Mycolicibacterium sarraceniae: MSAR_25270
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Entry
MSAR_25270 CDS
T07083
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
msar
Mycolicibacterium sarraceniae
Pathway
msar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSAR_25270 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msar03021
]
MSAR_25270 (rpoB)
03400 DNA repair and recombination proteins [BR:
msar03400
]
MSAR_25270 (rpoB)
Enzymes [BR:
msar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSAR_25270 (rpoB)
Transcription machinery [BR:
msar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSAR_25270 (rpoB)
DNA repair and recombination proteins [BR:
msar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSAR_25270 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
DUF5560
Motif
Other DBs
NCBI-ProteinID:
BBY59391
UniProt:
A0A7I7SSP8
LinkDB
All DBs
Position
2455030..2458509
Genome browser
AA seq
1159 aa
AA seq
DB search
MAVSSQSKTTTTSNSVPGAPKRISFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRAIAEA
RGDVNPVGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVT
AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDDTIDKSTE
KTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIRERFGFSE
IMMSTLEKDNTAGSDEALLDIYRKLRPGEPPTKESAQTLLENLFFKDKRYDLARVGRYKV
NKKLGLNAGQPITSSTLTEEDIVATIEYLVRLHEGQTTMTAPGGVEVPVEVDDIDHFGNR
RLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL
SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNIGL
IGSLSVYARVNPFGFIETPYRKVVDGAVTDEIHYLTADEEDRHVVAQANSPTDDKGRFTE
DRVLVRRKGGEVENVTPAEVDFMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV
PLVRSEAPLVGTGMELRAAIDAGDVVVTDKAGVVEEVSADYITVMADDGTRHTYRMRKFA
RSNHGTCANQRPIVDAGQRVESGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYEDAII
LSSRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIIRIGAEV
RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRLFSRE
DDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILAVEDMPFLPDGTPVDII
LNTHGVPRRMNIGQILETHLGWVAKAGWNIEGAPEWAANLPEDLHRSEPDSIVSTPVFDG
AREEELQGLLSSTLPNRDGEVLVNGDGKAVLYDGRSGEPFPYPVTVGYMYILKLHHLVDD
KIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGR
VKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLERAA
ANLGINLSRNESASVEDLA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctctagccagagcaaaacgactactacttctaactccgttcccggagcacca
aaacgaatttccttcgccaagctgcgcgagcctctcgaggtacccggcctgctcgacgtc
caaacggactcgttcgagtggctgatcggctcgccgcgctggcgcgcgatcgctgaggcg
cgtggtgacgtcaacccggtgggtggcctcgaagaggtcctcaccgagctgtcgccgatc
gaggatttctcgggctcgatgtcgctgagcttctccgacccgcgtttcgacgaggtcaag
gctccggtcgacgagtgcaaagacaaggacatgacgtacgcggccccgctgttcgtcacg
gccgagttcatcaacaacaacaccggtgagatcaagagccagacggtcttcatgggtgac
ttcccgatgatgaccgagaagggcaccttcatcatcaacggcaccgagcgtgtcgtggtg
agccagctggtccgttcgccgggtgtgtacttcgacgacaccatcgacaagtccaccgag
aagacgctgcacagcgtcaaggtgatccccggccgcggtgcgtggctggagttcgacgtc
gacaagcgcgacaccgtcggggtgcgtatcgatcgcaagcgccgccagccggtcaccgtg
ctgctcaaggcgctcggctggaccaacgagcagatccgggagcgcttcggcttctccgag
atcatgatgtcgacgctggagaaggacaacaccgccggctccgatgaggcgttgctggat
atctaccgcaagctgcgtccgggcgagccgccgaccaaggagtccgcgcagaccctgctg
gagaacctgttcttcaaggacaagcgctacgacctggcccgggtgggccgctacaaggtc
aacaagaagctgggcctcaacgcgggccagccgatcaccagctcgacgctgaccgaagag
gacatcgtcgcgaccatcgaatacctggtgcgcctgcacgagggccagaccacgatgacc
gcccccggtggcgtcgaggtcccggttgaggtcgatgacatcgatcacttcggtaaccgt
cgtctgcgtaccgtcggcgagctgatccagaaccagattcgggtcggcctgtcccgaatg
gagcgcgttgtccgcgagcggatgaccactcaggacgtcgaggcgatcacgccgcagacc
ctgatcaacatccgtcccgtcgtggcggcgatcaaggagttcttcggtaccagccagctg
tcgcagttcatggaccagaacaacccgctgtcgggtctgacccataagcgccgcctgtcg
gcgttgggtccaggtggtttgtcccgtgagcgcgccggccttgaggtccgcgacgtgcac
tccagccactacggccggatgtgcccgatcgagacccctgaaggtcccaacatcggtctg
atcggttcgctgtcggtgtacgcccgggtcaacccgttcggcttcatcgagaccccgtac
cgcaaggtcgtcgatggtgcggtcaccgatgagatccattacttgactgccgacgaggag
gaccgccacgtcgtggcgcaggccaactcgccgaccgatgacaagggtcgtttcaccgag
gaccgcgttctggtccgtcgtaagggtggcgaggtcgagaacgtcacgcccgccgaggtt
gacttcatggacgtctcgccgcgccagatggtgtcggtcgcgacggcgatgatcccgttc
ctcgagcacgacgacgccaaccgcgctctgatgggtgccaacatgcagcgccaggcggtt
ccgctggtgcgcagcgaggcaccgctggtgggcaccggtatggaactgcgtgcggcgatc
gacgccggcgacgtggtcgtgaccgataaggctggggtggtcgaagaggtctccgccgac
tacatcaccgtgatggccgacgacggcacccggcacacctaccggatgcgcaagttcgcc
cgctccaaccacggcacgtgcgccaaccagcgcccgatcgtggacgccgggcagcgggtc
gagtcgggccaggtactggccgacgggccgtgcaccgagaacggtgagatggcgctgggc
aagaacctgctcgtggcgatcatgccgtgggaaggccacaactacgaggacgcgatcatc
ctctcgtcacgcctggttgaggaggacgttttgacgtccatccatatcgaggagcacgag
atcgatgcccgcgacaccaagttgggcgccgaggagatcacccgggacatcccgaacgtc
tccgatgaggtgctggccgatctcgacgagcgcggcatcattcgcatcggtgccgaggtc
cgcgacggcgacatcctggtcggcaaggtcaccccgaagggcgagaccgagctgacccca
gaggagcggctgctgcgcgcgatcttcggtgagaaggcgcgcgaggtacgagacacgtcg
ctcaaggtgccgcacggtgagtccggcaaggtcatcggtatccggttgttctcccgggag
gacgacgacgagctgcccgcaggcgtcaacgaactggtccgcgtctacgtggcccagaag
cgcaagatctccgacggtgacaagctcgccggacgccacggcaacaagggcgtcatcggc
aagatcctggcagtcgaggacatgccgttcctgccggacgggacccccgtcgacatcatc
ctgaacacgcacggtgtgccgcgacggatgaacatcggtcagatcttggagacccacctc
gggtgggtggccaaggccggctggaacatcgagggtgctcccgagtgggcggcgaacctg
cccgaggatctgcatcgctccgagccggacagcatcgtctctacgccggtgttcgacggg
gcccgcgaagaggagctgcagggtctgctgagctcgacgctgcccaaccgtgacggtgaa
gttctggtcaacggtgacggcaaggccgtgctgtacgacggccgcagcggcgaaccgttc
ccgtacccggtgacggtcggctacatgtacatcctcaagctgcaccacttggtggacgac
aagatccacgcccgctcgactggtccgtactcgatgatcacccagcagccgctgggtggt
aaggcgcagttcggtggtcagcggttcggtgagatggagtgctgggccatgcaggcctac
ggcgcggcgtacacgctgcaggagctcttgaccatcaagtccgacgacaccgtcggccgg
gtcaaggtctacgaggcgatcgtcaagggcgagaacatccccgagccgggtattccggag
tcgttcaaggtgctgctcaaggagctgcagtcgctgtgcttgaacgttgaggtgctgtct
tcggacggcgcggcaattgagatgcgtgacggtgacgatgaggacctggagcgcgctgcc
gcgaacctgggaatcaacctgtcgcgcaacgaatctgcctctgtcgaagatcttgcctaa
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