KEGG   Methanosarcina siciliae T4/M: MSSIT_3345
Entry
MSSIT_3345        CDS       T03865                                 
Name
(GenBank) Flap structure-specific endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
msw  Methanosarcina siciliae T4/M
Pathway
msw03030  DNA replication
msw03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:msw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSSIT_3345
   03410 Base excision repair
    MSSIT_3345
   03450 Non-homologous end-joining
    MSSIT_3345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msw03032]
    MSSIT_3345
   03400 DNA repair and recombination proteins [BR:msw03400]
    MSSIT_3345
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:msw04147]
    MSSIT_3345
DNA replication proteins [BR:msw03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSSIT_3345
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSSIT_3345
DNA repair and recombination proteins [BR:msw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSSIT_3345
Exosome [BR:msw04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   MSSIT_3345
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: AKB30064
UniProt: A0A0E3P7Y0
LinkDB
Position
4205024..4206040
AA seq 338 aa
MGTDIGDLLQKRKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSRGKVTSHLSG
LLYRTASLIEAGIKPVFIFDGKPPDLKSETLSRRKEVRETSREKWANAKAEGDLEAAYKY
AQASSKVDHEIVEDSKYLLGIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFG
APKVVRNMAVTGKRKLPGKNVYVDVKLEVIDLEETLRALGVNRNQLIDIAICVGTDYNKG
LEKVGPKTALKLIKKHGDIHAVLREKEVEIEGLDRIRELFIHPEVTDNYEIKWTKPDSEK
LIKFLSEKNDFSAERVEKAAERLKAVSGARQKTLDQWF
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgggcacggatataggagatctgcttcagaaaaggaaaatagagctttctgacctttca
aaccgagtggttgcagttgatgcatttaacacccttcaccagtttttgagcattatccgc
cagagggacggaagtcctctggttaattcaagagggaaagtgacctctcacctttccggg
ctgctctacaggacagcaagcctgattgaagccggcatcaaacctgttttcatttttgac
ggcaagccccctgacctgaaatccgaaaccctgagccggaggaaagaagtaagggagact
tctcgggaaaaatgggcaaatgcaaaggcagaaggggaccttgaagctgcttataagtat
gctcaggcatcttcaaaggtcgaccatgaaatcgttgaagattcaaaatacctcctcgga
ataatgggcattccctggatacaggctccctgtgaaggagaggcacaggctgcccacatg
gttctgaagaaagacgcagactatgttgcttcacaggactatgattcctttcttttcgga
gcccccaaagttgtccgcaatatggctgtcaccggaaagcgtaagctccccggaaagaat
gtctatgttgatgtcaaacttgaagtaatcgaccttgaggaaaccctcagggctctgggg
gtcaacaggaatcagttaatcgatattgcaatctgcgtcggtacggactataacaaagga
ctggaaaaagtaggccctaaaaccgccctcaaactgataaaaaagcatggagatatccat
gccgtgctccgggaaaaagaagtagaaatcgaaggcctggacagaataagggaacttttt
atccatcctgaagtaaccgacaactacgaaattaaatggacaaagccggattccgaaaaa
ctcatcaaattcctatcagagaagaacgacttctccgcagagagggtggaaaaagctgca
gaacgccttaaagcagtgtcaggagcaaggcagaaaaccctcgaccagtggttttga

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