Mycolicibacterium phocaicum: MPHO_48120
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Entry
MPHO_48120 CDS
T07283
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mphu
Mycolicibacterium phocaicum
Pathway
mphu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mphu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MPHO_48120 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mphu03021
]
MPHO_48120 (rpoB)
03400 DNA repair and recombination proteins [BR:
mphu03400
]
MPHO_48120 (rpoB)
Enzymes [BR:
mphu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MPHO_48120 (rpoB)
Transcription machinery [BR:
mphu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MPHO_48120 (rpoB)
DNA repair and recombination proteins [BR:
mphu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MPHO_48120 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Peptidase_M23
Robl_LC7
Motif
Other DBs
NCBI-ProteinID:
BBZ57820
LinkDB
All DBs
Position
4983325..4986828
Genome browser
AA seq
1167 aa
AA seq
DB search
MLEGRILAVSRESKSVDSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSDRW
RSKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDECKEKDQTYA
APLFVTAEFINNTTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDES
IDKATEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIRE
RFGFSEIMMGTLEKDPTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLAR
VGRYKVNKKLGLHDGNPAQVTATTLTEEDIVATIEYLVRLHDGDKTMTAPGGVEVPVEVD
DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK
EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET
PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGIVTDQIDYLTADEEDRHVVAQANSPL
DANGHFTEEKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG
ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTVMADDGSRH
TYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEG
HNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG
IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI
GVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPIEDMPFMP
DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIEGEPEWAANLPEGMHSAPRDSI
VATPVFDGARENELQGLLGATLPNRDGDVMVDADGKATLFDGRSGEPFPYPVTVGYMYIL
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDSD
DEDLERTAANLGINLSRNESASVEDLA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacgcatcttggcagtctctcgcgagagcaagtcagtagattccaacaac
tccgtcccaggagcgccgaaccgagtctcgttcgccaagctgcgcgaaccgcttgaggtt
ccgggcctgctcgacgtgcagacggattccttcgagtggctgatcggctcggaccgctgg
cgctcgaaggcagtcgaccgcggcgacatcaacccggtcggtggcctcgaagaggtcctc
gccgagctgtcgccgatcgaggacttcgccggcaccctgtcgctgagcttctccgacccg
cgcttcgacgaggtcaaggctccggtcgacgagtgcaaggagaaggaccagacgtacgcg
gccccgctgttcgtcacggctgagttcatcaacaacaccaccggcgagatcaagagccag
acggtcttcatgggtgacttcccgatgatgaccgaaaagggcaccttcatcatcaacggc
accgagcgcgtcgtcgtgtcgcagctcgtccgttcgcccggtgtgtacttcgacgagtcc
atcgacaaggccaccgagaagaccctgcacagcgtcaaggtcatcccgggccgtggcgcc
tggctggagttcgacgtcgacaagcgcgacaccgtcggtgtccgcatcgaccgcaagcgc
cgtcagccggtcaccgtgctgctgaaggcgctcggctggaccaacgagcagatccgcgag
cgcttcggcttctccgagatcatgatgggcaccctcgagaaggacccgaccgccggtccc
gacgaggccctgctggacatctaccggaagctgcgcccgggcgagccgccgaccaaggag
tcggcgcagaccctgctggagaacctgttcttcaaggagaagcgttacgacctggcccgc
gtgggccggtacaaggtcaacaagaagctgggcctgcacgacggcaacccggcccaggtg
accgcgacgacgctgaccgaagaggacatcgtcgcgaccatcgagtacctggtgcgcctg
cacgacggtgacaagaccatgaccgcccccggtggcgtcgaggtccccgtcgaggtcgac
gacatcgaccacttcggcaaccgtcgtctgcgcaccgtgggcgagctgatccagaaccag
atccgggtcggcctgtcgcgtatggagcgcgtcgtccgcgagcgcatgaccacgcaggac
gtcgaggcgatcaccccgcagaccctgatcaacatccgtcccgtcgtggcggcgatcaag
gagttcttcggcacgtcgcagctgtcgcagttcatggaccagaacaacccgctgtcgggt
ctgacccacaagcgccgtctgtcggcgctgggccccggtggtctgtcccgtgagcgcgcc
ggcctcgaggtccgcgacgtccactcgtcgcactacggccgcatgtgcccgatcgagacc
cctgaaggcccgaacatcggtctgatcggctcgctgtcggtgtacgcacgggtcaacccg
ttcggcttcatcgagaccccgtaccgcaaggtcgtcgacggcatcgtcaccgatcagatc
gactacctgaccgccgacgaggaggaccgccacgtcgtggcgcaggccaactcgccgctg
gacgcgaacggtcacttcaccgaggagaagatcctcgtccgtcgtaagggcggcgaggtc
gagttcgtctcggcgaacgacgtcgactacatggacgtctcgccgcgccagatggtgtcg
gtcgcgaccgcgatgatcccgttcctcgagcacgacgacgccaaccgcgccctcatgggt
gcgaacatgcagcgtcaggcggttccgctggtgcgcagcgaggccccgctggtcggtacc
ggcatggagctgcgtgccgccatcgacgccggcgacgtcgtcgtggcggacaagtccggt
gtgatcgaagaggtctccgccgactacgtcaccgtcatggctgacgacggctcgcggcac
acctaccggatgcgcaagttcaaccgctcgaaccacggcacgtgcgccaaccagcgcccg
atcgtggactcggggcagcgcgtcgaggccggccaggtcatcgccgacggtccctgcacc
gagaacggtgaaatggccctcggtaagaacctgctcgtggcagtcatgccatgggaaggc
cacaactacgaggacgccatcatcctgagccagcggctcgtggagcaggacgtgctcacc
tcgatccacatcgaggagcacgagatcgatgcccgcgacaccaagctgggcgccgaggag
atcacccgggacatcccgaacgtctccgacgaggtgctcgctgacctcgacgagcgcggc
atcgtccgcatcggcgccgaggtccgcgacggcgacatcctggtcggcaaggtcaccccg
aagggtgagaccgagctgaccccggaagagcgcttgctgcgtgccatcttcggtgagaag
gcccgtgaggtccgcgacacctcgctgaaggtgccgcacggtgagtccggcaaggtcatc
ggcgtccgcgtgttctcgcgcgaggacgacgacgatctgcccgccggcgtcaacgagctg
gtccgcgtctacgtggcccagaagcgcaagatctccgacggtgacaagctcgccggccgc
cacggcaacaagggcgtcatcggcaagatcctgccgatcgaggacatgccgttcatgcct
gatggcaccccggtggacatcatcctgaacacgcacggtgtgccgcgtcgtatgaacatc
ggccagatcctggaaacccacctcgggtgggtcgccaaggccggctggaacatcgagggc
gagcccgagtgggcggcgaacctgcccgagggcatgcacagcgcgccgcgcgacagcatc
gtcgccaccccggtgttcgacggtgcccgcgagaacgagctgcagggcctgctgggcgcg
acgctgcccaaccgcgacggcgacgtcatggtcgacgccgacggcaaggccacgctgttc
gacggccgctcgggcgaaccgttcccgtacccggtcacggtcggctacatgtacatcctg
aagctgcaccacctggtggacgacaagattcacgcgcgttcgactggtccgtactcgatg
atcacccagcagccgctcggtggtaaggcgcagttcggtggccagcggttcggtgagatg
gagtgctgggccatgcaggcctacggtgcggcgtacacgctgcaggagctgctgaccatc
aagtccgacgacaccgtcggtcgggtgaaggtctacgaggcgatcgtcaagggcgagaac
atccccgagccgggtatcccggagtcgttcaaggttctgctcaaggaactccagtcgctg
tgcctcaacgtcgaggtgctgtcttcggacggcgccgcgatcgagatgcgcgacagcgac
gacgaggacctggagcgcaccgccgcgaacctgggtatcaacctgtcgcgcaacgagtcc
gcgtccgtcgaggacctcgcctaa
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