataaaaagggagcgagaagtatttaactgtatgctgaggaacttatttgaagaataccga
ttttttccccagtaccctgataaagaattacatataacagcctgcttgtttggtggcata
attgaaaaaggactggtcacttacatggcattgggtctggccctgcgatatgttcttgaa
gccttacggaagccttttggatccaaaatgtattattttggtattgctgcactagataga
tttaaaaatagattaaaggactatcctcagtattgtcagcacctggcttctatcagtcac
tttatgcagtttccacatcatttgcaggagtacattgagtacggacagcagtctcgagat
cctcctgtgaaaatgcagggctctatcactacccctgggagtattgcactggctcaggcc
caggctcaggcccaggttccagcaaaagctcctcttgccggtcaggttaacacaatggta
accacctcaactaccaccactgttgctaaaacggttacagtcaccaagccaacgggagtc
agctttaagaaagatgtgccaccttctataaatacaacaaatatcgatacattgcttgtg
gccacagatcaaactgagaggattgtggagcccccagaaaatattcaagagaaaattgct
tttattttcaacaatctctcacagtcaaatatgacacagaaggttgaagagcttaaagaa
actgtgaaggaagaatttatgccttgggtttcccaatatctagttatgaaaagagtcagt
attgagccaaactttcatagcctgtattcaaactttcttgatacattgaagaatcctgaa
tttaacaagatggttctgaatgaaacctacagaaacattaaagtgctgctgacttctgat
aaagctgcagccaatttctcagatcgttctttgctgaagaacttgggacattggttagga
atgatcacattagctaaaaataaacccatcttacacacggacttggatgtgaaatctttg
ctgttagaggcttacgttaaaggacaacaagagttgctctatgtagtgccctttgttgcc
aaagttttagagtccagcattcgcagcctggtttttagaccaccaaacccctggacaatg
gcaattatgaatgtattggctgagctgcatcaggagcatgacttaaagttaaacctgaag
tttgagattgaggtgctctgtaagaaccttgcattagacatcaatgagctcaaacctgga
aacctgctaaaagataaagatcgtctgaagaacttagacgaacaactctctgctccaaag
aaagatgtcaagcagcccgaagagcttcctgccatcacaacaacaacaacttctacaaca
ccagctaccagtactacgtgtacagccacagttccaccacagccacagtacagctaccac
gacatcaatgtctactctctagcaggcctggcacctcatattactctaaaccctacaatc
cctttatttcaagctcacccacaactgaagcagtgtgtgcggcaagcaattgaacgagct
gtccaggagctagtccatccagtggtggatcgctcaattaagattgctatgactacatgc
gaacagatagtcagaaaggactttgccctggattctgaggagtctcgaatgagaatagca
gctcatcacatgatgcggaacttgacagctggaatggctatgattacttgcagggaacct
ttactgatgagcatatctaccaacctcaaaaacagctttgcctcagccctgcgtactgca
tccccacagcaaagggaaatgatggaccaggctgctgctcagttagctcaggacaactgt
gaattagcttgttgttttattcagaaaactgcagtggagaaagcaggccctgagatggac
aagagattggcaactgagtttgagctgaggaagcacgcccggcaagaaggacgtaggtac
tgtgaccctgtggtgttaacctaccaagccgagcggatgccggagcagatcaggctgaaa
gttggtggtgtggacccaaagcagctagccgtctatgaagagtttgcacgaaatgtgcct
ggcttcttacctacaaatgacttaagtcagcctactgggtttttagctcagcccatgaag
caagcttgggcaacagatgatgtggctcagatctatgataagtgcattacagaactggag
cagcatctacatgccatcccaccaactctggccatgaatcctcaagcccaggctctccga
agccttttagaggttgtagtgttgtctcggaattcgcgtgatgcgatagctgctcttgga
ttactacagaaggctgtagaaggcttattagatgccacaagtggtgctgatgctgactta
ctgctgcgatacagggaatgccacctgttggtactgaaagcactgcaggatggcagggca
tatggatcaccatggtgcaacaaacaaatcacaaggtgcctaattgaatgtcgagatgaa
tataaatataatgtggaggctgtggaattgttaattcgaaatcatttggttaacatgcag
cagtatgatcttcatcttgctcagtcgatggagaatggcttgaactacatggccgtggcg
tttgctatgcaactggtaaaaattctgctggtggatgaaaggagtgttgcccatattact
gaggcagatctgttccataccattgaaaccctcatgagaattaatgctcattccagaggc
aatgctccagaaggattgccccagctgatggaagtggtgagatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccactcagcagccgctggccgcgacagtaccaaagcattctctgcgtttgtt
ggacagatgcaccaacaaggaatacttaaaactgatgacctcataacaaggttttttcgt
ctttgcactgaaatgtgtgttgaaatcagttaccgtgctcaggcggagcagcagcacaac
cctgcggctaaccctaccatgatccgggccaagtgctaccacaacctggacgcctttgtc
cgcctcattgcattgttagtgaagcactctggggaggccaccaacactgtcaccaagatc
aacctgctcaataaggttctcggtatagtagtgggagttctccttcaggatcatgatgtt
cggcagagtgaatttcagcagcttccgtaccataggatctttatcatgctgctgttggag
ctcaatgcacccgagcatgtattggaaaccattaatttccagactcttaccgctttctgc
aatacattccacatcttgagacctactaaagctcctggctttgtatatgcttggcttgaa
ttgatttcccatcggatctttattgcaagaatgctggcacatacgccacagcagaagggg
tggcctatgtatgctcagctgttgattgatttattcaaatatttagcacctttccttaga
aatgtggaactcactaaacctatgcaaatcctctataagggtactctaagagtgctgctg
gttcttttgcatgatttcccagagttcctttgtgattaccattatgggttctgtgatgtg
atccctcctaattgtatccagttaagaaatttgatcctgagtgccttcccaagaaatatg
aggctcccagacccattcactcctaatctgaaggtggacatgttaagcgaaattaacatc
gcacctcggatcctcaccaatttcactggagtgatgccgcctcagttcaaaaaggatttg
gattcctatcttaaaactcggtcgccggtcactttcctgtctgatctgcgtagtaaccta
caggtatctaatgagcctgggaatcgctataacctccagcttatcaatgcattggtgctc
tacgtagggactcaggctatcgcacacatccacaacaagggcagcacgccatcaatgagc
accatcacccattcagcacacatggacatcttccagaacctggctgtggacctagacact
gagggccggtatctcttcttaaatgcaattgcaaaccagcttcggtacccaaacagccac
actcactacttcagctgcaccatgttgtacctttttgccgaggcgaacactgaggcaatc
caggagcagatcacaagggttctcttggaacggttgattgtaaataggccacatccttgg
ggtcttcttatcaccttcattgagctgattaaaaacccagcatttaagttctggaaccat
gaatttgtacactgtgccccagagattgaaaagttatttcagtctgttgcacagtgctgc
atgggacagaagcaggctcagcaagtgatggaggggaccggtgccagctag
DBGET
integrated database retrieval system
