Mycolicibacterium sediminis: MSEDJ_35080
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Entry
MSEDJ_35080 CDS
T07629
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSEDJ_35080 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msei03019
]
MSEDJ_35080 (pnp)
03016 Transfer RNA biogenesis [BR:
msei03016
]
MSEDJ_35080 (pnp)
Enzymes [BR:
msei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
MSEDJ_35080 (pnp)
Messenger RNA biogenesis [BR:
msei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MSEDJ_35080 (pnp)
Transfer RNA biogenesis [BR:
msei03016
]
Prokaryotic type
tRNA degradation factors
MSEDJ_35080 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
KhpA-B_KH
KH_5
Motif
Other DBs
NCBI-ProteinID:
BBY29412
UniProt:
A0A7I7QT34
LinkDB
All DBs
Position
3634464..3636737
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AA seq
757 aa
AA seq
DB search
MSAVEIEDGVYEATAVIDNGSFGSRTIRFETGRLAKQAAGAVVAYLDDETMLLSATTAGK
SPKDHFDFFPLTIDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPTFVSGLR
NEIQVVVTILSLDPKDLYDVLAINAASASTQISGLPFAGPVGGVRVALIDGQWVAFPTVE
QLEGAVFDMVVAGRKAGDDVAIMMVEAEATDRVIELVAGGAKAPTEAVVAEGLEAAKPFI
AALCDAQAELAAAAGKETADYPLFPDYQDDVFYAVSSVATDELSKALTIAGKEERNDRTD
EIKAEVLSRLADTYAGREKEIGAAYRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVA
VIPRAHGSAIFERGETQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGR
VGSPKRREIGHGALAERALMPVLPSIEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLN
AGVPLKAPVAGIAMGLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTA
LQLDTKLDGIPSSVLAGALAQAKDARITILEVMAEAIDEPDEMSPYAPRITTIKVPIDKI
GEVIGPKGKMINSITEETGASISIEDDGTVFVGASNGEAAQAAIDKINAIANPQLPKTGE
RFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGRGKRINKVEDVVKVGDKLRVEIADIDNR
GKISLVLVAEDEAAEAPANGSSPDAAAAPADAATADS
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcagtagaaatcgaagacggcgtctacgaagccaccgcagtcatcgacaacggg
agcttcggctcccgcaccatccgtttcgagaccggtcggctggccaagcaggccgccggc
gccgtcgtcgcctacctcgacgacgagaccatgctcctgtcggccaccacggccggcaag
tcgccgaaggaccacttcgacttcttcccgttgaccatcgacgtcgaagagcggatgtac
gccgcgggacgcatccccggctcgttcttccgccgtgagggacgcccctcgacggacgcg
atcctgacctgccgcctgatcgaccggccgctgcgcccgacgttcgtgtcgggtctgcgc
aacgagatccaggtcgtcgtcaccatcctgagcctggaccccaaggacctgtacgacgtc
ctggcgatcaacgcggcgtcggcctcgacccagatctcgggtctgccgttcgccggcccc
gtcggtggcgtacgcgtggcgctcatcgacggccagtgggtcgcgttccccaccgtcgag
cagctcgagggtgccgtgttcgacatggtcgtcgcgggtcgcaaggccggtgacgacgtc
gcgatcatgatggtcgaggccgaggccaccgaccgggtcatcgagctcgtcgccggtggc
gccaaggctccgaccgaggccgtcgtggccgaggggctcgaggcggccaagccgttcatc
gcggccctgtgcgacgcgcaggccgagctggccgccgccgccggcaaggagaccgccgac
tacccgctgttccccgactaccaggacgacgtgttctacgcggtgtcctcggtcgccacc
gacgagctgtcgaaggcactgacgatcgcgggcaaggaagagcgcaacgaccgcaccgac
gagatcaaggccgaggtgctctcacgtctcgccgacacctacgccggacgcgagaaggag
atcggcgccgcgtaccgctcgctgaccaagaagctggtccgccagcgcatcctgaccgac
cacttccgcatcgacggtcgcggcatcaccgacatccgcgcgctgtcggccgaggtcgcc
gtcatcccgcgtgcgcacggcagtgcgatcttcgagcgcggcgagacccagatcatgggc
gtcaccactctcgacatggtcaagatggctcagcagatcgactcgctggggccggagacg
tccaagcgctacatgcaccactacaacttcccgccgtactcgaccggtgagaccggtcgc
gtcggatcgcccaagcgccgcgagatcggccacggtgccctggcagagcgtgcgctgatg
ccggtgctgccgtccatcgaggagttcccctacgcgatccggcaggtgtcggaggcgctc
agctcgaacggctccacgtcgatgggctcggtgtgtgcgtcgacgctgtcgctgctcaac
gccggcgtgccgctcaaggctcccgtcgcgggcatcgcgatgggcctggtgtccgacgac
gtcgaggtcgacggcaagacggagcgtcgcttcgtcacgctgaccgacatcctcggcgcc
gaggacgcgttcggcgacatggacttcaagtgcgcaggcacgaaggacttcgtcaccgcg
ctgcagctcgacaccaagctcgacggcatcccgtccagcgtgctggccggtgccctggcg
caggccaaggacgcccgcatcaccatcctcgaggtcatggccgaggccatcgacgagccc
gacgagatgagcccgtacgcgccgcgcatcacgaccatcaaggtcccgatcgacaagatc
ggcgaggtcatcgggccgaagggcaagatgatcaactcgatcaccgaggagaccggcgcg
tcgatctccatcgaggacgacggcacggtgttcgtcggtgcgagcaacggcgaggcggcg
caggcggcgatcgacaagatcaacgccatcgccaacccgcagctgcccaagaccggcgag
cggttcctcggaaccgtggtcaagacgacggacttcggtgcgttcgtctcgctgctgccc
ggtcgcgacggcctggtccacatctcgaagttgggccgcggcaagcggatcaacaaggtc
gaggacgtggtgaaggtcggcgacaagctccgcgtcgagatcgccgacatcgacaaccgt
ggcaagatctcgctggtgctcgtcgccgaggacgaggccgccgaggccccggccaacggc
tcgtccccggatgcggctgcagcgcctgccgatgccgcgaccgcggacagctga
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