Pseudoduganella plicata: E1742_11160
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Entry
E1742_11160 CDS
T06563
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mpli
Pseudoduganella plicata
Pathway
mpli03030
DNA replication
mpli03430
Mismatch repair
mpli03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E1742_11160 (dnaE)
03430 Mismatch repair
E1742_11160 (dnaE)
03440 Homologous recombination
E1742_11160 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpli03032
]
E1742_11160 (dnaE)
03400 DNA repair and recombination proteins [BR:
mpli03400
]
E1742_11160 (dnaE)
Enzymes [BR:
mpli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E1742_11160 (dnaE)
DNA replication proteins [BR:
mpli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E1742_11160 (dnaE)
DNA repair and recombination proteins [BR:
mpli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E1742_11160 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QBQ36660
UniProt:
A0A4P7BEH8
LinkDB
All DBs
Position
complement(2546319..2549873)
Genome browser
AA seq
1184 aa
AA seq
DB search
MSIDTIEQTGAVVLPDEPAPPAGPAFVHLRVHSEYSIVDGLVRIDDLVKAAAKDRQAALA
VTDLSNLFGMVKFYKTARGKGVKPVIGCDVWITNDDNRDKPSRLLLLAKNRVGYLQLCEL
LSTAWLTNQYKGRAELRTEWLAELKDKTYDIFPGETGAHGLIALSGAQFGDIGCAIDNGN
LDLAERHARKWSAIFPGHFYIEIQRAGQPNQEAQVRHSVALAAKLRLPVVATHPVQFMSE
KEFIAHEARICIAEGEMIANAKRVKRFNEQMRFMTQEEMAILFEDLPAALENSVEIAKRC
NVTLTLGKPQLPNFPTPGMTIDEFLVAETKKGLEMRLAHLYPDPVDREKQRPRYEERLEF
ENNTIINMKFPGYFLIVAEFIQWAKDNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLL
FERFLNPERVSMPDFDIDFCQEGRDRVIQHVKELYGKDAVSQIATFGTMAAKGAIRDVGR
VLDFGYNFCDGISKLIPFKPGKPVTIADAIDEEPLLKERLENEEEVRQLLDLAQQVEGIT
RNIGMHAGGVLIAPGKLTDFCPLYTQGGDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTIL
DRAVNYIRELDPAMKDFDLAKVPLTDRPSYDLLTKAKTVAVFQLESRGMQGMLKDARPDR
FEDIIALVALYRPGPMDLIPDFCKRKHGEKFDYPDPRTEGILSETYGIMVYQEQVMQMAQ
IIGGYSLGGADMLRRAMGKKKAEEMAEHREIFRKGAGERGLTTEKADEIFDLMEKFAGYG
FNKSHAAAYALLSYHTAYLKQHHTAAFMAANMSLAMDDTEKVKILVEDSIEVCGLKILPP
DINLSAYRFRPDGPPPSVTGKKVTNIRYGLGGVKGAGQNAIEAIIAAREADGPFVSLFDF
CRRVDKKQINRRTIEALIRSGAFDCFGVDRSVLFASVGFAMECADQEARAANQVSLFGGD
DSDLVAPPEYVQAQPWTDRQKLAEEKIALGFYLSGHMFDSYAVEARRFARTKLSELEPSR
EPRMMCGVITGIRTQMTQRGKILIVSLDDKSAVVEVTVYSEIFEANKKCFKEDEFLAVTG
KVSEDRFTGGLRISAEKVYDIVAARLQFGRQMGWTLPEAVPAAKLRDILAPHRDDYGLPV
QMRIKPQGIECVLQLGDDWRVAPSDALTVALEQVLGAREVAVEY
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgacaccatcgaacagaccggcgcagtcgtgctgccggacgaacccgcgcct
cccgcaggacccgcttttgtccacctgcgcgtgcactcggaatactcgatcgtggatggc
ctcgtgcgcatcgacgacctcgtcaaggccgccgccaaggatcggcaggcggcgctggcc
gtgaccgacctgtccaacctgttcggcatggtcaagttctacaagacggcgcgcggcaag
ggcgtcaagcccgtcatcggctgcgacgtgtggatcaccaatgacgacaatcgcgacaag
ccttcgcgcctgctgctgctggcaaagaaccgcgtcggctacctgcagctgtgcgagctg
ctgtcgacggcgtggctgacgaaccagtacaagggccgcgccgagctgcgcaccgaatgg
ctggcggaactgaaggataagacgtacgatattttccccggcgagaccggggcccatggc
ctgatcgcgctgtccggcgcgcagttcggcgatatcggctgcgccatcgacaacggcaac
ctggacctggccgagcgccatgcgcgcaaatggtcggcgatcttccccggccacttctat
atcgagatccagcgcgcgggccagccgaaccaggaggcgcaggtgcgccactccgtggca
ctggcggccaagctgcgcctgcctgtcgtggcgacgcacccggtgcagttcatgtcggag
aaggagttcatcgcgcacgaggcgcgcatctgtatcgccgaaggcgagatgatcgccaac
gccaagcgggtcaagcgcttcaacgagcagatgcgcttcatgacgcaggaagagatggcg
atcctgttcgaggatctgccggccgcgctggagaactccgtggaaatcgccaagcgctgc
aacgtcacgctcaccctgggcaagccgcagctgccgaacttccccacgccgggcatgacg
atcgacgaattcctcgtggcagaaacgaagaagggcctggagatgcgcctggcgcacctg
tacccggacccggtcgaccgcgagaagcagcgcccgcgctacgaggagcggctcgagttc
gagaacaacaccatcatcaacatgaagttcccgggctacttcctgatcgtggcggagttc
atccagtgggccaaggacaacggcgtgcccgtgggcccgggccgcggttccggtgccggt
tcgctggtcgcctactgcctgctcattaccgacctggacccgctgcgctacaacctgctg
ttcgagcgtttcctgaatccggaacgggtctcgatgcccgacttcgacatcgacttctgc
caggaagggcgcgaccgcgtcatccagcacgtcaaggaactgtacggcaaggacgccgtg
tcgcagatcgccacgttcggtacgatggcggccaagggcgcgatccgcgacgttggccgc
gtgctggacttcggctacaacttctgcgacggcatctcgaagctgatcccgttcaagccg
ggcaagccggtaacgatcgcggacgcgatcgacgaggagccgctgctgaaagagcgcctc
gaaaacgaagaggaggtgcgccagctgctcgacctggcgcagcaggtggagggcatcacc
cgcaacatcggcatgcacgccggcggcgtgctgatcgcgccaggcaagctgaccgacttc
tgcccgctgtacacgcagggcggcgatggcggcgtggtgtcgcagtacgacaaggatgac
gtggaggccgtgggcctggtgaagttcgacttcctgggcctgaccacgctgacgatcctg
gaccgcgcggtgaactacatccgcgaactcgatccggcgatgaaggacttcgacctcgcc
aaggtgccgctgacggaccggccgtcgtacgacctgctgacgaaggcgaaaacggtggcc
gtgttccagctggagtcgcgcggcatgcagggcatgctcaaggacgcgcgccccgaccgc
ttcgaggacatcatcgcgctggtcgcgctgtaccgtcccggcccgatggacctgattccc
gacttctgcaagcgcaagcacggcgagaagttcgattatccggatccgcgcacggaaggc
atcctgtccgagacctacggcatcatggtctaccaggaacaggtcatgcagatggcgcag
atcatcggcggctactcgctgggcggcgcggacatgctgcgccgcgcgatgggcaagaag
aaggccgaggagatggccgagcaccgcgagatcttccgcaagggcgcgggcgagcgcggg
ctgacgacggaaaaggccgacgagatcttcgacctgatggagaagttcgcgggctacggt
ttcaacaaatcgcacgccgccgcgtacgcgctgctgtcgtatcacacggcctacctgaag
cagcaccatacggccgcgttcatggcagccaacatgtcgctggcgatggacgacacggaa
aaggtcaagatcctcgtcgaggactcgatcgaggtctgcggcctgaagatcctgccgccg
gacatcaacctgtcggcctaccgcttccgtccggacggcccgcccccctccgtcacgggc
aagaaggtcacgaatatccgctatggcctgggcggcgtcaagggcgccggccagaacgcg
atcgaggcgatcatcgccgcgcgcgaggccgacggtccgttcgtcagcctgttcgacttc
tgccgccgcgtggacaagaaacagatcaatcgccgaacgatcgaggcgctgatccgctcg
ggcgcgttcgactgcttcggcgtcgatcgctccgtgctgttcgcctccgtcggcttcgcg
atggaatgcgccgaccaggaagcgcgcgcggcgaatcaggtcagcctgtttggcggcgac
gacagcgacctggtggcgccgcccgagtacgtgcaggcgcagccctggacggaccgccag
aagctggccgaggaaaagatcgcgctcggcttctacctgtccggccacatgttcgacagc
tatgcggtcgaagcgcgccgcttcgcccgcaccaagctgtccgagctggagccgtcgcgc
gagccgcgcatgatgtgcggcgtcatcacgggcatccgcacgcagatgacgcagcgtggc
aagatcctgatcgtctcgctggacgacaagagcgccgtggtggaagtgacggtgtacagc
gaaatcttcgaagccaataaaaaatgcttcaaggaggacgagttcctggccgtgacgggc
aaggtgtcggaagaccgcttcacgggcggcctgcgcatctcggccgagaaggtctacgat
atcgtcgcggcgcgcctgcagttcgggcgccagatgggatggacgctgccggaagccgtc
cctgccgccaagctgcgcgacatactggcgccgcaccgcgacgactacggcctgccggtg
cagatgcgcatcaagccgcagggcatcgagtgcgtgctgcagctgggcgacgactggcgg
gtggcgccatccgatgcgctgacggtggcgctggagcaggtgctgggcgcgcgcgaggtg
gcggtggagtactga
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