Macrobrachium rosenbergii (giant freshwater prawn): 136837042
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Entry
136837042 CDS
T10429
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136837042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrj03019
]
136837042
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
136837042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_17
TPR_19
TPR_8
TPR_CcmH_CycH
TPR_16
TPR_12
TPR_11
TPR_6
TPR_9
TPR_10
FAT
ARM_TT21_C
ARM_TT21
MIT
ATP_sub_h
LXG
Motif
Other DBs
NCBI-GeneID:
136837042
NCBI-ProteinID:
XP_066957719
LinkDB
All DBs
Position
57:complement(7248946..7292445)
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AA seq
1344 aa
AA seq
DB search
MAEVKAALKEAKKAMKDNDFESVMKHCKVVLKHDRKNYNGLVIFGRACQELGKPDDSKKA
LMLATQVDPESPVAWQGLKKLCDEHPDIATKDELFTILSRLKDIIQDDEEKLDGIYRKLA
TIQLDNNEAVAASVTLRELVTKLKAQRKVNEAWKSIVQILSGIKDLSPEDIPKLQEALEN
VLNESVLGDNEGNYQSYLHLLYRTRQMMKLVSAAKAMLAIFPTYFPLEWLCRTFVEMTAN
PTEGDGEYPLDREEVEKYVSKLLTLNKASPWGNLAQGLLYQQDKQLPEARAHFRVGAERV
TNNLLGWKLLLGANEASNNWPGVEVACKKSLDVMASNAKVAIPGNEEFESYRWRMKLTRA
KAFVYMGHDNHLREAVSILEEQADEDLESGLLLVRSLIKLMEFALAEKKLNSLMSVHKGQ
PQLMLLSAILLKEQGDTPGAQQVLEQFVQENPSVGEGHLELGCIYYETGNLAKAHICCMR
AGKLDPSLGRAFLYLGHFFRYQDNMEKALKCYEKAMNVNPCDDDTGAALSDMYRIMGKHE
ENIALLRKITNEVGRSSCAWAWLRLGLHHYVLHELTESILAFQYALTINPNDGAGYECLG
DALLARGAHSAALKVFQHAATLRPDAVYPLCQIAHIKQILGENLEAIADYEAVLTKNPMP
AVEVVSLLGLAETLLASARKYYEQYFHINVKQSCLRAIALLMRAASIKPSCSSAWKLIGD
ACTLLYPMPPSLSQFSIPSKLMQREEDDLNAAVTVDKLQILQLGARCYGLSLQITKDDSN
LWHDLGINTYLQGIVLEETSKEGNEDVIKDLFLRSIKSLKKSVELEPTSAKAYNSLGVVA
AHKVVGEYALAQHAFLKSIDLQPTAISWTHLGALYLTHKDVHLAHEAFSQAQASDPSFVT
CWVGQALVAESIDHSDFYDLFRHTTVLGIQVESCLGYGHHVTRIACDDNTLKNLRMTQVI
EHSLPGATDSLVYYTREKETDIIALNMAGLTLEMMKLYQSAVKSYQMALNVIGQGEEPEI
VKLRDGVYCNLGRALTGLGEVEEAMKYYAAIKEPDYFAHCGLALASLKAGKFEEAYNGYT
SALHWLAPDDTQKSHILVALASLQYKFQNPDEAKKLLFQGSQLRGASVHGLLALAALGLI
SMDAVLTNAALAELTPYEHDPKYLDHIAFLRAAEATSNGNLRGAKLILSRIIHQHPSSAP
LWRSLAQHLLTVPKARGQVYVSKAATNCASAARKLSQVAGDTKIIAQDAVTSVIAALGTS
LTKASDNDKRKTSLRQAQRAVLMCPGSPEAWAVLIAAKMASNQNQIKDDVGQLAEIWSTK
ASSRVSTWLHAVAAGKNLDKNVPI
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagttaaagctgctctcaaggaagccaagaaggctatgaaagacaatgacttt
gagtcagtaatgaagcattgtaaggttgttctgaagcatgatcgaaagaattataatgga
cttgtcatatttggacgagcttgccaggaacttgggaaaccagatgactcaaagaaagct
ttgatgttagcaacacaagttgatccagaaagtccggtggcctggcagggactcaagaag
ctttgtgatgaacatccagatattgcaacgaaagatgagcttttcacaatattatcgcga
ctcaaagatattattcaagatgatgaagagaaacttgatggtatttatcgcaaattagca
acaatacagctggacaacaatgaagctgtcgcagcttcagttaccttaagagaacttgtg
actaaactgaaagctcagaggaaagttaatgaagcatggaagagcatagtgcagattctt
tcagggatcaaagatttgtctccagaggacatccccaagttgcaagaggcattggaaaat
gtacttaatgaatctgtgttgggagataatgagggtaattaccaaagctatttgcacttg
ctctatcgcacccgacaaatgatgaagttggtgtctgccgcgaaggcaatgttggccata
tttcctacttatttcccgttggagtggttgtgccgaacctttgtggaaatgactgccaac
ccaacagaaggagatggagagtaccctctggatcgtgaagaagttgagaagtatgtttca
aaactccttacccttaacaaagcatctccttggggtaatctagcccaaggtctcctgtat
cagcaagataaacagttaccagaagctcgagcacatttcagagttggtgcagaacgtgtt
acaaacaatcttctagggtggaagttgctgttaggagcaaatgaagcctcaaataattgg
ccaggtgtagaggttgcatgtaagaagtcacttgacgtcatggcctctaatgccaaggtt
gccattcctggcaatgaagagttcgagtcttatagatggaggatgaaattaactcgtgcc
aaggcattcgtttatatgggtcatgacaaccatttaagagaggctgtctcgattcttgag
gagcaagctgatgaagacctggaaagtgggcttctgctggttaggtcactgatcaaattg
atggaattcgccttggctgagaagaaattgaattccctaatgtcagtgcataagggtcag
ccgcagttgatgctcttatcagctattcttctgaaggaacagggagacactccaggagca
cagcaagttttggagcagtttgtacaggagaacccatcagttggtgaaggacatctggag
cttggttgcatctactatgaaacaggaaatttggcaaaggctcacatttgttgcatgaga
gctggcaagttggatccaagtcttggacgggctttcttgtatctgggacacttcttccgc
taccaggataacatggagaaggccctcaagtgctatgaaaaggctatgaatgtaaatccc
tgcgatgatgacactggtgctgccctgtctgacatgtataggataatgggaaaacacgaa
gaaaacattgctctgttacgcaaaataacaaatgaagtgggcagatcgtcgtgtgcatgg
gcttggttacgccttggccttcatcattacgtcttgcatgaactgacagagtccatatta
gcatttcagtatgctctcactattaacccaaatgacggggcaggatatgaatgccttgga
gatgcccttcttgccagaggtgctcactcagctgccctaaaagtgttccagcatgcagcc
actcttcgaccagatgccgtataccccctctgtcaaatagctcacattaaacagatttta
ggtgaaaaccttgaagcaattgcagattatgaagctgtgctgactaaaaaccctatgcca
gcagtagaagtggtctcattgcttggcttagctgagactctattagcaagtgcccgcaag
tattatgaacagtacttccatatcaacgtcaaacagtcatgcttaagggccattgcactg
ctgatgagggctgcaagcattaaacccagctgttcatctgcatggaagttaattggagat
gcttgtacactgctctaccctatgccaccatcactttcacagttttccatcccctcaaaa
ctcatgcagcgggaagaagacgatcttaatgcagcagtcactgttgataagcttcagatt
cttcagttaggagcaaggtgttatggcctctccttgcaaataaccaaagatgactctaat
ttgtggcatgacctgggtataaacacttatttgcaaggtattgtcttggaggagaccagc
aaagaagggaatgaagatgtcatcaaagacctctttttgcgttcaatcaagtctctgaag
aaatcagttgaactggagccaaccagtgccaaggcttacaattctctgggtgttgttgct
gcccataaagttgttggagagtatgcactagcacaacatgcatttttgaagtctattgac
ctgcagccaacagccatttcctggactcacttaggagcattgtacttaacccataaagat
gttcatttggcgcatgaagcgttttcacaggcacaagcaagtgatccttcatttgtcacc
tgctgggtgggtcaggcccttgtagcagagagcattgaccactccgacttctatgatctt
ttccgtcatacaactgtacttggcatccaggttgagagctgtttgggctatggtcatcat
gttacccggatagcatgtgatgataacaccctaaaaaatctgagaatgactcaagttatc
gagcactctcttccaggtgccactgactctctagtttattataccagagaaaaagagaca
gacataattgcccttaacatggcgggcttgactctggagatgatgaagctttaccagtca
gctgttaaatcttaccagatggcattaaatgtcattggccaaggggaggagcctgaaatt
gtcaagcttcgtgatggagtgtactgtaatttaggaagggcacttactggactgggtgag
gtggaggaggcaatgaaatattatgcagcaatcaaggaaccagactattttgcacactgt
ggccttgcacttgcaagtttgaaagctggtaaatttgaagaagcctacaatggttacacc
tctgccctccactggcttgcccctgatgacactcaaaagtcacatatactggtagcactg
gcatctttgcagtacaagttccagaacccagatgaagcaaagaagctcctgttccaagga
tctcagttacgtggagcatcagttcatgggcttctggcgctggcagcactaggtcttatc
tctatggatgctgtgctcacaaatgcagccttggcagaactcaccccatatgaacatgac
ccaaaatacttagatcatattgcatttttgagggctgctgaagcaacctctaatggtaac
ctgagaggtgcgaagctcattctcagtagaattattcaccagcatccatcaagcgctccg
ttgtggagatctcttgctcagcacctcctcacagtgccaaaggctcgtggacaagtatat
gttagtaaggctgctacaaattgtgcatctgcagcaaggaagttatctcaagtggctggg
gatacaaagatcattgcacaagatgctgtaacaagtgttattgcagccctgggaactagt
ttaaccaaggcatctgataatgacaagaggaaaaccagcttacgtcaggcacagagagct
gttcttatgtgccctggttcccctgaagcttgggctgttcttattgcagcaaagatggca
tccaatcaaaatcagataaaagatgatgttggccagcttgctgaaatttggtcgaccaaa
gcatcgtcacgtgtatctacatggctgcatgcagttgcagctggtaaaaatctggataaa
aatgttcctatataa
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integrated database retrieval system
