KEGG   Marinobacterium rhizophilum: KDW95_21395
Entry
KDW95_21395       CDS       T08609                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
mrz  Marinobacterium rhizophilum
Pathway
mrz02024  Quorum sensing
mrz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mrz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KDW95_21395 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    KDW95_21395 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mrz03019]
    KDW95_21395 (hfq)
   03036 Chromosome and associated proteins [BR:mrz03036]
    KDW95_21395 (hfq)
Messenger RNA biogenesis [BR:mrz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     KDW95_21395 (hfq)
Chromosome and associated proteins [BR:mrz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    KDW95_21395 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UTW11775
UniProt: A0ABY5HHE5
LinkDB
Position
4751247..4751486
AA seq 79 aa
MSKGQSLQDPYLNVLRKERVPVSIFLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPARPVKLPQADEKQPD
NT seq 240 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcagtctttacaagacccttatctaaacgttctgcgcaaggagcgtgtg
ccggtttcgattttcctggtgaatggtatcaagctgcagggacagatcgagtctttcgat
cagttcgtgattctgcttaagaataccgtcagccagatggtctacaagcatgcgatatct
acagtcgttcctgcccgtccggtgaaactgccgcaggccgacgagaagcagccggactga

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