Mycoplasmopsis synoviae ATCC 25204: VY93_02645
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Entry
VY93_02645 CDS
T04518
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mso
Mycoplasmopsis synoviae ATCC 25204
Pathway
mso03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mso00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VY93_02645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mso03021
]
VY93_02645
03400 DNA repair and recombination proteins [BR:
mso03400
]
VY93_02645
Enzymes [BR:
mso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VY93_02645
Transcription machinery [BR:
mso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VY93_02645
DNA repair and recombination proteins [BR:
mso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VY93_02645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
AKB11217
LinkDB
All DBs
Position
complement(603554..607162)
Genome browser
AA seq
1202 aa
AA seq
DB search
MQKDKKNYKLRKFGPITERRDYSITKHSLPVGDILATSKKSYQDFINKKIEELLNEIYPI
EASNKEASLEYEKKSVKFELPFKKAEHENLQIKTCKAKKTNFSMKVYITLKKVVSQTGVV
KKEKILLGEIPYITSSGSFIINGSEKVIVSQLIRSPGAYFGVSVRNKQSEDLFNKLEILP
RIGSWIEVSHKVTSANLDAIKIKIDKNKNINIVTFLASFGLLADDIRYLFGKNEVLEETI
RKNKTIDITEFSRQEIMDLCQEKIFRIIRKGDRISEESKRSLLSGMLFDKKRYNLSKTGR
YMLNNKLSLVERITNTYLAQKVVSHLGNTFDVGTYVTYEIAKEIQESFEAKAKDNKSNLH
LEKIPNINPDDVYYKINKDNKSLNKRINIARIKIWPTKRAMDANVTPSEVIGNDPKATEE
HLLLSDIIAAISYYLNLTVGIGQDDDPDSLMNKRIVSVGELLEGELRIALLKLEKATRER
MGAKEPDKITAKNVTNNKLITNQMKTFFNTSKLAQFMDQINPLAEISNKRRVTSLGPGGL
NRDTAQFEVRDVHSTHYGRICPIETPEGPNIGLILNYAIYSTVNELGFLQTPYYKVNDGV
VDYNDVRYLTSYEEIGYAFAQSSVHVNDKNEIIDEQITIKKDYNYIIGSPKDIDFLEVSS
KQIVSVAAAAIPFLENNDANRALMGSNMQRQAVPLIEAEAPLVATGIEADIAKFSSYNIV
ANNDGEVIYVDGTKIQVRTAKKIDTYNLKNFEKSNQGTIIQQKPIVKVGDHVKEGDLLVD
GSSFKDGEMALGKNLLVGFTTWNGYNFEDAIIINERLVKDDVLTSIYIEEQTIQFRISKS
SEDIMTRDIPNVSKYSMRNLDEFGIIKVGSEVVAGDVLVGRISPKGEENPSQEEKLLNAI
FNQRPQNYKDTSLKVKNGHNGTVIHVEVLSRENGDILEDGLDSIIKVYIAQKRKIKVGDK
MAGRHGNKGVISIILPEEDMPHLEDGTPLDIMLNPQGVPSRMNIGQVLEMHLGMAAKKLG
TKFVTPSFDGIKKETIEDLLQEANLDKSGKQVVIDPITGEKFDNPISVGVIYMLKLNHMV
DDKMHARSVGPYSLITQQPLGGKSQNGGQRFGEMETWALESYGASNILQEILTYKSDDIY
SRNLVYKALVNDSAIPNPGMPESFNVLSNELKGLLMKLGITETESNSDELIQHFDHLGVE
HE
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaagacaaaaaaaattataagcttcgtaaatttggcccaatcacagaaagacgt
gattattcaattaccaagcactctctaccagttggagatattttagctacaagcaaaaaa
agttaccaagattttatcaacaaaaaaattgaagaacttttaaatgaaatttatccaatt
gaagcttcaaataaagaagctagccttgaatacgagaaaaaaagtgttaaattcgagctt
ccattcaaaaaagcagaacacgaaaatcttcaaattaaaacctgtaaagctaaaaaaaca
aactttagcatgaaagtttatataacacttaaaaaagttgtttcacaaactggagttgtt
aaaaaagaaaaaattcttttaggagaaattccatacattacttcttctggaagttttatc
attaacggtagtgaaaaagttatagtaagtcagttgattcgttctcctggtgcatacttt
ggagtttctgttagaaacaaacaatcagaagacttatttaacaaacttgaaattcttcca
agaattggatcatgaattgaagtttcacataaagttacctctgctaatttagatgctatt
aagattaaaatcgataaaaataaaaatattaatatcgttacctttctagcatcttttggt
cttttagccgacgatattcgttacctttttggtaaaaacgaagttctagaagaaaccatt
agaaaaaataaaacaatcgatatcaccgaattttctagacaagaaatcatggatctttgt
caggaaaaaatctttagaatcatccgtaaaggagatagaatctcagaagagtctaaaaga
tcacttctttcaggaatgctttttgataaaaaacgttacaacctatcaaaaaccggtcgt
tacatgctaaataacaaactttctcttgtggaaagaattaccaatacttatttagctcaa
aaagtagtatcgcatttaggaaatacctttgacgtaggaacctacgttacttatgaaatt
gctaaggaaattcaagaatcattcgaagctaaagctaaagataataaaagcaatcttcat
ttagaaaaaattccaaatatcaaccctgatgatgtttactacaaaattaataaagacaat
aaatcactaaataaaagaattaatattgccagaattaaaatctgaccaactaagcgtgca
atggacgcaaacgtgactccttctgaagttataggaaacgatcctaaagctactgaagag
catctattgctatcagatatcatcgctgcaattagctactatttaaatctaaccgtagga
attggtcaagatgatgatccagattcacttatgaataagagaatcgtatcagtaggagag
cttcttgaaggtgaattaagaattgctttattaaaattagaaaaagcaactcgtgaaaga
atgggtgctaaagagccagataaaattaccgcgaaaaatgttacaaataataagcttata
actaaccaaatgaagacatttttcaacacttcaaaactagctcaattcatggatcaaatt
aatcctttagctgaaatttcaaataaacgtagagttacatccctagggcctggtggacta
aatcgtgacactgcacaatttgaagttcgtgacgtgcattcaactcactatggaagaatt
tgtccaattgaaactcctgaaggacccaacataggtctgattttaaactacgccatttat
tcaaccgtaaatgagcttggatttttacaaactccatactataaagttaacgatggagta
gtagattacaatgacgttagatatctaacatcatacgaagaaatcggttatgcttttgct
caatcttcagttcatgttaatgataaaaatgaaatcattgatgaacaaattaccattaaa
aaagactataactatatcattggttcaccaaaagatattgactttttagaggtttcttct
aaacaaatagtatccgttgctgctgctgcaattccatttttagaaaacaacgatgctaac
cgtgcacttatgggatcaaacatgcaacgtcaagcagttcctttaattgaagcagaagct
ccgctagtagccaccggtatagaagctgatattgctaaatttagttcatataacatcgta
gctaataacgatggtgaagtaatttacgtggatggaactaaaattcaagttagaaccgct
aaaaaaatcgatacatataatcttaaaaactttgaaaaatctaaccaaggaacaattatt
caacaaaaacctattgttaaagtaggagaccacgttaaagaaggtgatttattagttgat
ggatcttcatttaaagatggagaaatggcgctagggaaaaaccttctagttggatttaca
acatgaaatggatataacttcgaggatgcgattattattaacgagcgtcttgttaaagat
gatgttttaacatcgatttatatcgaagagcaaaccattcaatttagaatttcaaaatca
agtgaagatatcatgactcgtgatattccaaacgtttcaaaatactcaatgagaaacctt
gatgaatttggaattattaaagtcggatcagaagtagtagctggcgatgtattagtagga
agaatttctcctaagggagaagaaaatccatctcaagaagaaaaacttcttaatgcaatt
ttcaaccaaagaccacaaaactataaagacacttctttaaaagttaaaaacggacacaac
ggaactgtaattcacgttgaggttttaagccgtgaaaatggtgatattttagaagacgga
cttgattcaattattaaagtatatatcgcccaaaaaagaaaaattaaagtcggtgataaa
atggcaggtcgtcacggaaacaaaggggttatttcaattattcttccagaagaagatatg
cctcacttagaagatggaacaccgcttgatattatgctaaatcctcaaggtgttccttct
cgtatgaacatcggtcaagttttagaaatgcaccttggaatggctgctaaaaaattaggc
acaaaattcgtaactccttcttttgatggtattaaaaaagaaaccatagaagatctgctt
caagaagcaaatcttgataaatcaggaaaacaagtagtaattgatcctattactggtgaa
aaatttgacaatccaatttctgttggagttatttacatgcttaaacttaaccacatggtt
gatgataaaatgcatgctcgtagcgttgggccatattcacttattactcaacaacctctt
ggaggaaagagtcaaaatggtggacaaagatttggggaaatggaaacatgagcgcttgaa
tcttatggagcttcaaatatcttgcaagaaattcttacctataaatcagatgatatttat
tcaagaaatttagtttataaagcgctagttaatgatagtgctattcctaaccctggaatg
cctgagtcatttaacgttttaagcaacgagcttaaaggtcttcttatgaagctaggaatt
accgaaactgaaagcaatagcgacgaattaattcaacactttgatcatttaggagtagaa
catgagtaa
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