Mycolicibacterium parafortuitum: MPNTM1_00250
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Entry
MPNTM1_00250 CDS
T11082
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mpat Mycolicibacterium parafortuitum
Pathway
mpat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mpat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MPNTM1_00250 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpat03021
]
MPNTM1_00250 (rpoB)
03400 DNA repair and recombination proteins [BR:
mpat03400
]
MPNTM1_00250 (rpoB)
Enzymes [BR:
mpat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MPNTM1_00250 (rpoB)
Transcription machinery [BR:
mpat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MPNTM1_00250 (rpoB)
DNA repair and recombination proteins [BR:
mpat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MPNTM1_00250 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
XCI59139
LinkDB
All DBs
Position
complement(261830..265339)
Genome browser
AA seq
1169 aa
AA seq
DB search
MLEGCILAGSRQIESTTNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFEWLIGSEDWF
QRAVDRGDVDPKGGLQEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAA
PLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETI
DKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQITER
FGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARV
GRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHQGDTVMTAPGGVEVPVEVDDID
HFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFF
GTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEG
PNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIEYLTADEEDRHVVAQANSPIDAD
NRFTEAKILVRRKGGEVEFVSASEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANM
QRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVTEKAGVVEEVSADYITVMADDGTRHTYR
MRKFARSNHGTCANQRPIVDAGQRVESGQVLADGPCTENGEMALGKNLLVAIMPWEGHNY
EDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIIR
IGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIR
VFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGT
PVDIILNTHGVPRRMNIGQILETHLGWVAKAGWSIEKGADGAPPAWASKLPEELYAAPSN
STVATPVFDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSGEPFPYPVTVGYMY
ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL
TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD
GDDEDLERAAANLGINLSRNESASVEDLA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggatgcatcttggcagggtcccgccagatcgagtcaaccactaacaactcc
gttcccggagcaccaaatcgaatttccttcgccaagctccgtgagcctcttgaggttccg
gggcttctcgacgttcagaccgagtcgttcgaatggctgatcggttccgaggattggttc
cagcgcgcggtcgaccgcggggacgttgaccccaagggcggtctgcaggaggtcctcgaa
gagctgtcgccgatcgaggacttctccggctcgatgtcgctgtcgttctccgatccgcgc
ttcgacgaggtcaaggcgcccgtcgacgagtgcaaagacaaggacatgacgtacgcggct
ccgctgttcgtcacggccgagttcatcaacaacaacaccggcgagatcaagagccagacg
gtcttcatgggcgacttcccgatgatgaccgaaaagggcaccttcatcatcaacggcacc
gagcgcgtcgtcgtgtcgcagctcgtccgttcgcccggtgtgtacttcgacgagaccatc
gacaagtccaccgagaagacgctgcacagcgtcaaggtgatccccggccgcggtgcatgg
ctggagttcgacgtcgacaagcgcgacaccgtcggcgtccggatcgaccgcaagcgccgt
cagcccgtcaccgtgctgctcaaggcgctcggctggaccaacgagcagatcacggagcgc
ttcggcttctccgagatcatgatgagcacgctggagaaggacaacaccgcaggcaccgac
gaggcgctgctggacatctaccgcaagctgcgcccgggcgagccgccgaccaaggagtcc
gcgcagaccctgctggagaacctgttcttcaaggagaagcgctacgacctggcccgcgtc
ggccgctacaaggtcaacaagaagctcggcctcaacgccggtcagccgatcaccagctcg
acgctgaccgaagaggacgtcgtcgcgaccatcgagtacctggtgcgtctgcaccagggc
gacacggtcatgaccgcccccggtggggtcgaggttcccgtcgaggtcgacgacatcgac
cacttcggcaaccgccgcctgcgtaccgtcggcgagctgatccagaaccagatccgggtc
ggcctgtcccgcatggagcgcgtcgtgcgtgagcgcatgaccacccaggacgtcgaggcg
atcacgccgcagaccctgatcaacatccgtcccgtcgtggcggcgatcaaggagttcttc
ggcaccagccagctgtcgcagttcatggaccagaacaacccgctgtcgggtctgacccac
aagcgccgtctgtcggcgctgggccccggcggtctgtcccgtgagcgcgccggcctcgag
gtccgcgacgtgcactccagccactacggccggatgtgcccgatcgagacccctgagggt
ccgaacatcggcctgatcggctcgctgtcggtgtatgcccgggtcaacccgttcggcttc
atcgagacgccgtatcggaaggtggtcgacggggtcgtcacggatgagatcgagtacctg
accgccgacgaggaggaccgccacgtcgtggcgcaggccaactcgccgatcgacgccgac
aaccggttcaccgaggcgaagatcctggtccgccgtaagggcggcgaggtcgagttcgtc
tcggcctccgaggtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgacg
gcgatgatcccgttcctcgagcacgacgacgccaaccgcgccctgatgggtgcgaacatg
cagcgtcaggcggtcccgctggtccggagcgaggccccgctcgtgggcaccggtatggag
ctgcgtgccgcgatcgacgccggcgacgtggtcgtcaccgagaaggccggtgtggtcgaa
gaggtctctgccgactacatcaccgtgatggccgacgacggcacccggcacacctaccgg
atgcgcaagttcgcccgctccaaccacggcacctgcgccaaccagcgtccgatcgtggac
gccggccagcgtgtcgagtcgggccaggtcctcgccgacggcccgtgcaccgagaacggt
gagatggcgctcggcaagaacctgctcgtggcgatcatgccgtgggaaggccacaactac
gaggacgcgatcatcctctcgaaccgtctggtcgaagaggacgtgctcacctcgatccac
atcgaagagcacgagatcgatgcccgtgacaccaagctgggcgccgaggagatcacccgg
gacatcccgaacgtctccgacgaggtgctcgccgatctcgacgagcgcggcatcatccgc
atcggcgccgaggtccgcgacggcgacatcctggtcggcaaggtcaccccgaagggcgag
accgagctgacccccgaggagcgcctgctgcgcgccatcttcggtgagaaggcccgcgag
gtccgcgacacgtcgctgaaggtgcctcacggtgagtccggcaaggtcatcggcatccgc
gtgttctcccgcgaggacgacgacgagctgcctgccggtgtcaacgagctggtccgcgtc
tacgtggcccagaagcgcaagatctccgacggcgacaagctcgccggacgtcacggcaac
aagggcgtcatcggcaagatcctgcccgtcgaggacatgccgttcctgccggacggcacc
ccggtggacatcatcctgaacacccacggtgtgccgcgtcgtatgaacatcggccagatc
ctggagacccacctcgggtgggtggccaaggcgggctggtccattgaaaaaggtgcagac
ggagcgcctcctgcttgggcgtccaagctgcccgaggagctgtacgcggctccgtcgaac
agcacggtcgcgaccccggtgttcgacggtgcgcaggaaggcgaactcgccggcctgctc
ggctcgaccctgccgaaccgcgacggtgaggtcatggtcaacgccgacggcaaggcgacg
ttgttcgacggccgcagtggtgaaccgttcccgtacccggtgacggtcggctacatgtac
atcctgaagctgcaccacctggtcgacgacaagatccacgcccgctcgaccggtccgtac
tcgatgatcacccagcagccgctcggtggtaaggcgcagttcggtggtcagcgattcggc
gagatggagtgctgggccatgcaggcctacggcgcggcgtacacgctgcaggagctgctc
accatcaagtccgacgacacggtcggccgcgtgaaggtctacgaggccatcgtcaagggc
gagaacatccccgagccgggcatcccggagtcgttcaaggtgcttctcaaggagctgcag
tcgctgtgcctcaacgtcgaggtcctgtcttcggacggtgcggcgatcgagatgcgtgac
ggtgacgacgaggacctggagcgtgccgctgccaacctcggaatcaacctgtcccgcaac
gaatccgcatctgtcgaagacctggcctga
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