Magnolia sinica: 131248268
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Entry
131248268 CDS
T09699
Name
(RefSeq) uncharacterized protein LOC131248268 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131248268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131248268
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131248268
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131248268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DUF7605
Motif
Other DBs
NCBI-GeneID:
131248268
NCBI-ProteinID:
XP_058104445
LinkDB
All DBs
Position
6:11285505..11376233
Genome browser
AA seq
2389 aa
AA seq
DB search
MLPFSSTVSDQIRFLLQNSDDSNSDSVFRELCQFVEYGNEGSIVLLQACLDQVKFQSEDF
QSKLYLLSAIFRYFLGRPNFATVFCEALRSKVMSEGFLEGLSKQLHLSTPEKIAVGLALS
DSGNMDFRIRGQNFCRAHIEELCTKPASVSHEQIQNIFLFLSQSEGLSKHVDSFTKMLSL
LQLKERTHFVLAPILADDSSDVNSLRYLESFFDCTENDFDTVLAEIEKEISMADIMKELG
YGCTTNTSVCKEMLSLFSPLNEVTLSRILCTMAWTHIGLEDSQNTFSTFCSALGTNSTAD
SSWLSSWNVDVLVDSIKELAPEIDWRSVMENLDHEGFYFPDEKAFSLFMSIYAKACQDPF
PLHAICGSVWKNAEGQLSFLRHAVFAPPELFTFTHSTKQLSHVDAVHGSTLPPEHANNAW
FCLELLEVLCQLAESGYASSVRTMLEYPLKQCPDVLPIGMAQINTAFNLLQHEVCSIVFP
VIAGSAMKSGIVHHLWLINPKLVLRGFVEIHNTNPDTIEKILDICQELKILSSVLDMTPF
PFSIKLAVLASQKEHVNLEKWLHQNLSTYKDSFFEYCLNSLKEIPLDGDASASPFQHFGA
VLNVLQAHSGQLVSCQLSEEMERLLLASGHVNPRLQGGGVIDSLPSDGYPGDVEAETDSY
FHQIYSKQLTVDQMIKMIARFKDSPEKREQSIYHCMIANLFKEYLFFHSQPESQFEVTAV
LLGSLINHQLLHCHTLGVAIHCVLNALREPVDSKMFVFGAKALEQFLDRLVEWPKYCNEI
LQIPHLRGAQAELFSYIERVLTHISLGQLESNGGNGAPTDQHKGFSRAPSENLEALEPSG
IFNGSGTTKPGQQLSPCQLQQRRLGFVDGWDKASAAYVSHMELPLSFAGQPLFGSSNVDL
ISNQKPLQIVPSQHPPSRPATVIPSLGFLHHSQGITSVGLLRQNTHNMGFGAALNIETLL
AAAERRDTPLEVPAVEVQEKISFMVNNISSANIDSKAKEFIGILEEQHYPWFAQYMVMKR
ASIEPNFHDLYLEFIDKVNSRLLNKEIMNASYENCKVLLRSELIKSSSEERSLFRNLGSW
LGKFTIGRNQVLLAREIDLKALIIKAYEKGLMIAVIPFTSKILGQCQSSLAYQPPNSWTM
AILSLLAEIYALPNLKMNLKFDIEVLFRNLCVDMKDVKPSSLLKDRVREIEGNPDFSKKD
TGASQPPMVAEANSGMVSSLSQVEVQAEHTNPSHSCGHYNGLSQSTPSRSPLFATQHLTP
IPNIGIHVVVNQKLGALGRQLQFQRIVAAAVEKAILEITSPVVEQSVKVASQTTKELVLK
DYAIESDESRIYAAARALVANLAGCLAHAQCKECLPQILSNQLRNSLQSLNIMSDSLKQT
VQLITNDNLCLGCTVVERAATEKAVQCIDGYMSPSLDFRRKQREGVGSAFYNAITYMKGP
FASIPEALRPKPGCLSTIQHQVYEYFVQQPWQNQSSPSSNAAHSGLTSSYCGSLSSGLTC
VYGASSGQQISSIYSAEPVIPGFSAVAQPLDLIPEEMDPLSAQPFSASALIGMADGVIQH
GAEMNSPAPSFPSMATAPELQPVESSIAVKDSGTVVLPLPIVLVSQHLGSGLSDPLLTTG
DALDKFQLVARKLEALITKGARDVEIQGVIAEVPGVILKCVSRDEAAMTLARKVFRSLYE
NASNSVHVTSHVAILVAIRNICKLIVKELTSWVIYSDEERKFNKDITVRLIRSELLNLAE
YNVHLAKLIDGGRNKAATDFSVSLVQTLVVQEPQISVSKLYSLMDTLEKLASRPGSAESL
QQLVEIAKNSSSTVVSLPGSDIGNEDMIRQSRDKKVGSGHSLASREDHDVTKSVAVDPAG
FLDQVSHLFAEWCRICELPGMNDASYAHYISQLQQSGLLKGDDITDRFFCILTELSVTRC
LFSEVTNLYVLSLQSPQQAHDLSFIAIDMYSKLVVLVLKYCAVDQGSIKVILLAKILSVI
VRVIQKDALENKSSFNPRLYFRLFVNWLSDFGSPDTVLDGANFQVLTAFADAFHALQPLK
VPGWRFAWLELVSHRSFMPQLLMSNSHKGWPFIHRLLIDLFKFMEPYVRNDELGETVRFL
YKGTLRVLLLLLHDFPEFLCGYYFSFCDVIPPSCIQMRNIILCAFPHNMELPYPLTPNLK
VDLVPESSQSPCILSEVDGAIKAMQIKTKIDEYLKSWKKGSPLLAELNQSLLLPQSEAAL
AGTRYNVPLINSLVLYLGMQAIYTTPVDDFSVSPTMDIFQVMITDLDPEGRYLFLNSVAN
QLRYPSSHTFYFSLVLLYLFSEASQDVIQEQIMRVLLERLIVKQPHPWGLLATFIKLVKN
PQNDFWNQPFIRHERKIVDELFELLARPYGSMMTMDGGMVPGGVSDNAH
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttttcgtccaccgtttcagaccagattcgcttcttgctccagaactcggac
gattccaactccgactcggtcttccgcgagctctgtcagtttgttgaatatgggaatgag
ggaagcattgtactgctccaagcctgcttagatcaagtgaaatttcagagcgaagacttt
cagtcaaagctatatcttctatcagctatctttagatactttttgggtagaccaaatttc
gccacagttttctgtgaagcactgagaagtaaagtgatgagtgaaggatttctagaaggt
ctctccaagcaattgcatttgtctacacccgagaaaattgctgttggtcttgctctgtca
gattcaggaaatatggatttcagaatcagagggcaaaatttctgcagggcacatattgag
gaattatgtacaaagcctgcttctgtttctcatgagcaaattcagaacatttttttattt
ctctctcagtccgagggcctttcaaagcatgtggattcttttacaaagatgttgtccttg
ttacaactcaaagagaggactcattttgtactagccccaatactggcagatgattcatct
gatgtcaactcattgaggtatttggaatcattctttgattgcactgagaatgattttgat
actgttctagctgagatcgagaaggaaattagcatggcagatataatgaaggaactgggc
tatggatgtacaactaatacttcagtctgtaaagagatgctctctctcttttcacccctt
aatgaagttactctctctaggatactctgcacaatggcatggacccatattggtcttgag
gacagtcaaaacacattttcaacattctgctctgctcttggtactaattcgactgctgat
tcatcatggttgagctcttggaatgttgatgtcctcgtagactcgattaaagaacttgct
cctgaaattgattggagaagtgtcatggaaaacttggatcacgaggggttctactttcct
gatgaaaaggcattttctcttttcatgtctatttatgcaaaagcgtgccaggacccattc
cccctccatgccatttgcgggtctgtttggaagaatgctgagggccagctatctttccta
agacatgctgtttttgcaccgccagaactgtttacattcacacattctactaagcagctg
tcgcatgttgatgcggtgcatgggagtacgcttccacctgagcatgcaaataatgcttgg
ttctgccttgaacttttagaggtgttatgtcaattagccgaaagtggctatgccagctct
gtccgcacaatgcttgagtaccctttgaagcagtgtcctgatgtcttacctattgggatg
gcccaaattaatactgcatttaatctcttacaacatgaagtgtgttccattgtttttccc
gtgatagctggaagtgccatgaaaagtgggatagttcatcatctttggttaattaatcct
aaacttgtcttgcgaggttttgttgaaattcacaacactaatccagacaccattgagaag
atattggacatttgccaagagctgaagatcctatcatctgtgttggacatgactccattt
cctttcagcattaaacttgctgtgcttgcttctcagaaggaacatgtaaatcttgagaaa
tggttgcatcaaaatctgagcacatataaagattctttctttgagtattgtctcaattcc
ttaaaagaaatacctttagatggggatgcttctgctagtcctttccaacattttggtgct
gttttgaatgtccttcaagcccattctgggcagctagtctcctgccaactttctgaggaa
atggaaaggttgctgttagcatctgggcatgttaatccaagacttcagggtggtggagtt
atagattcattaccatctgatggctatcctggcgatgttgaggcagaaaccgactcttac
ttccaccaaatatattctaagcagttaactgttgatcaaatgattaaaatgattgcccgt
ttcaaggattctcctgaaaaaagggaacaatcaatctatcattgtatgatagcaaatcta
tttaaagagtacctcttcttccatagtcagccagaaagtcaatttgaagtcactgctgtt
ctccttggatcccttataaatcatcaacttctgcactgtcatacccttggtgttgccatc
cactgcgttctgaatgcattgcgtgaacctgtggactcgaaaatgtttgtatttggggcc
aaggctttggagcagtttttagaccgtttggtggagtggccaaaatattgcaatgagatt
ttgcaaatacctcatttgcgtggtgcccaggctgagctcttttcatatattgagcgcgtt
cttacacacatttccttaggccagttggaatcaaatggtggcaatggtgctccaactgat
caacacaaaggttttagtcgggctccctcagaaaacctggaggcattggaaccttcaggg
atattcaatggttctggcaccacaaaacctggacagcaactttctccatgccaattgcaa
cagaggcgtctaggttttgtggatggctgggataaagcttctgcagcttatgttagccac
atggagctccctttatcttttgctggacaacctttgttcggttcctcaaatgttgactta
atcagtaatcagaagcccttgcaaattgtgccttctcagcatcctccaagcaggccagct
actgtgataccctctcttgggtttttgcatcattctcaaggaataacatctgtaggattg
cttagacaaaatacacataacatgggttttggagctgctttgaacattgaaactctactt
gcagctgctgagagaagggatactcccttggaggtgcctgctgtagaagttcaggaaaag
atatcatttatggttaacaatatctcatctgcaaatatagattctaaagcaaaagaattt
atagggatcctcgaagagcagcactatccgtggtttgctcagtatatggtgatgaaaagg
gcgagcattgagccaaatttccatgacctctatttggaattcatagacaaggttaattcg
agactattgaataaagagatcatgaatgcgagttacgagaattgcaaggttcttttaaga
tccgaactaataaaatcaagttcggaagagcgttccttatttagaaatcttgggagctgg
cttggaaaattcacaatcggcaggaatcaagttttacttgcccgagaaatagatttaaaa
gcattaataataaaggcatatgaaaagggattgatgattgcagtaattccatttacctca
aagattctaggacaatgccagtccagtctagcttatcagccccctaattcttggactatg
gcaatccttagtttacttgctgagatctatgcacttccaaaccttaaaatgaacctgaaa
ttcgacattgaggttctgtttaggaatctttgtgtggatatgaaagatgtaaaaccatct
tcccttctcaaagatcgtgttcgggaaatagaaggcaatcctgatttttctaagaaagat
actggtgcatcccagccaccaatggttgcggaagctaactctggaatggtatcttcattg
agtcaagttgaggtgcaggccgagcataccaatccatctcactcctgtggccattacaat
ggactgtcccaatctactccatcgcggtcaccattatttgctactcagcatctgacacca
atccctaatattggaattcatgttgttgtcaatcaaaagcttggtgctttgggcaggcag
ttgcagtttcagagaatcgtggcagcagctgtggagaaggccatcctagagataacatct
cctgttgttgaacagagtgttaaagttgctagccagacaactaaggaacttgttttaaag
gactatgctatcgagtcagatgaaagtcgcatatatgcggctgcacgtgcattggtggca
aatctagcaggatgtttagctcatgcgcaatgcaaggaatgtcttcctcaaatcttgtca
aatcagcttcgcaattctcttcaatccttgaatattatgagtgattctctcaaacagacc
gtacagctcattacgaatgataatctttgtctgggatgtacagtggttgaacgtgctgca
actgagaaggcagtgcaatgcattgatggctatatgtctccatctctagattttagacga
aagcagagggagggagttggttctgcattttataatgcaattacttacatgaaaggccct
tttgccagcataccagaggcacttcgccccaagcctggctgcttgtccactatccaacat
caagtttatgagtattttgtccagcaaccatggcaaaatcagtcaagccccagttctaat
gctgcgcattctggtctaaccagttcatattgtggttctcttagttcaggcttgacttgt
gtttatggtgcaagttcaggacagcaaatctcaagcatatattcggctgaaccagtgatt
cctgggttcagtgccgttgcccaaccattggatctgattcctgaagagatggaccccctt
tcggcacaaccttttagtgcctcggctctcatcgggatggctgatggtgttatccagcat
ggtgcagaaatgaactctcctgcaccttcatttccctcaatggctacagccccagaactg
cagccggtggaatcctctattgcagtgaaggactctggaactgttgtactgccgttgccg
attgttttagtttcacagcaccttggaagtggcttatcagatcctttgttgacaacagga
gatgcattggataagttccagttagtagcacggaagctggaagctttgatcactaaaggc
gctagagatgtagaaattcagggagttattgctgaagtgcctggagtcattcttaaatgt
gtaagcagagatgaagctgccatgacattggcccggaaggtctttaggagcttgtatgag
aatgcatcaaacagcgtacatgttacttcccatgttgcaattctggtagctattcgcaac
atttgcaagcttattgtcaaggaactaacgagttgggtaatttactcagatgaagagagg
aagttcaacaaagatataacagtccgccttattcgttccgagttactaaaccttgcagag
tacaacgtgcacctagccaaacttattgacggtggcaggaacaaagcggctacagatttt
tctgtttctcttgtccaaacattggtggttcaggagcctcaaataagtgtctcaaaactc
tacagtctcatggatactttggaaaagcttgcttcaagacctggatctgcagaatccttg
caacaattggttgagattgccaagaattccagctccactgtggtatctcttcctggttct
gatattggcaacgaagatatgatcagacagtccagggacaagaaggttggttctggtcat
tccttggcaagtagagaggaccatgatgttaccaaatctgtggctgtggatcctgctggt
ttcctagatcaggtttctcatctcttcgctgaatggtgtcggatttgtgaacttcctggt
atgaatgatgcatcttatgcccattatatttcacaattgcagcaaagtgggctacttaaa
ggtgatgatatcacagatcgctttttctgcatccttacggaactttctgtgacacgttgt
ctattctctgaagtgactaatctctatgtgttgtcactacaatcacctcaacaagcccat
gatctctcgtttattgccattgatatgtattcaaagcttgtggttttagttctcaagtac
tgtgcagtggatcagggatctattaaagtcattcttctagccaagattctgtctgtgatt
gtgagagttatccaaaaagatgctttagagaataagtcctctttcaacccaaggctgtat
ttcaggctgtttgtaaactggctttcggattttggttcccctgacactgtccttgatggt
gccaactttcaggtcttgacggcatttgccgatgctttccatgcattgcagcctctgaaa
gttcctggctggagatttgcatggcttgagttggtgagccacagaagtttcatgccacaa
ttactcatgtccaactctcacaagggttggcctttcatccatcgcttgctcatagacttg
ttcaaattcatggagccatacgtgaggaatgatgaactaggagaaacggttcgctttcta
tacaaaggaactctaagggtcctgctgttactgcttcatgattttccagagttcctttgt
ggttattatttcagcttctgcgatgtgatccctcccagttgcattcaaatgcgaaacatt
attctctgtgcttttccccacaatatggagctgccctatcctttaactcccaacttaaag
gttgatttggtccctgaatccagccagtcaccatgcatcctctctgaggttgatggtgcc
atcaaagcaatgcaaattaagactaaaattgatgagtatctcaagtcatggaaaaaggga
tctccacttttagcggagctaaaccagagtctgctgcttccccaaagcgaggcggcactg
gctgggactcggtacaatgtacccctgatcaactccctcgtgctttacttaggcatgcag
gctatctacaccactcccgtggatgacttttcagtcagtcctaccatggacattttccag
gttatgataacagatttggatccagaagggcgctaccttttcctaaattcagttgccaac
caattacgttacccaagcagccataccttctacttctccttggtccttctctatttgttt
tcagaagcaagccaggatgtcattcaggagcaaataatgagggtgttgttagagcgtctc
attgtcaagcaacctcatccatggggcttgctggccacctttattaagctcgttaagaat
ccacagaatgacttctggaaccagccattcattcggcatgagcgtaagattgttgatgaa
ctgtttgaattactggcaagaccctatggcagcatgatgactatggatggtgggatggtc
ccaggtggggtttctgataatgctcattga
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integrated database retrieval system
