Magnolia sinica: 131232729
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Entry
131232729 CDS
T09699
Name
(RefSeq) uncharacterized protein LOC131232729 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131232729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131232729
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131232729
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131232729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DUF7605
Motif
Other DBs
NCBI-GeneID:
131232729
NCBI-ProteinID:
XP_058085159
LinkDB
All DBs
Position
18:11181236..11229075
Genome browser
AA seq
2465 aa
AA seq
DB search
MLPFSPTISNQIRFLLQSSNDSNSDSVYQELLQFVEYGSEGSILLLQACLDQLNLQGTDA
QSMQLKPDILSSVFRYLMDRPNFTTVFCEALKSTPVGDGFLGDLSKALHLSASEKIAVGL
ALSDSENLDVRMRGQNFCMVQIEELCANPAPIASNEQIQNIIVFLDRSEGLAKHVDSFIK
MLSLLQPKERTPMLLSPMLMHDLSEVDSLRHLDLFFESSEAENDFDAVLEEIEKEMSMAD
IMMELGYGCTVNASHCKGMLSLFSPLNEATLSRILGTIARTHSGLEDSQNTYSTFCSAVG
SSSAADSSCLNSWNVDVLVDSIKQLAPETNWARVMENMDHEGFYFPDEQSFSLFMSIYAN
ACQDPFPLHAIYGSVWKNAEGQLSFLRYAVAAPPEIFTFSHSARQLSYADALHGSKLPNG
NSNQAWACLDLLEVLCQLAERGHTTSVRTILEHPLKQCPDLLIMGMAHVNTVFNLLQSDV
SSAVFPMIVGNAMGSGIIHHIWNVNHNLVLRGFIDFHETDPDNINRILDVCQELKILQSV
LDTTPFTFSIKLAAVASRKEHINLEQWLNENLSTYKDTFFEDCLKFLKEIPSAATNDASA
NPFQHSSSVMNLYLETSSTLLKVLQAHSGQLISRQLSEEVRRLQASSVHANPRLQNGGAT
DSSTHDASYPDGIETEANLYFHRMFSGQLSIDNMVQMLARFKESSEKREQLIYECMIANL
FEEYKFFPKYPERQLKIAAVLFGSLIKHQLVTHLTLGIALRGVLDALRKSVDSKMFVFGA
KALEQFVDRLVEWPQYCNHILQISHLRGTHTELVAFIERALARISSGQSDVNGNNSAPPD
QYQGSTQATLEETMEASEASWQLMGSGITQAGQQLFSPLQLQQGHQGFLDDRHKASGTSV
SYMKPPLSSGGQPSLGSTNVDLISNQKSAVSQSLQVLSSQHPTSGSATVRYTPAFLRSSR
GITSQGMPRQHSYSTGFGAALNIETLIAAAGRRDTPIEEPASEIQDKILFMINNISASNT
DAKSKEFTDVLKEQYYPWFAQYMVMKRASIEPNFHELYLKFLEKVNSRLLNKEIVKATYE
NCKVLLRSELIKSSSEERSLLKNLGSWLGKFTIGRNQALRAREIDPKELIIEAYEKGLMI
AVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEIYALPNLKMNLKFDIEVLFKNLGVD
MKDVKPTSLLKDRVREIEGNPDFSNKDMGASQPQMVAESNSGIISALSQVDLQPELTNPS
HHSGHSTVLTQYAAPLHLASSALAEDDKTGTLGLSERLPSSQGLSQVAPSQSPFSGSQLP
TSIPNFGTQIVVNQKLNNLGLQMQFQRVLPVAMERAIREIIAPVVQRSVTIASRTTKEIV
LKDYAVESDESRIYSAAHLMVASLAGSLAHVTCKEPLRIAMSTHLRTSVQAISIPSDLLE
QAVQLVTNDNLDLACAMIEQAATEKALQTIDGEIVQSLAFRRKQREGVGAAYFEASTYTK
GPFASVPEALRPKPGRLSTTQQRVYEAFVRLPWQNQSSSNAVPSGPPGSSGNPVSSGMSR
VYGSTSGQLNSSIYSAAQVASGLGTVTQPLDLIPEEMDPASALLSASTAHVGVTDGVIQH
GAEITSAAPSFPSAVAVPELHSVESSSAAKESGAVLQSLSTTSATERLGSGTSEPLLSTG
EALDKYQILAQKLEALIIKDARDVEIQAIIAEVPEIILRCVSRDEAALAVAQKVFKSLYE
NSSNGIHIASHLAILATIRDVCKLVVKELTSWVIYSDEDRKFNKDITVGLIRSELLNLAE
YNVHLAKLIDGGRNKAATEFAISLLQTLVVQEPGVSVSEFYNVIDALAKLAMRPGSPESL
QQLVEIARNPTANAMSPTGFTIGKEDKARQSRDKKVASGRSLTSRDDYNTESATPDPAGF
RDQVSRLFAEWCRICELPGTTDVAYTHYISQLQQSGLLKGDDLTDRFFRILMEISVANCL
ATDMINPSSLSLQTPQQVQHISFAVIDMYAKLVVLVIKYCAVDQGASKAFLLPKILSVTV
RVIQKDAEEKKAAFSPRAYFRLFLNWLLDLGSPDPVLDSSNFQVLTAFANAFHALQPLKV
PSWSFAWLELVSHRSFMPKLLTINSQKGWPLVQRLLVDLFKFMEPYLRNAELGESVHFLY
KGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKI
DLLAEISQSPRILSEVDGALKAKQIKADIDEYLKTRQQGSPFLTELKQRLLLPQGEAALA
GTRYNVPLINSLVLYVGMQAIQQLQSKSTPQHVPAPPMTHTAPMDIFLVGAAMDIFQILI
GDLDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAEATQDIIQEQITRVLLERLIVN
RPHPWGLLITFIELIKNPRYNFWNRAFTHCAPEIEKLFESVSRSCGGPKAVDDGMVPGGI
TDNNH
NT seq
7398 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttctctcccaccatctcgaaccagattcggttcctgctccagagctcgaac
gattccaactccgattcggtctaccaagaactcctccagtttgttgaatatggaagtgag
ggaagtattttattgctccaagcctgcttggatcagttgaatttgcagggtactgatgcg
cagagcatgcagttgaaaccagacatactgtcatccgtctttaggtacttaatggacaga
ccgaatttcactacagtgttctgcgaagcactgaaaagcacaccagtgggtgacggattc
ctgggtgacctctcaaaagcacttcatttatcagcatctgagaaaattgcagttggtctt
gcactgtcagattcggaaaatctggatgttagaatgagaggtcaaaacttctgcatggtc
cagattgaggaattatgcgcaaatcctgctcctattgcttctaatgagcaaattcagaat
atcatcgtgtttcttgatcgctctgagggccttgccaagcatgtcgattcttttataaag
atgctgtccttattacagcccaaagagaggactcctatgttgctatctccgatgcttatg
catgatttatccgaagtcgactcattgaggcatttggatctcttctttgaatccagtgaa
gcggaaaatgattttgatgctgttctagaggagatagagaaggaaatgagcatggctgac
attatgatggaactaggatacggatgtacagttaatgcttcacattgcaaagggatgctg
tcgcttttttcacctctgaacgaagcgaccctttctaggatacttggcacgattgcacgc
acccattctggtcttgaggacagtcaaaacacgtattccacattctgctctgctgttggt
agcagttcagctgctgattcatcttgtttgaactcctggaatgttgatgttcttgtcgat
tcaattaagcaacttgctcctgaaactaattgggcacgtgttatggaaaacatggatcat
gaggggttctacttccctgatgaacaatcattttctcttttcatgtccatttatgcaaat
gcttgccaggacccatttccgctccatgcgatctacggttctgtctggaagaatgctgag
gggcagctatcttttttaagatatgctgtagctgcaccacctgaaatatttacattctcc
cattctgcgcggcagctgtcatatgctgatgccttgcacggtagtaagcttcctaatgga
aattcaaatcaagcatgggcctgtcttgatcttttagaggtgttatgtcaactagctgag
aggggtcataccacttctgttcgaacaatccttgagcaccctcttaaacagtgtcctgat
ctcttgattatggggatggctcatgtgaatactgtgtttaacctcctccaatctgatgtc
tcttccgcggtttttcccatgatagttggaaatgccatgggaagtggtataattcaccat
atttggaatgttaatcataatcttgtcttgcggggttttattgacttccacgagactgat
ccagacaatattaataggattttggatgtctgccaggagctgaagatcttacaatcagta
ttggacacgactccatttacattcagcatcaaactggctgcagttgcttctcgtaaggaa
cacataaatctggagcaatggctgaatgaaaatctgagcacatacaaggatacttttttt
gaggattgcctcaagttcttaaaagaaataccttctgcagcaacaaatgatgcatctgcc
aatcctttccaacattccagctctgtcatgaatctttatctagagacaagttctactctt
ttgaaggtccttcaagctcattctggccagctcatctcccgccaactttctgaggaagtg
agaaggttgcaggcatcatctgtgcatgctaatccaagactgcaaaatggtggagctaca
gattcatcaacacatgatgcatcatatccagatggcattgagacagaagcgaacttatat
ttccatcgaatgttttctggacaattatccattgataatatggttcaaatgcttgcccgt
tttaaggaatcatctgaaaaaagggagcaattgatctatgagtgcatgatagcgaatcta
ttcgaagagtacaagttcttccccaagtatccagaaaggcagcttaaaattgctgctgtt
ctctttggttccctcataaagcatcagcttgtaacacatcttacccttggtattgccctt
cgtggtgttctggatgcattgcgcaaatctgttgattcaaaaatgtttgtgtttggggcc
aaggctttggagcagtttgtggaccgtttggtggagtggccacagtactgtaatcatatt
ttacaaatatctcatttgcgtggcacccatactgagctggtcgcattcattgagcgagct
cttgctcgcatttcctcgggccaatctgatgtaaacggtaacaacagtgcccctcccgat
cagtaccaaggctctactcaagctaccttggaggaaactatggaggcatctgaagcctca
tggcagttgatgggctctgggatcacacaggctgggcagcaacttttctctccactgcag
ctgcaacaagggcatcaaggttttctggatgaccggcataaagcctctggaacttctgtt
agctacatgaaacctcctctatcttctggtggacaaccatcattaggctccacaaatgtt
gatttaatcagtaatcagaagtcagctgtttcacagtccttgcaagttttgtcttctcag
catcctaccagtggttcagctacagtgcggtacactcctgcctttctgcgctcatctcgt
ggaataacatctcaaggtatgcctaggcagcactcatacagcacaggttttggagctgct
ctgaatattgaaacactaattgctgctgctgggagaagggatactccaatagaggaacct
gcatcagagatacaggacaagattttatttatgattaataatatttcagcttcaaatacg
gatgcaaaatcaaaagaatttactgatgtcctgaaagagcagtactatccatggtttgct
cagtatatggtgatgaaaagagcaagcattgagccaaattttcatgagctgtacttgaag
ttcttggagaaagttaattcaagattgttgaataaggagattgtcaaagctacttatgag
aattgcaaggttcttctaagatcagagcttataaaatcaagttcagaagagcgttcatta
ctaaaaaatcttggtagctggcttgggaagttcacgattggcaggaatcaagcattaaga
gcccgggaaatagatccgaaagagttaataattgaggcatatgaaaaaggattgatgatt
gcagtaattccatttacctcgaagattctggagccatgccaaagtagtcttgcttatcag
cctcctaatccatggactatgggcatccttggtttgcttgctgagatctatgcactacca
aaccttaaaatgaacctgaagtttgacattgaggtcctatttaagaatcttggcgtcgat
atgaaagatgtaaaaccaacttcacttctcaaagatcgggttagagaaatagaaggaaat
cctgatttttccaacaaagacatgggtgcatcccagccacaaatggttgcagaatctaac
tctggaataatatctgctttgagtcaagttgatctgcagcctgagcttacgaatccatca
caccacagtggccattctactgtactaacccagtatgctgcccctcttcatcttgcttca
agtgcgctggcagaggatgacaagactggaactttaggcttatctgaacgtcttccttct
agtcagggactctcacaggttgctccatcccagtctccattttctggtagtcagctgcca
acatcaataccaaattttggtactcagattgttgtcaatcaaaagcttaataatttgggc
ttgcagatgcagtttcaaagagttcttccagtggccatggagagggccatcagagagata
atagctcctgttgttcagcggagtgttaccatagctagccggacaaccaaggagattgtt
ttaaaggactatgctgtggagtcggatgaaagccgcatatatagtgctgcacatttaatg
gtggcaagcctagcaggaagtctggctcatgtgacatgcaaggaaccccttcgcattgcc
atgtcaactcacttgcggacttcagttcaggctataagcattcctagtgatcttcttgaa
caagctgttcagcttgttacaaatgataatcttgatctggcttgtgctatgattgaacaa
gctgcaaccgagaaggcattgcaaactattgatggagaaatagttcagtcacttgctttt
aggaggaagcagagggaaggggttggtgctgcatattttgaggcaagtacttacacaaaa
ggcccttttgcttcggtaccagaggcacttcgccccaagcctggtcgcttgtccactacc
cagcaacgagtatatgaggcttttgtcaggttgccgtggcaaaatcagtcaagttcaaat
gctgtaccttctggtccacctggttcatctggaaatcctgtcagttctggcatgtctcgt
gtatatggttcaacttcaggacagctgaattcaagcatctactcagctgcacaagtggct
tcaggactcggtacagttacccagcctttggatctgattcccgaagagatggaccctgct
tcagcacttcttagtgcctccacagctcatgttggggtgactgatggtgttatccagcat
ggtgcagaaatcacttctgctgccccgtcatttccgtcagctgtggcagtccctgaattg
cactcggtggaatcctccagtgcagcgaaagaatcaggggctgttttacagtcattatcc
acaacatctgctacagagcgcctcggaagtggaacatcagaacctttgttatcaacagga
gaggcactggacaagtatcagatactggcacagaagctggaagctttgattattaaagat
gctagagatgtggaaattcaggcaatcattgctgaagtgcctgaaatcatactcagatgt
gtaagccgagacgaagctgcattggctgtggctcaaaaggtgtttaaaagtttatatgag
aactcatcaaatggtatccacattgcgtcccatctggcaattctggccactattcgggat
gtttgcaagcttgttgtcaaggaattgacgagttgggtgatttattcagatgaggaccgg
aagttcaacaaagatataactgttggccttattcgatccgaattactaaaccttgcagag
tacaatgtacatctagcaaaacttattgatgggggaaggaataaagctgccacggagttt
gccatttctcttttgcagacgctggtggttcaggaacctggagttagtgtctcggaattc
tacaatgtcattgatgcattggcaaagcttgctatgaggcctggatcgccagagtctttg
caacaattggttgagattgctaggaatcccactgccaatgcgatgtctccaactggtttt
actattggcaaggaagataaggcaaggcaatctagggacaaaaaggtcgcttctggtcgt
tccttgactagcagggatgactataatactgagtctgccacaccagatcctgctggtttt
cgtgatcaggtttctcgtctgtttgctgagtggtgtcggatttgtgaacttcctggcact
actgatgtagcttatacccattatatctcacagttacaacaaagtgggttgcttaaaggg
gatgatctcacggatcgctttttccgaatcctcatggaaatttctgtagcaaattgtttg
gccactgacatgattaatccaagctctttgtccctacaaacgccacaacaagtccagcat
atctcatttgctgttattgatatgtatgcaaagcttgtggttttagttataaagtattgt
gcggtggaccagggagcaagtaaagcgtttcttttgcccaagattttgtcagtgactgtg
agagttatccaaaaggatgcagaagagaagaaagctgctttcagcccaagggcatatttc
agattgtttctgaactggcttttggaccttggttcccctgaccctgtccttgatagttcc
aactttcaggtcttgacagcatttgcgaatgctttccatgcattacaacctttgaaagtt
cccagttggagctttgcatggctcgagttggtgagccacagaagtttcatgccaaaattg
ctaacaatcaactctcagaagggttggcctttggttcagcgcctacttgttgacttgttc
aaattcatggagccatacttgaggaatgctgaacttggggaatcggttcactttctgtac
aaaggcactctaagggtcctgttggtactgcttcatgatttcccggagttcctttgtgat
tatcatttcagcttctgtgatgtgattccacccagttgcattcaaatgcggaatgttatt
ctaagtgcattcccacgaaacatgaggctgcccgatccttctactcccaacttgaagatt
gatttgctggctgaaatcagccaatcaccacgcattctctctgaggttgatggtgctctg
aaagcaaagcagattaaggctgacattgatgagtatctcaagacaaggcaacaaggatct
ccgttcttaacagagctgaagcagagactactgcttcctcagggtgaggctgcactggct
gggactcgatacaatgtgcccctaataaactcccttgtgctttacgtaggaatgcaggct
atccagcaactacagagcaaatctacgcctcagcatgtacctgcaccaccaatgacccac
actgctcccatggatatatttttagttggtgctgccatggatatattccagatcttgatt
ggggacttggatacagaaggacgctatcttttcctcaacgcagttgccaaccagttgcgc
tatccaaacaaccatacccattacttctcctttgtccttctctacttgtttgcagaagca
acccaggacatcatccaggagcaaataacgagggtgttgttggagcgcctaattgtcaac
cgaccccatccctggggtcttctcatcactttcattgaactcatcaagaacccacgatat
aatttctggaatcgggcattcactcactgtgcgcctgagattgagaagctgttcgagtca
gtgtcaagatcatgtgggggcccaaaagctgtggatgatgggatggttccaggtgggatc
actgacaacaaccattaa
DBGET
integrated database retrieval system
