Manduca sexta (tobacco hornworm): 115455773
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Entry
115455773 CDS
T07401
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115455773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115455773
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115455773
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115455773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Adenyl_transf
Motif
Other DBs
NCBI-GeneID:
115455773
NCBI-ProteinID:
XP_030040328
LinkDB
All DBs
Position
27:13195620..13215995
Genome browser
AA seq
2392 aa
AA seq
DB search
MNLDSLTFSLSQINYLVVNLNKKNFKQTSQELSQLVSLYGLEAENQLLRCLLSEAGKTLW
DSDRPSSTYNSIHASLLGQHLASLLHHPAKSTVVCRAVDQPARALQKVLKPSNALLNRLS
RLLKLTTAEDVAFSLVLRRNSTKSEIVSLAKQHLKKRFLDLVQCYLDAERGHQVERAGLQ
ECSPEVLQTLLTSLAHENFRLAAVTKDLFLKRLRGDFPREVVPIVLAPLLYPDDTQTPLE
EMTTADDMAVAMMDNSLAEIIREIGYAFTSSVEECKNHMLNFGAREPTAIDVARIISVMI
RYHTSGIPVPEVPPIQTPGNYWMTHESKKDLQNEWNAEVFVQTLKDLASNLNWKEVILQL
DHPEFLVPDRIGLSLLFTILRMGLQSAGYPANVFPTEYLYRRWTNLDGQMSLITHVLKHP
DIFSFADYPYHPVSIDILKSPPEVDNKEVGTWRCLYLIELLIHAAERGYYMQVHELFKMP
LQHCPDILLLALIQIGPPITVFRTELLTTLFPIFLGNHPNSGIVLHHAWHTQNPNVKPLI
MHAMADWYLRGESDQSKLSRILDVAQDLKALSLLLNVQSFPFVIDLACLASRREYLKLDK
WLTDKIRDHGESFVSAMVKFLQRRCPQILGKGPEEQLPKAAQLPPDTITTMLACLQLCIP
NVQPELQEAIYNVIAACQTVILSKTRSNIAGIARPHNRILETPFNPAGLGGQLFTPHVDP
IVNLTPNVANLSLGAPGNTAFAMPGTLGPLVTAPGSPVRLMGAGPNSPFAMMPIQHNPNV
ANIGALARMAPAPMMDKPRLPDPIHFPEMMHNVAKEIEDEANGYFQRIYNHPPHPTLSID
EVLDMLKKFQDSPSKREREVFSCMLRNLFEEYKFFPQYPDKELHITAQLFGGIIEKGLVP
SYVSLGLALRFVLDALRKAEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFSEFPP
HLIEYVEYGLQSQEPPTKPQGPVLPASLAAMLNQTAVVTVTAPYRAMVCAPAAISVMSKV
AVCPGGSLGSRPSIANATNIDTLLTATDREEKINSPPEPIQDKTAFIFNNLSQLNLQTKC
EELKEIITEEYFPWLSQYLVMKRASIELNFHALYSNFLDVLKIREINKMVTKETYRNIRV
LLRSDKGIANFSDRSLLKNLGHWLGMLTLARNQPILHVDLDLKALLLEAYHKGQQELLYV
VPFVAKVLESCAKSVVFKPPNPWTMALMNVLAELHQEPDLKLNLKFEIEVLCKNLSLDIA
NLKPSIYLKDPEKLRLIEFQLSQPKPNKEVVAAMPVNQSMVPPPQMTMMPPPMIPTEDMT
VPAPMPTGGLVPNDPHLMGVLGLPEPRFNYLDVNVSSTSAFGQKISFNPHIILFQNYPHL
KQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVRMRTCAHHMMRNLT
AGMAMITCREQIISTISANLKTAFITALMPSTQQQKEIIESAAAVLATENMELACAFIQK
TAVEKALPELDKRLMNDYEMRKIARQEGRRYYDAMVVSYQTERIPERVRLRVGGPVDLQI
SVYDEFACNIPGFVPVRDAGIFIPKPSAQEQMPQLTFSQVINPAQLYGTDEMSALITSAE
MFLANSLGVASLTMQSANMHALLECMFIARRNRDIVSGCTLLQKAVEGILDGHIVQSAVS
SEHIEMMGRYRDIHLRVLKLLEDARVYGHVWTTKQITCCITECREELRYNIEAVDCLIRN
HLVNMPQYDIAMAHMMDNGNNYMAVAFAMQLVQLYLVDDRNNMYVNESDLYHTTETLVRI
VSMSRQPPPEGLGSLIEILRVNQDPSAYLGERSPLGPTAHIHSGILQVRSQNYDDPPGLQ
EKTENLLREWRNVLLSPLTEIELAQNFNLYVHRMNMNGILKSDDMITRFFRIATQMCIEN
VYQQLNEDRLNPPPVPPKRDKYYTMCDSFIKLVSLLIKNTADSGNPTPKLNLLNKILGII
AGCLLQDHEEHGVNFQQLPYHRLLLILFLDMNMAEPVLESMNYQILTAFCHTLRIIRPGV
APGFCYAWLEVVAHRAFVNRVLAVTPQQKGWGMYSTLLIDLFKFLDPFLRNTELAAPVMM
LYKGTLKVLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNLILSAFPRNMRLPDPFTPNL
KVDLLAEITLSPRAVVNYATMIPSSQFKKDLDAYLKARAPVTFLSELRSNMQISDDPAAT
EPGRRYNSQLMNAVVLYVGTQAIAHIRAKGQTPNMSTIAHSAHMDIFQNFTVDFDYEGRY
LFLNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRMLLERLIVNRPHPWGLLI
TFIELIKNPIYKFWTHEFVHCAPEIEKLFASVARSCISDKAGGGGLEREIAE
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactctttaacgtttagcttatctcaaatcaattatcttgtcgtaaattta
aacaagaagaactttaagcagacgagtcaagagttgagtcagcttgtcagtctatatggg
ctggaagcagaaaatcaactcttgaggtgcctgctttctgaggcaggaaagacactctgg
gacagtgatcgtcccagctcaacatacaatagcatccacgcatcacttttaggacaacat
ttggcgtctctgctccatcaccctgcaaaatcgactgtagtctgcagggcggttgaccag
cccgctcgcgcacttcagaaggtattaaaaccctcaaatgcgttacttaatcgactatcg
aggttgttgaaattaactacagcagaggatgttgcgttctccttggtgttgagacgcaat
tccacaaagagtgaaatcgtatcacttgcaaaacaacatttgaagaaaagatttttggat
ctagtgcagtgctatctcgacgcagaacgaggtcatcaagtggagcgagcaggacttcag
gaatgcagccctgaagttttgcaaacactacttaccagccttgcacacgaaaattttaga
ttggcagcagtgactaaggatttgtttttgaagcgattgagaggcgactttcctagagaa
gtagtgccgatcgtactcgctcctctgttgtatccggacgatacccagactcctcttgag
gagatgaccacagctgacgatatggccgtagccatgatggacaactcgttagcggagatc
attcgagaaatcggatacgcgtttacgtcatcggtagaagaatgcaagaaccacatgttg
aattttggcgcacgagagccgacagctatagatgtagccaggattatatctgtcatgatt
aggtatcatacatctggtataccagtaccagaagtaccaccaatacagacgcctggtaac
tattggatgacccatgagtccaaaaaagatctacaaaatgaatggaacgccgaagtcttt
gtacagacattgaaagatctcgcatcgaatctaaattggaaagaagtaatattacaactg
gatcatccagagttccttgtccctgatagaattggcttgagcctcctctttaccattcta
cgaatgggtttgcagagtgctggatatccagcaaacgtatttcccacagaatatctttat
cgtagatggacaaacctggatggacagatgtcgcttatcacccacgtactaaagcatcca
gacatcttcagttttgccgattacccctatcaccctgtatcaatagacatattgaagtca
cctcctgaagtagacaacaaggaagtgggaacatggcgttgcctgtatttgatagaatta
ctaatacatgccgccgagcgtggttattacatgcaagttcacgaactattcaagatgcca
ctccagcattgtcccgacattctgctgttggcattaatacagataggcccgcctatcact
gttttcagaacggagttgttaacaactctttttccaatttttttaggaaatcatccaaac
tcaggcatcgtcctgcatcacgcttggcatacacaaaatcccaatgtaaagcctctcatt
atgcatgcaatggccgattggtatctgcgtggtgaaagtgatcagtccaaactgtccagg
attctggatgtggcgcaagatttaaaggctctttcccttttgttaaatgttcaatcattc
ccattcgtgattgacctggcgtgcttagcgtctaggcgagaatatctcaaattagacaag
tggttgaccgataaaataagggatcatggcgaatctttcgtctcagctatggtgaagttt
ttacagcggcgatgtccgcaaatactgggcaagggtccagaggagcaattgccgaaggcc
gcacaactgccgccagacaccatcactactatgttggcttgccttcagctatgtattcct
aatgtgcagccagagttgcaggaagccatatacaacgtaatagccgcttgccagaccgta
atactgagtaagacaaggtctaatatcgccggcatagctcggcctcataatagaatattg
gagacacctttcaatccagctggtcttgggggccaactatttactccacatgttgatcct
atagtcaatttaacgcctaacgtagcgaatttgagtttaggagctcctggtaataccgcg
tttgctatgcctggaacgcttggacccttggtaacggcgcctgggtctccagtgagattg
atgggtgctggacccaacagcccctttgctatgatgccaatacagcacaatccgaacgta
gcgaatattggtgcgcttgctaggatggctccggctccgatgatggacaaaccgcgtttg
ccggatcctattcatttccctgagatgatgcacaacgttgcgaaggagatagaagatgaa
gccaacggatatttccagaggatatacaatcatcctccgcatcctacactgtctatagat
gaggtacttgatatgcttaagaagtttcaagattcgcccagtaaaagagaacgtgaagta
ttctcgtgcatgcttagaaatctgttcgaggaatataaatttttcccacagtaccctgac
aaagagttacacataacagcacagttatttggtgggattattgagaaaggattggtgccg
agttacgtatctctgggtcttgcattgcgtttcgtccttgatgcattacgcaaggcggaa
ggttcgaagatgtattacttcggcatagcagccctagacagatttaagtcgcgcctcaaa
gattaccacaaatattgtgagcacgtgcgggcgataccgcattttagtgaatttccacca
catttaatagaatatgtcgaatacggtctacagagccaggagccaccgaccaagccccag
ggtccagtgctcccggcaagcttggccgccatgttgaatcagactgctgtcgtcactgtc
acagccccatacagggcgatggtttgcgcgccagcggcgatctcagtaatgtcgaaagtg
gcggtttgccccggtggtagtctgggcagtagaccttctatagccaacgccaccaatatt
gacacactcctcacagctacagatcgggaagaaaagatcaactcacctccagaaccgatt
caagacaagacagcattcattttcaataacctcagtcaattaaatttacagacgaaatgt
gaagagctcaaggaaattattacagaagaatatttcccatggctttcccaatatctagtc
atgaagcgtgcctctatagagcttaacttccacgcattatattccaatttccttgacgtt
cttaaaatccgcgaaataaacaaaatggttacaaaagagacgtatcgtaacataagagtg
ttgctgcgctcagacaagggaatagctaatttctcggatcgatcgttgctcaagaatctt
ggtcactggcttggcatgctgactctagcgagaaatcagcccattcttcatgtggacctt
gatttgaaagctctactactggaagcttatcataaaggacagcaggaactgttatacgtc
gtgcctttcgtcgccaaagttttagaatcgtgcgccaaaagcgtcgtgttcaaacctccc
aatccatggaccatggctttgatgaatgttctagcagaacttcatcaagagcctgacttg
aaattgaacttgaagtttgaaattgaagtgctttgtaagaatcttagcttagacattgcc
aatttgaagccgtcaatctatttgaaagatccggagaaactgagactgattgaatttcaa
ctgtcgcagccaaaaccgaacaaggaagtggttgccgcaatgcctgtgaatcaatcgatg
gtgccacctccgcagatgacaatgatgcctccgccgatgattccgacggaagacatgacg
gtcccagcccctatgcctaccggtggcctcgtgcccaacgacccccacctcatgggcgtg
ttgggcctccccgagccgcgatttaactatctagacgtgaatgtgtcgtccacctctgct
ttcggacagaagatatctttcaatcctcacatcatactgttccagaactatccacacttg
aaacagtttgttaagcccgcgatcgaacgttcgatccaagaatggatacaccctgttgta
gacagatcgataaaatacgctttgacgacttgcgaacaaattataaggaaagacttcgca
cttgatcctgatgaagtgcgtatgcgaacgtgcgctcatcacatgatgagaaatctgacg
gcaggtatggcgatgatcacctgtcgagaacagatcatcagtaccatcagtgccaacctg
aaaactgcgtttatcactgctttgatgccttctactcaacaacagaaggaaataattgaa
agcgcggctgcagtactcgctacagaaaacatggaactggcctgcgcttttattcagaaa
acagctgtcgagaaggctttacccgaactcgataaacgtttaatgaacgattacgaaatg
agaaaaatcgcccgccaagaaggcaggcggtattacgacgccatggtagtgtcttaccag
accgagagaatacccgaacgtgttcgattgcgtgtcggtggacccgtcgacctgcagata
tctgtttacgacgaatttgcttgcaacattcccggcttcgtgcctgtaagagatgccggc
atattcatcccgaagccatctgcgcaggagcagatgccgcaactgactttcagtcaggtg
atcaacccggcacaactgtatggcacggacgagatgagcgcgctgatcacttcagcagag
atgttcttggctaactcgctgggcgtggcttcattgaccatgcaatctgccaatatgcac
gctctgcttgagtgcatgttcatagcacggaggaatcgcgatatagtttctggttgcaca
ttgttgcaaaaggcagtggaaggtattctggacggtcacattgttcagtccgctgtgagc
agcgaacatattgaaatgatgggccgctaccgtgacatccatctgcgcgtgttgaagctt
ctcgaagacgcgcgggtgtacggccacgtctggaccactaagcagatcacgtgctgcatc
accgagtgccgcgaggagctgcggtacaacatcgaggcagtggactgtctcatcaggaac
caccttgtcaatatgccccagtatgacatcgcaatggctcacatgatggacaatggtaat
aactatatggctgtagcttttgcgatgcagctggtccagttgtaccttgttgacgacaga
aacaacatgtatgtcaacgaatccgatttgtaccacaccacggagacactcgtgaggatt
gtgtccatgtctcgacagccgccgcccgagggtctcggctcgcttatcgagattctgagg
gttaatcaggatccaagcgcatatctaggcgaaagatcaccgttaggccctactgcgcac
atacactctggcattttgcaagttcggtcacaaaactacgacgacccaccaggccttcag
gagaagactgagaatctcctccgcgagtggaggaacgtcctgctcagcccgttgactgag
atcgaactagcacagaacttcaacttgtatgtgcacaggatgaacatgaatggcatactc
aagtcggatgacatgatcacacgcttcttcagaatcgccacgcaaatgtgcatcgagaat
gtttaccaacaactaaacgaagatcgtctcaacccaccgccggttcctcccaaaagggac
aaatactacaccatgtgcgactccttcattaaactggtgtcgttgcttatcaagaacacg
gcggatagcggcaaccctacgcccaagttgaatcttttgaataagattctgggaattatt
gctggctgcctgctgcaagaccatgaagagcatggtgtcaacttccaacagctcccatac
caccgtctgctgctcattctgtttctcgacatgaacatggctgagccagttcttgaatct
atgaactatcagattctcaccgcgttctgccatacactacgcattatccggcccggtgtt
gcccccggtttctgctacgcttggctcgaagtggtcgcacatcgagccttcgtcaacaga
gtacttgccgtcacgccacagcaaaagggctggggcatgtattcgacgctgctgatcgac
ttattcaagttcctcgacccgttcttgcgcaacactgagctcgcggcaccagtcatgatg
ctttacaagggcacacttaaagtgctgttggttttgcttcacgactttcctgaattcctg
tgtgactaccactacggcttctgtgacgagataccgcctaattgcatccaaatgaggaat
ctaattctctcggcgttcccaagaaacatgcgcctcccggaccctttcactcccaatctg
aaggtagatctattggctgagatcacgctgtcgccgcgcgcagtcgtcaactatgccacg
atgataccttcatcacagttcaagaaggacctcgacgcgtatctgaaagcgcgtgctcct
gtcactttcctttcagaattaaggagcaatatgcagataagcgacgatccggcggcgacc
gagcccggccgacgatacaacagccagctaatgaacgcggtagtgctgtacgtaggcaca
caggcgatcgcacacatacgcgccaaaggacagacgccgaacatgtccaccatcgcgcat
tcggcgcacatggacatcttccaaaacttcaccgttgacttcgactacgagggacgatac
ctgttcctgaacgcaatcgcgaatcagctgcggtacccgaatagtcacacgcactacttc
tcgtgctgcctgctgtacctgttcgcggaggccaactcggaggcggtgcaggagcagatc
acgcgcatgctgctcgaacggctcatcgtcaacagaccacatccgtgggggctgctcatt
acattcatcgagctcatcaagaatcccatctacaagttctggactcatgagttcgtgcat
tgcgctccagagattgagaaattgttcgcgtctgtcgcgcgctcgtgcatctcggacaag
gccggtggcggagggcttgaacgggagatagccgagtag
DBGET
integrated database retrieval system
