Micropterus salmoides (largemouth bass): 119904026
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Entry
119904026 CDS
T07309
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119904026 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msam03041
]
119904026 (prpf40a)
Spliceosome [BR:
msam03041
]
Complex A
U1 snRNP components
U1 related factors
119904026 (prpf40a)
Complex B
119904026 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
119904026
NCBI-ProteinID:
XP_038576319
LinkDB
All DBs
Position
Unknown
AA seq
879 aa
AA seq
DB search
MSSSEANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVDTTTAAPGTASTT
NGSPQDEQPKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTTEAVPPGTAAAPAVQADNTATM
ATVMEAETATAVSEEHLSQAAVHHTAEVKSADAPVASSESSAPTEATASIEVTKEERPEL
QKKVYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPETTWEGIRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDEYHKKKKRSQSKSPSERSSSAESERS
YKKSKKHKKKGKKRRHKSASPDSDNEKKGRERDGKREKDLEKDKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagccaagcaccaccttatccaggtgtaccg
ccctcagggattcctcccccatttatgggaccaccaggaataccgcctcattttcctccc
attggaatgccccctatgggacaacgaccacccagcatgactccaatgccacctggtata
attccccctggtataatgccaccaatgggagcaccaccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcatgccagctgcggctgtacaa
ccaacggggccgcctggtgttgacaccacaactgctgcacctggaacagctagtaccaca
aatggatctccacaggatgaacagccaaagaagaaatccctgtggacagaacacaaatca
ctggatgggaaaacctattactacaatacagagaccaagcagtccacttgggagaaaccg
gatgaactcaaatctcctgcagagcaaatgctgtctaaatgcccttggaaggagtacaag
tcagacacagggaagccttactattacaactctcagacgaaggagtccagatggaccaaa
cccaaagagctggaggatcttgaagctatgatcaaagcagaggagaatggaacgacagag
gcagtgcctcctggcaccgcagcagctcctgcagtgcaagcagataatacagccactatg
gcaaccgtaatggaggcggaaactgcaacagcagtctcagaggaacacctgtctcaggcg
gcagtgcatcacacagctgaggtcaagtctgcagatgcacctgtggcttcctctgagagc
tcagcccccacagaggccacagccagtattgaagtcacaaaggaagaacgaccagaactt
caaaagaaagtgtacaaatggaacacgaaagaggaggccaagcaggccttcaaagaactg
ctgaaggagaagggtgtgtcctcaaactcctcttgggaacaggctatgaaaatgattatc
aatgatccccgctacagcgcacttcctaaactgagtgagaagaaacaggcgttcaatgcc
tacaaagtccaaacagagaaggaagaaaaagaggaggctagaattaaatacaaggagtct
aaagagacctttcagaggttcttggagaaccacgagaagatgacatcaaccaccagatac
aagaaagcagaacagatgtttggtgagcttgaggtgtggagctgtgtaccagagagagac
agactggagatctatgaagatgtattgttctaccttgctaagaaagaaaaggagcaagcc
aagcaactaagaaagcggaactgggaagctctgaagaacattttggacaacatggccaac
gtcacataccgcaccacctggtctgaggcccagcagtacctgctagacaaccctaccttt
gcagaggatgaggagctgcagaatatggacaaagaggatgccctcatttgttttgaggag
cacatccgggcgctagaaaaggaggaggaggaagagaaacagaagactcttctcagggag
aggagacggcaacgcaagaaccgagaggccttccagaaattcctggatgagctgcacgac
catggtcaacttcactccatgtctgcctggatggagatgtacccgaccctgagctcagac
atccgctttgccaacatgctgggccagccgggttccactcccctggatctgttcaaattc
tatgtggaagacttgaaggcccgctaccatgatgaaaagcggatcatcaaagatatcctt
aaggacaaaggctttctggtcgaagtcaacactagctttgatgactttgggtctgtcatc
agttcagacaagagagccaccacactggatgcaggaaacataaagctggccttcaacagt
ttattggagaaggcagaagccagagagagagagcgagaaaaggaggaggccaggaagatg
aaaaggaaagaagcagcctttaaaaacatgctgaagcaggccacaccaccactggagcct
gagactacatgggaagggatcagagagagattcttaaaagaatctgcctttgaagatgtg
actctggagtcggagaggaaaaggatattcaaagacttcatgcacgtcttagagcatgaa
tgccaacatcaccactccaagacaaagaagcactcgaagaagtccaagaagcaccacagg
aaacgatcccgctctcgatctggctcagagtctgaggatgatgagtaccacaagaagaaa
aagaggtcacagtccaaatctccctctgaacgctcgtctagtgcagaatctgaaagaagc
tataaaaaatccaagaagcacaagaagaagggcaagaagagacgtcacaagtccgcatcg
ccagactccgacaatgagaagaaaggaagagagcgtgatggaaagcgtgaaaaagaccta
gagaaagataaagagaacgacaagtctcgggggaaatctcgctcagactctaaacagaag
tctcctaaaagaaaagcggcaaaagaggagggaggttgggatacgtcaggcagtgagctg
agtgaaggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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