Mycolicibacterium phocaicum: MPHO_48130
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Entry
MPHO_48130 CDS
T07283
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mphu
Mycolicibacterium phocaicum
Pathway
mphu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mphu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MPHO_48130 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mphu03021
]
MPHO_48130 (rpoC)
03400 DNA repair and recombination proteins [BR:
mphu03400
]
MPHO_48130 (rpoC)
Enzymes [BR:
mphu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MPHO_48130 (rpoC)
Transcription machinery [BR:
mphu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MPHO_48130 (rpoC)
DNA repair and recombination proteins [BR:
mphu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MPHO_48130 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBZ57821
LinkDB
All DBs
Position
4986889..4990845
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIVCERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDTEMRHNELSTLEAEMVVEKKAVEDQRDLDLAERAQKLEQD
LAELEKEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL
YRELQDRYGEYFTGAMGAESIKKLIETFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFFLTTQIDGDLGEFV
AATKDSAEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTHLRPPAEIEAQLFENGWKPGDA
WTAETTLGRVLFNELLPKGYPFVDKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPQKQEILERYEGQADAIEKKYQRGGLNHDERNESLVKIWQQA
TEEVGKALEDYYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGVIVTL
AEVQADGSLVRDAHVETSAYARTLATDAVDANGNVVVERGHDLGDPAIEALLAAGISTVK
VRSVLTCATGTGVCAKCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGADIVGGLPRVQELFEARVPRNVAPIADVAGRVQLEEDDKFYKITIVPDDGGEEVVYDK
LPRRNRRLRVFKHDDGTERLLADGDHVEVGQQLMEGSANPHEVLRVQGPREVQIHLVKEV
QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERSEFETENRRVVAEGG
EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLI
PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggcctggccaccgcggaagacatc
cgtaattggtcgtacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
ccggaaaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgtggcgtc
gaggtgactcgcgccaaggtgcgtcgtgagcgtatgggccacatcgagctggccgcgccg
gtcacccacatctggtacttcaagggcgttccgtcgcgcttgggctacctgctggacctg
gccccgaaggatctggaaaagatcatctacttcgcggcctacgtcatcacctcggtcgac
accgagatgcggcacaacgagctgtccacgctcgaggccgagatggtcgtcgagaagaag
gccgtcgaggatcagcgcgatctggacctggccgagcgcgcgcagaagctcgagcaggac
ctggccgagctggagaaggaaggcgccaagtccgacgtccgccgcaaggtgcgcgacggt
ggcgagcgcgagatgcgtcagctccgcgaccgggcccagcgtgagctggaccggctcgac
gagatctggaccaccttcaccaagctggctccgaagcagctcatcgtcgacgaggtgctg
taccgcgagctgcaggaccgctacggcgagtacttcaccggcgccatgggtgccgagtcg
atcaagaagctcatcgagaccttcgacatcgacgccgaggccgagtcgctgcgcgacacc
atcaagaacggcaagggccagaagaagctgcgcgccctcaagcgtctgaaggtcgtcgcc
gcgttccagcagtccggcaactcgcccatgggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggtccagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggttgaagcgactgatcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcgcatgctgcaggagtctgtggacgcg
ctgttcgacaacggccgtcgtggccggcccgtcacgggtccgggcaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctgggtaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgtggtctgccgaagctgatggctctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcacctacgctgcaccgcctgggtatccaggccttcgagccgcagctggtggaaggcaag
gccatccagctgcacccgctggtgtgtgaggcgttcaacgctgacttcgacggtgaccag
atggccgtgcacctcccgctgtcggcggaggcgcaggccgaggcacgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcgtcgggccgcccgctcgccatgccgcgtctggac
atggtgaccggtctgttcttcctgaccacgcagatcgacggtgacctcggcgagttcgtc
gcggccaccaaggacagcgcggagcagggcgtctacagcagcccggccgaggccatcatg
gccatggaccgtggtgcgctgtcggtgcgcgcgaagatcaaggtccgtctgacgcacctg
cgtccgccggccgagatcgaggcgcagctgttcgagaacggctggaagccgggcgacgcg
tggaccgcggagaccaccctgggccgcgtgctgttcaacgagctgctgcccaagggctac
ccgttcgtcgacaagcagatgcacaagaaggtccaggcggcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtcgtggcgcagaccgtcgacaagctgaaggatgccggtttc
cactgggcgacccgctcgggcgtgacggtctcgatggccgacgttctggtgccgccgcag
aagcaggagatcctggagcgctacgagggccaggccgacgcgatcgagaagaagtaccag
cgcggtggtctgaaccacgacgagcgcaacgagtcgctggtcaagatctggcagcaggcc
acggaagaggtcggtaaggcgctggaggactactacccggcggacaacccgatcatcacg
atcgtgaagtcgggcgccacgggtaacctcacgcagacccgcaccctggccggcatgaag
ggtctggtgacgaacccgaagggtgagttcatcccgcggcccatcaagtcgtccttccgc
gagggcctgacggtgttggagtacttcatcaacacccacggtgctcgtaagggtctggcc
gataccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtcgacgtgtcg
caggacgtcatcgtccgcgagaccgactgcgagaccgagcgcggcgtcatcgtcacgctg
gccgaggttcaggccgacggttcgctggtgcgcgacgcccacgtcgagacgtccgcctac
gcgcggaccctggccaccgatgcggtcgacgcgaacggcaacgtcgtcgtcgagcgcggc
cacgatctcggtgacccggcgatcgaggccctgctggccgcgggtatctcgacggtcaag
gtgcgttcggtgctgacctgtgccaccggcaccggcgtctgcgccaagtgctacggccgc
tcgatggccaccggcaagctggtcgacatcggcgaggccgtcggtatcgtcgccgcccag
tcgatcggtgagcccggtacccagctgacgatgcgtaccttccaccagggtggtgttacc
ggtggcgccgacatcgtcggtggtctgccgcgcgtgcaggagctgttcgaggcccgcgtg
ccccgcaacgtcgctccgatcgccgacgtggccggccgggtgcagctggaagaggacgac
aagttctacaagatcaccatcgtccccgacgatggtggcgaggaagtcgtctacgacaag
ctgccgcgtcgtaaccgtcgcctgcgcgtcttcaagcacgacgacggcaccgagcgcctg
ttggccgatggtgaccacgtcgaggtcggccagcagctcatggagggttcggcgaacccc
cacgaggtgctccgcgtccagggcccccgcgaggtgcagattcacctcgtcaaggaggtc
caggaggtctaccgcgcacagggtgtgtcgatccacgacaagcacatcgaggtcatcgtt
cgccagatgctgcgtcgtgtgacgatcatcgactcgggctcgacggagttcctgcccggt
tcgctgaccgagcgcagcgagttcgagaccgagaaccgtcgcgtcgtggccgagggtggc
gagcccgcggccggacgtccggtgctgatgggtatcacgaaggcatcgctggccacggac
tcgtggctgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcgatc
aactgccgtagcgacaagctgcagggtctgaaggagaacgtgatcatcggtaagttgatc
ccggctggtacgggcatcaaccggtaccgcaacatccaggtgcagccgacggaagaggct
cgggccgctgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggt
caggccacgggtgctgccgtgccgctggatgactacggctacagcgactaccgctag
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