Micropterus salmoides (largemouth bass): 119902466
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Entry
119902466 CDS
T07309
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04510
Focal adhesion
msam04512
ECM-receptor interaction
msam04518
Integrin signaling
msam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119902466 (col6a2)
04518 Integrin signaling
119902466 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119902466 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119902466 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msam04147
]
119902466 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119902466 (col6a2)
Exosome [BR:
msam04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119902466 (col6a2)
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119902466 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
119902466 (col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
119902466
NCBI-ProteinID:
XP_038574603
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MLGLEVIVLCLLFGALTHGQTTECQKKHECPIDVYFTIDTSETIAMQEPPPGSLVESIKE
FTEQFAQRLEDAELKGAVRINWKIGGLHFSQTQQVFSRLASKNDFITGLRGIRYLGKGTY
TDCALTNMTQEMLRSPTYPKALRFAVVITDGHVTGRPCGGIKVAAEKARDEGIRMFVVAA
SKNIEETGLREIANSPATVYRRDFMAVDLSQGRAIIQVDTINRIIKTMQHLAFVECYSVD
CLETDGPPGPKGHRGQKGAKGDNGEPGLKGGRGRPGDPGIEGPIGQPGTKGEPGQTGEKG
EIGTQGKKGVAGIPGRNGTDGQKGKIGRIGAPGCKGDPGDRGPDGYPGDVGERGPPGTDG
EKGDPGRPGRPGPPGLSGEPGPKGERGGSGSPGLPGQKGNKGAEGLPGGRGEPGRRGEPG
QKGGQGPDGVKGEKGEMGPEGLRGLPGEEGKKGAKGDNGLPGPRGPPGTAGEPGKNGTRG
DPGDAGPRGEPGQPGPKGDPGRPGFSYPGPRGPSGDRGNKGNRGPRGGRGDCGQKGDPGN
KGTPGEGGEPGSQGEPGQRGPRGDPGRDGDPGPEGDPGLTECDVMNYIRETCGCCDCEKR
CGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSLAKDPQSDTGTRVGVVQYSHSGT
FQAIRLNDPKIDSMSAFKDAVKRLEWIAGGTWTPSALKYAYDNLIRDSRRAKANVTVVVI
TDGRFDPRDDDSLLTYLCSDPSVDVSAIGIGDMFDQIEENESLKSIACQKDGRVLGMRRF
ADLVAEEFIDKIETVLCPDPVIICPDLPCKSEPAVASCVQRPVDVVFLLDGSERMGLENH
RRAKEFIENVARRLTLANNDSDKKNARLALLQYGSTTEQKVEFPLTHNLTVISDSLASMS
YMDSSSALGSAIIHAVNNLVIPKQDKKARATAELTFVFITDGITASEQLEEGVSAMRRAE
GVPTVIALGKDTDEEVLQKVSLGDSSAIFRGDDYAMLNKPSFFERFVRWIC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgctgggattagaggtcatcgtgctctgtcttctttttggagccctcactcacggacag
acaacagagtgccagaagaagcatgaatgtcccatagatgtgtacttcaccatagataca
tctgagaccattgccatgcaggagccgccccctggatcgctggtggagagcatcaaggaa
ttcactgagcaatttgcacagagattagaagatgctgaattaaaaggtgctgtgcggatc
aactggaagattggtggactacacttctcccagacacagcaagtgttcagtcgccttgca
tcaaagaacgatttcatcacaggtctcagggggatccgttacctgggtaagggtacctac
accgactgcgccctcaccaacatgacccaggaaatgctgcgctcacccacataccccaag
gccctccgatttgctgtggtcatcacagacggccatgtgaccggaagaccgtgcggggga
atcaaagtggcagcagagaaagctcgtgacgagggcatccggatgtttgtcgtggcggca
tcgaagaacattgaagagacggggctcagggagatcgccaactctcctgcgacggtctac
aggagggactttatggctgtggatctaagccagggcagggccatcatacaagtagacacc
attaaccgcatcatcaagacaatgcaacatttggcatttgtagagtgttacagtgtggac
tgtctggagacggatgggcctcccggtccaaaaggccaccgaggacaaaaaggagctaaa
ggagacaacggcgaaccaggtctgaaaggtggaagaggtcgcccaggagaccccggtatc
gagggtcccattggtcaacctggtaccaaaggagagccagggcaaacaggcgaaaaggga
gagataggaactcaggggaaaaagggcgtggctggcatcccaggacgcaatgggacagat
ggacagaagggtaaaattggacgaattggcgctcccggctgcaaaggagacccaggcgac
agaggtcctgacggctaccccggagacgtcggtgaacgtggtccccctggaaccgatgga
gagaagggtgatcccggtcgtcctggaagacctggcccccctggcctgtctggagagcct
ggaccaaagggagagaggggaggttctggatcacctggcctccctggacaaaaaggaaac
aaaggagccgaaggacttccaggaggcagaggcgagccggggagaagaggagaacctggg
caaaagggtggtcaagggccagatggagttaagggagaaaagggtgaaatggggccagag
ggcttgagagggcttccaggtgaagaaggaaagaaaggagcaaaaggagataatggcctg
ccagggcccagggggccaccggggacagcaggagagcctgggaaaaatggtaccagagga
gaccctggtgatgctggaccaagaggagaaccaggacagcctggaccaaagggtgatcct
ggaagacctggctttagttatcctgggccaagaggaccatcgggtgacagaggaaataag
ggcaaccgtggacctcgtggcggcagaggagactgtggtcaaaagggtgaccctggaaat
aaaggaactccgggagagggaggtgaaccagggtctcaaggggaacctggccaaagagga
ccaagaggagaccctggacgtgacggagatcctggacctgagggagatcccggcctcact
gaatgtgatgtcatgaactacatcagggaaacgtgtggctgctgcgactgtgagaaacgc
tgcggagccctggacattgtgtttgtgattgacagctcagagtcagtgggtctgactaac
ttcaccctggagaagaactttgtcatcaacaccatcaacagactgggttcccttgccaaa
gacccccagtcagatacaggcacaagagtgggagttgttcagtacagtcacagtggaacc
ttccaggccatccggctcaacgaccccaagattgattcaatgtctgctttcaaggatgca
gtgaagcgtttggagtggatcgctggaggaacatggactccatctgctttgaagtatgcc
tacgacaacctgatcagggacagccgcagagccaaagccaacgtcactgtagttgtcatc
actgacggacgcttcgaccccagagatgatgactcgctgctcacctacctctgcagtgat
cccagtgttgatgtgagtgccatcggaatcggagacatgtttgaccagatcgaggagaat
gagagcctgaagagcattgcttgccagaaggatggcagggtgctgggcatgaggcgcttt
gcagacctggtagctgaggagttcattgacaaaattgaaaccgtgctctgcccagatcct
gtcatcatatgcccagatctcccttgtaaatcagagcctgctgtggctagctgtgttcag
cgaccagtggatgtggtgttcctgttggatggttctgagaggatgggactggagaaccac
cgcagggccaaagagttcattgagaatgtggctcgccgcctcaccctggcaaacaacgat
tcagacaagaagaatgcccgcttggctctgctgcagtatggcagcactacagaacagaag
gtggagttccctctcacacacaatctcacagtgatctcggattcgctggcatctatgtcc
tatatggattcctcttctgctctgggcagcgccatcatccatgctgtcaacaatctggtg
attccaaagcaggataaaaaggctcgtgccaccgctgagctgacctttgtattcatcact
gatggcatcacagccagcgagcagctagaagagggcgtgtctgccatgaggcgagcagaa
ggcgttccaacagtgattgccctgggaaaagacacagatgaggaggtgctgcagaaggtg
tcgctaggggactcgtctgccatctttagaggagatgactacgccatgttgaacaaaccc
tcattctttgagcgttttgtccgctggatatgctag
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