Microbacterium sediminis: E3O41_11780
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Entry
E3O41_11780 CDS
T06576
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msed
Microbacterium sediminis
Pathway
msed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3O41_11780 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msed03021
]
E3O41_11780 (rpoC)
03400 DNA repair and recombination proteins [BR:
msed03400
]
E3O41_11780 (rpoC)
Enzymes [BR:
msed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3O41_11780 (rpoC)
Transcription machinery [BR:
msed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3O41_11780 (rpoC)
DNA repair and recombination proteins [BR:
msed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3O41_11780 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
MutS_III
Motif
Other DBs
NCBI-ProteinID:
QBR75009
LinkDB
All DBs
Position
complement(2451345..2455220)
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDATTFDELRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDAEARHRDMPSHENNLRLEIKTLGDRRDAKIAERLQKLEDE
LAALEAEGAKADQKKKVKDAAEKEMTTIRKRADESIARLERVWEEFRNLEVGQLKAEDDV
FQELQDRFGQYFEALMGAESIQRRLAEFDLAAEAESLRTQIAEGKGQRKIRAIKRLKVVQ
SFLTTGMSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTLKEGAKGEGR
VFGSVAEAQLAKDEGTLDLQAKVRIRIPGLTFLEGQAPEGYETHGLVDTSLGQAIFNDQL
PKGYPFVREQADKGKLSQIVNKLAEEYPKVVTAETLDKIKDAGFYWATRSGVTVALSDVL
TPPNKREIVAKHEKLAEKVNSQYAKGLITDAERRQELIQVWTEATDEVQKAMRDNFPADN
TINRMVTSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSAAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTTKGLEYPIAAFDANGTLVKDANVE
NAVFARTLATPVVAEDGTVLAEAGSDVGDVLIDKLVEAGVESIKVRSVLTCDSAVGVCAQ
CYGRSLATGKIVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGATPIAEADGRITIEETDKQKKVILTPDNGDEVKVYPVLKRATLLVEDGQHVTV
GQPLQVGTLDPKEIMRVQGAREVQKYLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGETDLLPGELVDIKRYQEINRAAVAEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTEAALQGKRDPLVGLKENVIIGKLIPAGTGLAKYRNVVVEATEEAKSERYPNRI
FASDGAFAEGDYGFVDFDAFSSDDFTPGSYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaactactttcgatgagcttcgcatcggcctggcgaccgccgacgacatc
cgtcgctggtccttcggtgaggtcaagaagcccgagacgatcaactaccgcaccctgaag
cccgagaaggacggtctgttcggtgagcagatcttcggcccctcgcgcgactgggagtgc
gcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgctgcggtgtg
gaggtgaccaagagctccgtccgtcgcgagcgcatgggccacatcgagctcgccgcgccc
gtcacgcacatctggtacttcaagggcgtgccctcgcgcctgggttacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtgatctcggtcgac
gccgaggcgcgtcaccgcgacatgcccagccacgagaacaacctccgcctcgagatcaag
acgctcggcgaccgccgtgacgccaagatcgccgagcgccttcagaagctggaagacgag
ctcgcggccctcgaggccgagggcgccaaggccgaccagaagaagaaggtcaaggacgcc
gccgagaaggagatgacgacgatccgcaagcgcgcggacgagtcgatcgcccgtctcgag
cgcgtgtgggaggagttccgcaacctcgaggtcggccagctcaaggcggaggacgacgtc
ttccaggagctgcaggaccgcttcggtcagtacttcgaggccctcatgggtgcggagtcg
atccagcgccgcctcgccgagttcgacctggccgccgaggccgagtcgctgcgcacgcag
atcgccgagggcaagggccagcgcaagatccgcgcgatcaagcgcctcaaggtcgtgcag
tcgttcctgacgaccggcatgtcgccggccgccatggtcctcgacgtcgtcccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgtcgcctcatcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtcccgtcacgggcaccggcaaccgcgccctgaag
tccctgagcgacatgctcaagggcaagcagggtcgcttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctg
atcgacctcggtcactcgcagaacatcaaggccgccaagcgcgccgtcgagcgcacgcgt
cccgaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctcaaccgc
gcccccacgctgcaccgcctgggcatccaggcgttcgagccgcagctcgtggagggcaag
gcgatccagctgcacccgctcgtctgcgcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgcccctgtcggtcgaggcccaggccgaggcgcgcatcctcatgctc
gcctcgaacaacatcctcaagccgtcggacggccgcccggtgaccctgccctcgcaggac
atgatcatcggtctgcaccacctgaccaccctcaaggagggcgcgaagggtgagggccgc
gtgttcggctcggtcgccgaggcgcagctggccaaggacgagggcaccctcgacctgcag
gccaaggtgcgcatccgcatcccgggtctgacgttcctcgagggccaggcgcccgagggc
tacgagacccacggcctcgtcgacacctcgctcggccaggcgatcttcaacgaccagctg
ccgaagggctaccccttcgtgcgcgagcaggccgacaagggcaagctctcgcagatcgtg
aacaagctggccgaggagtacccgaaggtcgtcacggcggagacgctcgacaagatcaag
gacgccggcttctactgggccacccgctcgggtgtcaccgtggcgctcagcgacgtgctc
accccgccgaacaagcgcgagatcgtcgccaagcacgagaagctcgccgagaaggtcaac
agccagtacgcgaagggtctcatcaccgacgccgagcgtcgccaggagctcatccaggtc
tggaccgaggccacggacgaggtccagaaggcgatgcgcgacaacttcccggcggacaac
accatcaaccgcatggtgacctcgggtgcgcgtggtaactggctgcagatccgcaacatc
gcgggtatgcgaggcctggtgaacaacccgaagggtgagatcatccctcgcccgatcatc
tcgtcgtaccgcgagggtctgtcggcggcggagtacttcatcgccacgcacggtgcccgc
aagggtctggccgacaccgctctgcgtacggccgactcgggttacctgacccgtcgtctc
gtggatgtgtcgcaggacgtcatcatccgcgaggaggactgcggcaccacgaagggcctc
gagtacccgatcgcggcgttcgacgcgaacggcaccctggtcaaggacgccaacgtcgag
aacgcggtgttcgcccgcacgctcgcgaccccggtcgtggcggaggacggcacggttctg
gccgaggcgggctcggacgtgggcgacgtgctcatcgacaagctcgtcgaggcgggcgtg
gagtccatcaaggtgcgctcggtgctcacctgcgactcggccgtcggcgtctgcgcgcag
tgctacggccgctcgctggccaccggcaagatcgtcgacatcggcgaggccgtgggcatc
atcgccgcccagtcgatcggtgagcccggcacgcagctgacgatgcgtaccttccacacc
ggtggttcggcctcggccgacgacatcacgcagggtctgccccgcgtgcaggagctgttc
gaggcccgcacccccaagggcgcgaccccgatcgccgaggccgacggccgcatcaccatc
gaggagaccgacaagcagaagaaggtcatcctcacgcccgacaacggcgacgaggtgaag
gtctacccggtcctgaagcgtgcgacgctcctcgtcgaggacggccagcacgtcacggtc
ggtcagccgctccaggtcggcacgctcgacccgaaggagatcatgcgcgtgcagggtgcc
cgcgaggtgcagaagtacctcgtcggcggcgtgcagggcgtgtaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtgcgccagatgctgcgcaaggtcaccgtc
gtcgaccacggcgagaccgacctgctgcccggtgagctggtggacatcaagcgctaccag
gagatcaaccgtgcggccgtggccgagggcaagcgccccgcgtcgggtcgtccggagctg
atgggtatcacgaaggcgtcgctcgcgacggagtcgtggctgtcggccgcgtcgttccag
gagaccacccgcgtcctcaccgaggccgcgctccagggcaagcgcgacccgctcgtcggc
ctcaaggagaacgtgatcatcggaaagctgatccccgccggcaccggccttgcgaagtac
cgcaacgtcgtggtcgaggcgacggaggaggcgaagagcgagcggtaccccaaccgcatc
ttcgcctcggacggcgccttcgccgagggcgactacggcttcgtcgacttcgacgcgttc
tcgtcggacgacttcaccccgggttcgtacaactga
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