Magnolia sinica: 131222295
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Entry
131222295 CDS
T09699
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131222295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131222295
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
131222295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_16
TPR_17
TPR_14
TPR_8
TPR_19
TPR_12
TPR_CcmH_CycH
TPR_7
TPR_9
ARM_TT21_C
BTAD
TPR_15
NRIP1_repr_4
Motif
Other DBs
NCBI-GeneID:
131222295
NCBI-ProteinID:
XP_058073295
LinkDB
All DBs
Position
13:complement(274324..315128)
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AA seq
1182 aa
AA seq
DB search
MKNTDEEALLKKLQESLDSDPDKPSHHYNLGVFLWEKGEESKEYKERAVEHFIASAKLNP
SNGAAFRFLGHFYSRVSIDSQRASKCYQRAVTLNPDDFEAGEGLCGLLDEEGRDSLEVAV
CREALEKSPRAFWAFRRLGYMQVHQKKWSEAVPNLQHAIRGYPTCADLWEALGLAYQRLG
MFTAAIKSYGRAIELEDSRIFALVESGNILLMLGSYMKGVEQFRLALEIEPHNVAANYGL
ASGLLGLSKDCVNSGAFVWGASLLEEASDVAKASTCLAGNNSSSWKLHGDIQMAYSNCFP
WADEGQGLGIDEDSFKTSISSWKGKRLLAAVIANRSYQRALHLTPWQANIYTDIAISLDL
ICSLEERSYSDLEAWQLPEKMALGGLMLEANNNEFWLVLGCLSIDNAVKQHAFIRGLQLD
VSFAVAWAYLGQLYRKADQKLLARQAFDHARSIDPSLALPWAGMSIDTHAGICTPDEAYE
SCVRAVHILPLAEFQVGLGKLAVLTGHLLSPQVFGALQQAVQRAPHYPESHNLNGLACEA
RSDYQSAVAAYRKAQYAISAFARTAPKSHSSDVSVNLARSLCQAGNAHEAACECEDLKTA
GLLDSMGLQIYAVALWKLGKNDLALSMARNLASNVSTMNRASGAASLGLICKLLYCISGP
ESAAANILKMPQDLLQSTKISSIVSVLSSLDQSNQLQYVLPSDLHLLTSHEEGTGFHSLL
ALVKLVRHGSEHSLGIQSAVDYLKKVLHMYPDSILTRNHLSSLLLSSKEWKTSHAAIRCV
VTEPSGHPLLKGSKSAYEILGSAAVACYSNCTSKSKYSFPTCEGQCMHGVRPVQHQQKWL
HQEPWNDKSRYLLVLGVLQKAREERFPQHLCVTLKRLVFGALSSEVYSKKDQSCEYQKFQ
LLLCASEISMQAGDYVGCINHATDASRLSFPNGDPFFAHLQLCRAYVVQEDFSSLKDEYE
KCMQLKTDYQIGWISLKFIESRYKRQLQLNGVDVNFEACLEKNGSSWNMWMAIMDLVRGH
SFIQDQDFLLAEQALAHGCSIGGADCCLFLCHGAICMELARQRSGSQFLLLAVSSLTRAQ
ESSPVPLPIVSALLAQAEASLGARAKWERNLRFEWFSWPAEMRPAELYFQMHLLARQSKV
VPDQFSSVESSQSPQRWIIRAIHSNPSCSRYWKVLQKLGEQE
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacacggatgaggaagctctcctcaagaaattgcaagaatccctagattccgat
ccagataaaccttctcaccattacaatctcggtgtttttctgtgggaaaaaggggaagaa
tcgaaggaatacaaggaaagagcggtagagcatttcatcgcttctgcgaagctgaaccct
agcaatggagctgcatttcgattcctagggcatttctacagtcgagtatcaatcgattca
cagagagcttccaagtgctatcagagagctgtgactctcaatcctgatgattttgaagca
ggggaagggttgtgtggtttgctggatgaggaaggaagagatagtttggaggtggctgtt
tgcagagaagccttggagaagtcgccgagggccttttgggcattccggagattaggctac
atgcaggttcatcagaagaaatggtcagaagcagttccgaacctccaacatgcgatacgg
ggctatccaacatgtgcagatctatgggaagccttaggtcttgcgtaccagcggttgggc
atgtttactgcagctataaagtcgtacgggcgagctattgaactggaggattcaagaatc
tttgcattggttgagagtgggaacattctattgatgcttggttcatacatgaaaggagtt
gagcagtttcgtcttgctttggaaatagaacctcacaatgtagctgcaaactatgggctt
gcttctgggctgcttgggttgtccaaggattgtgtgaactctggtgcatttgtttgggga
gcttctctactggaggaagcatctgatgttgcaaaagctagtacctgcttggctggaaat
aattcttctagctggaagttgcatggggatattcagatggcgtattcaaactgttttcca
tgggcagatgaaggccaaggattgggtattgatgaggattctttcaaaacttccatcagt
tcctggaaagggaagcgtcttttggctgcagttattgctaatcgttcttaccagcgagct
ttgcacttgacaccgtggcaagctaatatttacactgacattgcgatctctctagatctc
atttgttctctagaggagagaagttattctgatttggaagcttggcagctacctgagaag
atggctctgggtggtttgatgcttgaggccaacaataatgagttctggctagttttgggt
tgtttgtcgattgacaatgcagtgaagcaacatgcttttatcaggggactacaattggat
gtatcattcgctgtagcatgggcataccttggacagctttacagaaaagcggatcaaaag
ctgctggccagacaagcatttgatcatgccagaagcatagatccttcattagcgttacca
tgggcaggcatgtcaattgatactcatgctgggatttgcacaccagatgaggcttatgag
agctgcgtacgggctgtgcatatattgcctctggcagaattccaagttggtctcggaaag
cttgctgttcttacgggtcaccttctatctccacaggtatttggagccttgcagcaggct
gttcagcgtgcacctcactatcccgagtcacataacttaaatggtctggcatgcgaggca
cgatcagattatcagtctgcagttgctgcatataggaaggcacaatatgccatcagtgct
tttgcaaggacagcaccaaagtcccatagtagtgatgtatcggttaatctggccagatca
ctttgtcaggcggggaatgctcatgaagctgcatgtgaatgtgaagatctgaagacggca
ggtttgcttgatagcatgggcctgcaaatatatgctgtggcattatggaaactcggcaag
aatgaccttgctctatccatggctagaaatttagcttccaatgtttcaaccatgaaccgg
gcatctggagccgcctctctggggttgatatgcaaattgctgtattgcatttccggccca
gaatctgcagcagctaatattctaaaaatgcctcaggatttattgcaaagcacaaaaatc
agttctattgtctctgtgcttagttctcttgaccaaagtaatcagcttcagtacgttctt
ccaagcgatcttcatcttcttacatctcatgaagagggtactggattccactctttacta
gcacttgttaaactggtcagacatgggtctgaacatagtctgggaatccagagtgcagtg
gattacctgaagaaagttcttcacatgtatcctgacagtattttaacaaggaatcatctc
agttctctcttgttatccagtaaagaatggaaaacttctcatgctgcaatcagatgtgtt
gtcacagagccttctggacaccctttgttgaaaggttcaaaatcagcgtatgagattctt
ggctctgcagcagttgcatgttattcgaactgcacctcaaaatcgaagtattcttttcca
acatgtgaaggccagtgcatgcacggagtacgaccagtacagcatcagcagaaatggttg
catcaagaaccatggaatgacaagtcacgatacttgcttgtactcggtgttttacaaaag
gctcgggaagaaagatttcctcaacatctttgtgttaccctcaagcgtttagtgtttggt
gctctatctagtgaagtctattcaaagaaagatcagtcttgtgaatatcaaaagtttcaa
cttctgctctgtgcttctgaaatcagtatgcaagctggagactacgttggttgcataaat
catgctaccgatgcatcgagactttcatttcctaatggggatccattctttgcacacttg
caactatgccgtgcatatgtggtgcaggaggatttttcaagcctgaaagatgagtatgaa
aaatgcatgcagctcaagacagattatcaaattggttggatatctcttaaatttattgaa
tctcgatacaagcgacagcttcagttgaatggcgtagatgtgaactttgaagcatgcttg
gaaaagaatgggagttcatggaatatgtggatggccattatggatttagtgcgaggtcac
agctttatacaggatcaggatttccttcttgctgaacaggctctagcccatggttgttca
attgggggagctgactgttgtctttttctctgtcatggtgctatctgtatggagcttgct
aggcagagatcgggttctcagtttctattgcttgcagttagcagcctcacaagagctcaa
gagtcctcgcctgttcctttacctatagtctcagcactgcttgctcaagcagaagccagc
ctaggcgctagagcaaagtgggagaggaaccttcgctttgaatggttttcttggccagca
gagatgaggcctgcagaattatattttcaaatgcatttgcttgcaaggcagtcgaaagtt
gtgcctgaccagttctccagtgtggaatcatctcaaagcccgcagagatggattattcga
gcgattcactcaaacccatcttgttcaaggtattggaaggttttgcaaaagctgggggaa
caagagtag
DBGET
integrated database retrieval system
