Mycolicibacterium parafortuitum: MPNTM1_01984
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Entry
MPNTM1_01984 CDS
T11082
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mpat Mycolicibacterium parafortuitum
Pathway
mpat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPNTM1_01984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpat03019
]
MPNTM1_01984
03400 DNA repair and recombination proteins [BR:
mpat03400
]
MPNTM1_01984
Enzymes [BR:
mpat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MPNTM1_01984
Messenger RNA biogenesis [BR:
mpat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MPNTM1_01984
DNA repair and recombination proteins [BR:
mpat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MPNTM1_01984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
SWI2_SNF2
DUF8096
Motif
Other DBs
NCBI-ProteinID:
XCI60853
LinkDB
All DBs
Position
2084210..2086282
Genome browser
AA seq
690 aa
AA seq
DB search
MATRAQAQTLLEQLAGPHAQLRDDQWTAIEALVVQRRRALVVQRTGWGKSAVYFIAAKLL
RAAGRGPTVIVSPLLALMRNQVDAAARAGVRAATINSSNVTEWDDVHQRVNAGELDVLLV
SPERLNNPDFRDAVLPALAADAGLVVVDEAHCVSDWGHDFRPDYRRIRTLIAELGTDVPV
LATTATANDRVVADVAAQLGVGGTDTLVLRGGLDRESLRLSVVHAGGPAQRAAWLAAHLD
SLPGSGIVYTLTVAQANDIAALLREQGHAVAAYTGGTEAAEREQLEADLLANRVKALIAT
SALGMGFDKPDLGFVVHLGAPSSPIAYYQQVGRAGRSTASAEVILLPGREDADVWRYFAS
VAFPPEALVRRVIDALEPDRAQSTAALEPLVDLNRSRLEMVLKVLDVDGAVRRVKGGWIS
TGQPWEYDEDRYRRLDEARKREQQAMLDYQSTDRCRMSFLRSQLDDPELGPQPCGRCDNC
AGPRYHADVDAGAAEATRQRLMRPGVEIAPRKQWPTGLGKLGIDLSGRITDGPAPGRAIG
RLTDLGWGARLRTLLAEPDAEASDDVLGAAIAVLKAWDWQQRPTGVLALDSATRPKLITS
LTSRLAEVGRLQDLGVLQYSPTHRPTSAANSAYRVAALQNAWSEPAGVTGATVLLVDDLT
DTGWTLTMAARAVRAAGAAEVLPFALAAVS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgagagcccaagcccagaccctcctcgaacagctggcgggcccgcacgcgcag
ctgcgggacgaccagtggaccgccatcgaagcgctggtcgtgcagcggcgcagggcgctg
gtggtgcagcgcaccggatggggaaagtcggcggtctacttcatcgcggcgaagctgctt
cgggccgcgggccgcggccccaccgtcatcgtgtcgccgttgctggcgctgatgcgcaac
caggtcgacgccgccgcccgcgccggtgtccgcgcggcgaccatcaactccagcaacgtc
accgaatgggacgatgtccaccaacgcgtcaatgccggcgagctcgatgtcctgctggtc
agccccgagcgcctgaacaatcccgacttccgcgatgcggtactacccgcactggccgcc
gacgccgggctggtggtcgtcgatgaggcgcactgtgtctcggactggggtcacgacttc
cggcccgactaccgccgcatccgcaccctgatcgccgaactgggcaccgacgtcccggtg
ctggccaccaccgcgaccgccaacgatcgcgtggtcgccgacgtggcggctcagctgggg
gtcggcggcaccgacactttggtgctgcgcggcggactggaccgggagtcgctgcggctg
tcggtggtacacgcgggcgggccggcgcagcgcgcggcgtggcttgccgcccacctggat
tcgctgcccgggtcggggatcgtctacaccctgaccgtcgcgcaggccaacgacatcgcc
gcactgctgcgcgagcagggccacgcggtggccgcatacaccggtggtaccgaggccgcc
gaacgcgaacagctcgaagccgacctcctggccaaccgggtcaaggcgctgatcgcgacc
tcggcgctgggtatgggattcgacaagcccgatctcggcttcgtcgtgcacctcggtgcg
ccgtcgtcgccgatcgcctactaccagcaggtcggccgcgccggacggtccaccgcaagc
gcggaggtgatcctgctgcccggacgtgaggacgccgatgtgtggcgttacttcgcgtcg
gtggccttcccgccggaagccctggtgcgcagggtgatcgacgctcttgagcctgaccgt
gcgcagtccacggcggcactcgaaccgctggtggacctcaaccggtcccgcctggagatg
gtgctcaaggtgctcgacgtcgacggcgcggtgcgtcgggtcaagggcggctggatcagc
accgggcagccgtgggagtacgacgaggaccgctaccgccgcctcgacgaagcgcgcaag
cgcgagcagcaggccatgctcgactaccagagcaccgaccgctgccggatgtcgtttctg
cgcagccaactcgacgaccccgaactcggtccgcagccgtgcggccggtgcgacaactgt
gccggcccgcgctaccacgccgacgtcgacgccggcgcggccgaggccacccggcagcgc
ctgatgcggccgggcgtcgagatcgcgccgcgcaagcagtggccgaccggcttgggcaag
ctgggcatcgacttgtcgggccgtatcaccgacgggcccgcaccgggccgggcgatcggg
cgactgaccgacctcggctggggtgcgcggctgcggacgttgctggccgaaccggacgcc
gaggcctccgacgacgtgctgggcgccgccatcgcggtgctgaaagcctgggactggcag
cagcgcccgactggggtgctggcactggactcggcgacccgccccaagctgatcacctcg
ctgacctcccggctcgccgaggtcggacgcctgcaagaccttggcgtactgcagtattcg
cccacccatcggcccacttccgccgcgaactcggcctaccgggtagccgccctgcagaat
gcgtggagcgaaccggccggggtcaccggggctacggtgctactggtcgacgacctgacc
gacaccgggtggacgctgacgatggccgcccgcgcggtgcgtgcggccggtgcggccgag
gtgctgccgttcgcactggccgccgtcagctga
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