Macrobrachium rosenbergii (giant freshwater prawn): 136845077
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Entry
136845077 CDS
T10429
Symbol
Not1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136845077 (Not1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrj03019
]
136845077 (Not1)
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136845077 (Not1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
136845077 (Not1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
CNOT1_HEAT
DUF3819
CNOT1_1st
DUF7813
TERB2
SpoIIP
DDHD
Motif
Other DBs
NCBI-GeneID:
136845077
NCBI-ProteinID:
XP_066971004
LinkDB
All DBs
Position
13:27708250..27760476
Genome browser
AA seq
2553 aa
AA seq
DB search
MNLDSLTAALSHIGNLVASLTKKNLNSSAQEIQEVVRQFGGEAERHLYRVLIGNLEWSGP
QSGETHRPSPNNNNNNNKDKETPSSVSVATLGWCSASGGASALLLQHLSATLPHTIFIAN
LAFAIANPPSPSKYIKAQWVSSVCKVLRLSRVQEITLSLTLLQATSVEVRNQAIALLKAK
LPDLVRAYVDTESGDRELLELPTEALHQLLAQIVQLWRDPPAALLPQESRQAFICALQRE
FPRSRVPVVLAPLLYPDSDVLMEKITQEPPANMAKNLLDGSLADLVLELGYSFCNTVEEC
RSNLMNFGVSSITPAAVAKVLGVMVRTHTGLPSEQIGLQNLNSPSSLWSDNKDKSSSNQS
QPVSGNDSNLSGSGNIAGPHGWNVEVFVKALLEVVPSLNLKEVFAKLDHKGFLVKDRQGL
KLLITALRSLLQGQGMRQEVFPVDCFYMQWKNSEEQLSLFTEILKSPDIFCFTEYPCVQV
ATDCLKSLPDLENREIATWRSMQLLETLLYLGEAGHYAVVKELFKFPIQHCPDILVLGLV
QATFPYTMLRQDLIASLIPIFLGNHPNAAIILHNAWHTQNNTTTVRQIVMHAMAEWYMMV
ENDQTRLGRILDVAQDLKALSLLLNAQPFPFVVDLACLAYRREFLKLDKWLTDKIREHGE
AFISACVKFLQKRCPQLMGGKDDIMPKSSQLPPETMATILVCLNACVLNVSDELADTIMT
MVQHCSLLSQSQRPRTQQQIGFPGGASAQAGEGTLGGIASNLGNLSIGATGGASSTMFPA
PSSTAVPLSGSLGTAPGSPGRPLGPLSAPGTSQSPLSSIVSAIGLPALQMPPTLPPPVGS
QLPALPTSSIIPSTLRSQSVQPTNAPVRQMDITQIFDMPALVTKEVEDEANSYFQRIYNH
PPHPTLSIEEVLEMLKKFHDSSNKREREVYSCMLRNLFEEYKFFPTYPDKELFTTARLFG
GIIEQGLVEYMALGVALRFVMEALHKPHGSKMYYFGIVALDKYRSRLKEYPRYCQHLMAI
PHFNEFPPHLIEYIKYGTQSQEPPSRPSGVVLPPSMNVSPSTPAPSSTTASASAAVSTVG
VPPSSAVTSVVTSVVKTMTATTTTTTTSAVTRPQSITGASAAVGSGKPTMTTTNIETLLV
ATEKEEKVTPPPEHIQDKIAFIFNNLSQVNLPQKCEELREVVSEEYWIWVAQYLVLKRAS
IENNFHTLYSLFLDQLKMTNFNAMVCRETLRNIKVLLRSDKSAANFSDKSLLKNLGHWLG
MLTLAKNKPILHTDIDMKSLLVESYNKGLQEMQYVIPFVAKVMESCAKSRVFKSPNPWTM
AIMNVLAELHKEPDMKLHLKFEIEVLCNKLEINLEGLKPGNVLNDRDRIARIKPQLSHPV
GPKRAESTPLFTALQGFSSSTFMPKTSWAPVAPSGPVINTNATSAQSSSVGATPTPPAVL
PPHPSTTPTPIQSHQQTASEPRFAYSDINILSLRSLDAHISIPVLPTNNILITTNTQIKH
FIRQAIEIAVQEIVGAVIERSIKIAMTTSEQIIKKDFALDPDESRMRAATHHMVRNLTAA
MAMITSRDYVANTMRKGLKQGLWSVYARQVSQLQSCSHSRDAADQIEEMAALIIQENIGL
ACAFIQKTAAEKAVMEMDKRLSQDYEARKLARTEGRRYCDPVVLTYQAERMPEQIRLQVG
GVTPPQMAVYEEFARNIPGFLPISEQDAMFLPKPVPITTVSEQQQQQQQQQQQQQQQQQQ
QQQQQQTQQQQQQQQPHLSFGNDEATAFLLLTDRMSAELDHTIQAFTTLAPTSPLIPMLH
SLRDGLIFTRSNRDVHSVQLLLRKAVENLLEGSRELPTEPELSQLALRFRDCHLIVLKAM
ADPQSYGLGWTSRNVTKCWAESRDEGKFNLDVIDWLIRSHLLNMQLFDEQLARILEDPRL
PTLMPMHSRFIMQLVQMYLVDDPSNTVLSESDLQLTLEGLVRLCHSRQPPEGLFMLIEAL
KLKHDLMSGERLSSTHLGASSVTGISSLPSLHFHSGVTQARDFQDPPALQEKTEVLLREW
IQMYHSPTAGQGSASAFQHYVKQMNLHGILKTDDLITRFFRICISMCRDLCVRSILEHGQ
GPASPTYMRSKCFQNLDAFVRLIALLVKHSGEATNPTTKINLLNKVLGLVSGIMIHDIET
NGTEFQQLPYHRILIMLFLELNAPEAILESINLPVLMAFTQTLHLLRPSKCPGFAYAWIE
IVSHRVFIGRMLAITPQQKGWSMYSMLLIDLFKFLAPFLRNAELAKPLTMLYKGTLRVLL
VLLHDFPEFLCEYHYGFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLPEITI
SPKIVTNVANLIQPPEFKKNLDSYLKNRTPVTFLSDMRTYLQQVSSEPGMRYNMSVMNSL
VLYVGMQAIAQIHSKGLTPSMSTIAHSAHMDIFQNLGVDLDTEGRYLFLNAIANQLRYPN
SHTHYFSCTLLHLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPSFRFW
SHEFVKCAPEIEKLFESVARSCMVQKATRDPDA
NT seq
7662 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagactcgctaactgctgctttgtctcatattggtaatctggtcgccagtttg
acaaagaaaaacctgaactctagtgcgcaagagattcaggaagtggtgcgtcagtttggt
ggagaggcagagcgacacttgtacagagtgcttattggaaacctggagtggtctgggccg
caaagtggagaaactcatcgcccttcccccaacaataacaataataataataaggataag
gaaactccctccagtgtaagtgtagccacccttgggtggtgttctgcaagtggtggggcc
agtgcactgctcctacaacacttatctgccacccttcctcacacaatttttattgctaat
cttgcctttgctattgccaacccaccaagccccagtaagtacatcaaagcacagtgggtt
agtagcgtgtgcaaagttctccgattgtcacgtgtacaggaaattacattaagtttaacc
ttactccaagcaacaagtgtagaagttcgtaatcaagcgatagctcttcttaaagccaaa
ctaccagatcttgttcgtgcatacgttgatacagaatcaggggaccgagagctcttggaa
cttccaactgaagctcttcatcagctgctagcacagatcgtccagttgtggagagatcct
cctgctgctctcttgccgcaggaatccaggcaggcgttcatctgtgctctacagcgagaa
ttccctcgttctcgcgttcctgttgttcttgctcccctcctctaccctgattcagacgtc
ctgatggagaagattacacaagagccaccagccaatatggctaagaacctgcttgatggt
tcgttagctgatcttgttttggaactcggttatagtttttgcaacactgtagaggaatgt
aggagtaacctgatgaactttggagttagttccataactccagcagctgttgccaaagtt
ttaggtgtaatggtcaggactcacacaggcctcccatcagaacagattggactgcagaac
ttgaattctccaagctccctgtggagtgacaacaaagataaatcatccagcaatcagtcc
caaccagtcagtgggaatgattccaatttgagtggttcgggcaacattgctggacctcat
ggatggaatgttgaagtgtttgtaaaagcacttcttgaagtggtaccaagtttgaacctc
aaggaagtctttgccaagctagatcacaaaggtttcttggtgaaagacagacaaggttta
aaacttcttatcactgctctcaggtcattacttcaaggacaaggtatgcggcaagaagtt
ttcccagtggattgcttttacatgcagtggaagaatagcgaggaacaactcagtcttttt
acggagattctcaaaagcccagatatattttgcttcacagaatatccgtgtgtacaagtg
gctacagattgccttaaaagtttacctgatttagaaaatagagagattgcaacatggagg
tcaatgcagctattggaaacactcttgtacctaggagaagcaggccactatgcagtagtg
aaagaacttttcaaatttccaattcagcattgtccagatattttggtgttaggtttagtt
caggcaacatttccatacacgatgttgcgccaagacttaattgcctcgcttatccccatc
ttcttggggaatcatccaaatgcagctatcattttacacaatgcttggcatactcagaac
aataccactactgtacgccaaatagtaatgcatgcgatggcagagtggtacatgatggtg
gagaatgatcagacaagattaggcagaattttggatgttgctcaagacttgaaggcactc
tcactgttactcaatgcccagccttttccattcgttgttgatttagcctgtcttgcttat
agacgtgaatttctcaaattggataagtggttgacggacaaaattcgggagcatggcgag
gcctttatttctgcttgtgtaaaatttctccagaaacgctgtccacagctaatgggtggc
aaagatgacataatgccaaagtcctcacagcttcctccagagacaatggctacaatactt
gtctgcctgaatgcctgtgtcttgaatgtgtctgatgagttggcagatacaataatgacc
atggttcagcattgcagtctgttatctcagtctcagcgtccaagaacacaacaacagatt
ggatttcctggtggggcatcagcccaggctggtgaaggtactcttgggggtatcgcttcc
aatttgggtaacctaagcattggcgctactggtggagcctcttcgaccatgtttccagct
ccttcctcaactgcagtgcctttgagtggatcactggggacagcaccgggatcccctgga
cgtccactaggacctttatcagcacctgggacatcacagtcacctttgtcatccattgtg
tcagccattggattacctgccttgcagatgcctcctaccctacctccgccagtaggatcg
caacttccagcactccctacgtcatcaataatcccgtcaacactcaggtcgcagtctgtg
cagcctactaatgcacctgtgaggcaaatggacatcactcaaatctttgatatgcccgcc
ctcgttaccaaagaagttgaagatgaagcgaacagttacttccagcgtatttacaaccat
cctcctcatcccaccttatccattgaagaggtattggaaatgctgaaaaagtttcatgat
tcctctaataagagagagcgagaagtatactcttgtatgcttcgaaacttatttgaagag
tacaagttttttcctacatacccagacaaagaactttttactacagcacgactttttggg
ggcattattgagcaaggcttagtagagtacatggccttaggtgttgcccttcgctttgta
atggaagccctccataaaccacatggatcaaaaatgtattattttggtatagttgctcta
gataagtatcgaagccgtcttaaagagtatccacgatactgtcagcatttgatggcaata
ccacacttcaatgaattcccaccgcatcttatagagtatatcaaatatggcactcagtca
caagagccgccttctcgtccttcgggtgttgtattacctccatccatgaatgtctctccc
agtactccagcaccgtcttcaaccactgcaagtgcttcagcagctgtgagcactgttggt
gttcctccttcatcagctgttacctcagtagtgacatctgttgttaaaacaatgactgca
actacaacaactaccaccacctctgctgttacccgccctcagtcaattacaggcgcttcg
gcggcagttggttcaggaaagcctactatgacgacaacaaatatcgaaactcttctggtt
gcaacggaaaaagaagaaaaagtcacgccacccccagaacacattcaagataagattgcc
ttcatttttaataatctttcacaagtgaatctccctcagaagtgtgaagaactcagggag
gttgtaagtgaagaatactggatatgggtggctcagtacctagttttgaaaagagcatct
atcgagaataatttccatacattgtattcattatttcttgatcaactcaagatgacaaac
ttcaatgctatggtgtgcagggagacattgaggaatattaaggttcttctaaggtctgat
aaatctgctgcaaatttctccgataaatctttattgaagaacttaggccattggttgggg
atgctcactttggctaaaaataaacccatcttgcatacagacattgacatgaagtctttg
cttgtagaatcgtacaataaaggtttacaggagatgcagtatgtcattccgtttgtggct
aaggtgatggagtcttgtgctaagagcagggttttcaagtcacctaacccatggacaatg
gctatcatgaatgtactggccgagttgcataaggaacctgatatgaaacttcatctaaag
tttgagatcgaggtgctttgtaacaagctagaaattaacttagaagggctaaaacctgga
aatgtattgaatgacagggatcgtattgctcgtatcaaacctcagttgtcccaccctgtt
ggaccaaagagagctgaatctactcctctgttcacagctctgcaaggtttctcaagtagt
acctttatgccaaagaccagttgggccccagttgctccatcgggaccagtgataaacaca
aatgccacatctgcccagagttcctctgttggtgccactcccaccccaccagcagtcctt
cctcctcatccctccacaaccccaacacccatccagtctcatcaacaaactgcctcagag
ccacggtttgcatactcggacataaatatactctctctcaggagtttggatgctcacata
tctattccagtccttcctactaataatatactgatcaccaccaacacacagataaaacac
tttatccgacaagccatagagatagcggtgcaagagatagttggagctgtgatagaaaga
agcattaagattgcaatgactacaagtgagcaaattattaagaaagattttgctttagat
ccagatgagtcacgaatgcgtgctgcaacgcaccacatggtacgcaacctaacggctgcg
atggctatgattacatcccgggattatgtagctaacacaatgaggaaaggactgaagcaa
ggtctatggagtgtttatgcaagacaagtctcccagctgcagtcttgtagtcacagtcgt
gatgcagcagaccaaattgaagaaatggctgccttgataattcaggagaatattggtctt
gcttgtgcctttatccagaaaactgcagcagaaaaagcagtaatggagatggacaaaagg
ctgtcacaggattacgaagctcggaaattagcccgaacagaaggccgaaggtactgtgat
ccagttgttcttacataccaagcagaacgtatgcctgaacaaatccgtcttcaagtaggt
ggggtgacaccaccccaaatggctgtgtatgaagagtttgcacggaatataccaggcttt
cttcccatcagtgaacaggatgccatgttcttaccaaagccagtgcctatcactacagta
agtgaacaacagcagcagcaacagcaacaacagcagcagcaacagcagcagcagcagcag
cagcagcaacagcagcagacacagcagcagcagcagcaacagcaacctcacttatcattc
ggtaacgatgaagcaactgccttcttactcctgacggaccgcatgagtgctgaattagac
catacaattcaggccttcacaaccctcgcaccaacatcaccgctgattcctatgttacac
tctctgcgtgatggattgatcttcactcgatcgaatcgtgacgttcactctgttcagttg
ttgctaagaaaggctgtcgagaaccttttggaaggttcgcgtgagctacctaccgaaccg
gagttaagtcagttggccttacgatttagggattgccatctcattgtcttgaaggccatg
gctgatccacagtcatatggccttggctggacatcgaggaatgttacgaagtgttgggct
gagtcaagagatgagggcaagtttaatttggatgtcattgactggttaatccgctctcat
ttgttaaatatgcagctgtttgatgaacaattggcacgtattttagaggatcctcgcctg
cctactttgatgccaatgcattctcgctttattatgcagctagtccagatgtatttggtt
gatgatcccagtaacacagtactgagtgaatctgatctgcagctcactttggaagggtta
gttcgtctttgtcacagtcgccaacccccagagggcctctttatgttgattgaagcactt
aaactgaaacacgatctcatgagtggtgaaaggttgagcagtactcacttgggagcaagc
agcgtcactggaatatcaagtcttccaagtcttcacttccattctggagtaacacaggcc
cgggattttcaagacccacctgctttgcaggaaaagactgaagtcctgttgcgggaatgg
atccagatgtatcactctccaacagccgggcaaggctcagcatcagccttccagcattat
gtgaaacagatgaatctacatggtattttgaagactgacgatctcattacaaggttcttc
cgcatctgcatttcaatgtgccgagatttgtgcgtgcgttccattctggagcatggacaa
ggtcctgcatcacccacttacatgcgaagcaaatgtttccagaatttggatgcctttgtg
cgcctcattgccttgttagtcaaacattctggggaggccacaaacccaacaaccaagatt
aatctgcttaataaggtacttggtctagtctctggtatcatgatccacgacatagaaact
aatggaactgaattccagcaacttccatatcaccgtatcctgataatgctgttcctagaa
ttgaatgctccggaagccatattagagtctatcaatttaccagttctcatggcattcacc
caaaccttacacctactgcgtcccagcaagtgcccaggatttgcatatgcatggatagaa
atagtgagtcaccgtgtcttcataggacgtatgctggccatcactccccagcaaaaggga
tggtctatgtattcaatgttgttgattgatctcttcaagttcttagcgccattcctcagg
aatgcagagcttgcaaaaccacttactatgctttacaaaggaaccttgcgggtattgttg
gttctcttacacgacttcccagaatttctctgtgaataccattacgggttctgtgacgtc
atccctccaaactgcattcagatgcgcaacttgattttgagcgcatttccccgtaacatg
agacttcctgatccatttactccaaatctaaaagttgatatgttgcctgaaatcacaatt
tctcccaagattgtaacaaatgttgccaatttaattcaaccaccggaatttaagaagaac
ctggattcttacctgaagaataggacaccagttacgttcctttcagatatgcgtacttac
ttacagcaagtttccagtgaacccgggatgaggtacaacatgtctgtgatgaattctttg
gtgctgtatgttggcatgcaggctattgcacagattcatagtaaggggttaactccttcc
atgtccacgattgctcactccgcccacatggacatctttcagaacctcggtgttgattta
gacacagaaggtcgttacttgttcctgaatgccatagccaaccagttgcgctatccaaat
agccatacgcattacttcagctgcactctcttacatctctttgctgaagcaaatgcagaa
gcaattcaggaacagataaccagggttcttctggagaggttgattgtcaatcgaccacac
ccttggggtttactcatcacattcatcgagctgattaagaatccttcttttaggttctgg
agtcatgagtttgtcaaatgtgcccctgaaattgaaaagttgtttgagtctgtggcacgt
tcgtgtatggttcagaaggctacacgagacccagatgcatga
DBGET
integrated database retrieval system
