Mycobacteroides salmoniphilum: DSM43276_03662
Help
Entry
DSM43276_03662 CDS
T06041
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
msal
Mycobacteroides salmoniphilum
Pathway
msal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSM43276_03662 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msal03021
]
DSM43276_03662 (rpoB)
03400 DNA repair and recombination proteins [BR:
msal03400
]
DSM43276_03662 (rpoB)
Enzymes [BR:
msal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSM43276_03662 (rpoB)
Transcription machinery [BR:
msal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSM43276_03662 (rpoB)
DNA repair and recombination proteins [BR:
msal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSM43276_03662 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QCH25388
LinkDB
All DBs
Position
complement(3684088..3687576)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAVSRQTKTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTDSFEWLVGSPRWREVAT
ARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFV
TAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDENIDKST
EKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFS
EIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVGRYK
VNKKLGLGGANPALVTATTLTEEDVVATIEYLVRLHEGQTTMTAPGGLEVPVEVDDIDHF
GNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGT
SQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDEIRYLTADEEDRHVVAQANSPTDEKGR
FTEERVLVRRKGGEVEFVPSTNVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QAVPLVRSEAPLVGTGMELRAAIDAGDVVIAEKAGVIEEVSADYITVMADDGSRQSYRLR
KFARSNHGTCANQRPIVDESQRVEVGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYED
AIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIIRIG
AEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVF
SRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPV
DVILNTHGVPRRMNIGQILETHLGWVAKTGWNIEGNPEWAQNLPEDLQSAPADTRTATPV
FDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYILKLHHL
VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT
VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKEGTTIEMRDGDDEDLE
RAAANLGINLSRNESASIEDFA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctctcgccagactaagaccgataacgcaaccactaactccgtacctggggcg
cctagccgactgtctttcgccaagctgcgtgaaccgcttgcggttcccggcctgctcgat
gtgcagacggattcttttgaatggctggttggctcaccccgatggcgtgaggttgcgact
gctcgcggtgaggtgaacccgaccggcggccttgaggaaatcctcacggagctctcgccg
atcgaggacttctcgggctcgatgtcgctgtcattcagcgacccgcgcttcgacgaggtc
aaggcacccgttgacgagtgcaaagacaaggacatgacgtacgcggctccgctgttcgtc
acggccgagttcatcaacaacaacaccggcgagatcaagagccagacggtcttcatgggt
gacttcccgatgatgaccgacatgggcaccttcatcatcaacggcaccgagcgtgtggtc
gtgtcgcagctggtccgttcgcccggcgtctacttcgacgagaacatcgacaagtcgacc
gagaagaccctgcacagcgtcaaggtcatccccggccgcggtgcgtggctcgagttcgat
gtcgacaagcgagacaccgtcggtgtccgcatcgaccgcaagcgtcgtcagccggtcacc
gtgctgctgaaggcgctcggttggaccaacgagcagatcgttgagcgtttcgggttctcc
gagatcatgatggggaccctggagaaggacaacatcgccggtcccgacgaggcgctgctg
gatatctaccgcaagctgcgtccgggcgagccgccgaccaaggagtccgcgcaggccctg
ctggagaacctgttcttcaaggagaagcgctacgacctggcccgcgtgggccggtacaag
gtgaacaagaagctgggtctgggtggtgctaaccctgctctggtgactgccaccacgctc
accgaggaagatgtcgtcgccaccatcgagtacctggtgcgtctgcacgagggccagacc
acgatgaccgcccccggtggtctcgaggttcccgtagaggtcgacgacatcgaccacttc
ggtaaccgccgtctgcgtaccgtcggcgagctgatccagaaccagatccgggtgggcctg
tcccgcatggagcgcgtcgtgcgtgagcgcatgaccactcaggacgtcgaggcgatcacc
ccgcagaccctgatcaacatccgtcccgtcgtggcggcgatcaaggagttcttcggaacc
agccagctgtcgcagttcatggaccagaacaacccgctctcggggctgacccacaagcgt
cgtctgtcggcgctgggcccgggtggtctgacccgtgaccgtgccggccttgaggtccgc
gacgtgcacccctcgcactacggccgcatgtgcccgatcgagaccccggaaggcccgaac
atcggcctgatcggctcgctgtcggtatatgcgcgggttaatccgttcggcttcatcgag
acgccgtaccgcaaggtggtcgagggtgtcgtcaccgatgagatccgctacctgaccgcc
gacgaagaggaccgccacgtggtggcgcaggccaattcgccgaccgacgagaagggccgc
ttcaccgaggagcgcgtcctcgtgcgccgtaagggcggcgaggtcgagttcgtgccgtcg
accaacgtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgacggccatg
atcccgttcctcgagcacgacgacgccaaccgcgcactgatgggtgccaacatgcagcgc
caggcggtcccgctggtgcgtagtgaggccccgctggtcggtaccggtatggagctgcgt
gctgccatcgacgccggtgacgttgttatcgcggagaaggccggtgtcatcgaagaggtg
tccgccgactacatcaccgtgatggccgacgacggcagccgccagagctaccggctgcgc
aagttcgcgcggtcgaaccacggcacctgcgccaaccagcgtccgatcgtggacgaaagt
cagcgtgtcgaggtcggccaggttctggccgacggtccttgcaccgaaaacggcgagatg
gccctcggtaagaacctgctcgtggcgatcatgccgtgggaaggccacaactacgaggac
gccatcatcctgtccaaccgcctggtggaagaggatgtgcttacctcgattcacatcgaa
gagcacgagatcgatgcgcgcgacaccaagctgggcgccgaggagatcacccgggatatc
ccgaacgtctccgatgaggtgctggccgatctcgacgagcgcggcatcatccgcatcggc
gccgaggtccgcgacggcgacatcctcgtcggcaaggtcaccccgaagggtgagactgag
ctgacccccgaggagcgcctgctgcgtgccatcttcggcgagaaggcccgcgaggtccgc
gacacctctctgaaggtgccgcacggtgagtccggcaaggtcatcggcatccgcgtcttc
tcgcgcgatgacgacgacgatctgcccgccggtgtcaacgagctggtccgggtctacgtc
gcgcagaagcgcaagatctccgacggtgacaagctggccggacgccacggcaacaagggc
gtcatcggcaagatcctgcctgcggaggacatgccgttcctgcccgatggcaccccggtg
gacgtcatcttgaacacgcacggtgtgccgcgtcgtatgaacatcggccagatcctggag
acccaccttgggtgggtggccaagaccggctggaacatcgagggcaaccccgagtgggcg
cagaacctccccgaggatctgcagtcggccccggccgacacccgcacggccaccccggtg
ttcgacggtgcccgcgaggaggagctgaccggactgctgtcctcgacgctgcccaaccgg
gacggcgaggtcatggtggacggtgacggcaaggcgcggctgttcgacggccgtagcggc
gagccgttcccgtacccggtgaccgtcggatacatgtacatcctgaagctgcaccacttg
gtcgacgacaagattcacgcgcgttcgaccggcccgtactcgatgatcacccagcagccg
ctcggtggtaaggcgcagttcggtggtcagcgattcggtgagatggagtgctgggccatg
caggcctacggtgcggcatacacgctgcaggagctattgaccatcaagtccgacgacacc
gtcggtcgagtgaaggtctacgaggcgatcgtcaagggcgagaacatccccgagccgggg
atcccggagtcgttcaaggttctgctcaaggaactccagtcgctgtgcctgaacgtggag
gtgctttccaaggagggcaccaccatcgaaatgcgcgacggcgatgacgaggacctggag
cgcgctgccgcgaacctgggaatcaacttgtcccgcaacgaatctgcgtccattgaggac
ttcgcctaa
DBGET
integrated database retrieval system
