Malus sylvestris (European crab apple): 126586667
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Entry
126586667 CDS
T09027
Name
(RefSeq) protein CHROMATIN REMODELING 35
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126586667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126586667
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
126586667
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
126586667
NCBI-ProteinID:
XP_050107549
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Position
10:complement(8839310..8848549)
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AA seq
899 aa
AA seq
DB search
MESPIDVSPIKTTYDSLYSKGHKRMKLCLDGKNYDGLDISVSKHDEVVEKKPKSTSEVVD
YTDPFAIRNLLERLDCGEYGSVTKEIEAVLAKKTQTMVPYFAKYPALANAFLEEDKRQSK
KAPKSENPLASDKVIDLEDDCVENNAPASRRPVVIIDSDEEQSEDPRSYPFKEVVLPQPS
YSFQEVFLGQSSEQNSMNNAVERDFLENRLPGEKPSLSSETGIKNHPGIYVGVEDDGDYQ
TDVEEDDGLGDIWNEMSMGLETNKDAAVEGMSGGEEEGDCDHSFVLKDDIGYVCRICGVI
DRAIETIFEFQYNKVKRSTRTYMPDSRNGKERDSAEIDGFKLSEDGLILTEISAHPRHMK
QMKPHQVEGFNFLVSNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPNARPLIVLP
KGILDTWKKEFKIWQVEDIPLIDFYENKADNRSQQLEVLKQWVEHKSILFLGYKQFSSIV
CDRETSKVSTACQEILLKAPSILILDEGHTPRNDNTDVFQSLAKLQTPRKVVLSGTIFQN
HVNEVFNLLNLVRPKFLRAETSRPIIKRIMSRVHIPGVRKQFKAGSESAFYELVEHTLQK
DNDFRRKVTVIHELREMTSKVLHYYKGDTLDELPGLVDFTVVLNLTPKQKHETEKLKKFA
RKFKQNAVGSAVYLHPKLSNLAWKPTDPDDRVDELLDKIDVKDGVKARFFLNILNLCESA
GEKLLVFSQYLLPLKFLERLVVRMKGWSAGREMFVISGESSSEQREWSMDRFNNSPTAKV
FFGSIKACGEGISLVGASRLILLDVHLNPSVSRQAIGRAFRPGQKKKVFVYRLVAANSPE
EEDHSTCFQKETIAKMWFEWNEYCGFRDFEVETIDVNESDDPFLESPVLREDVKLLYRR
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggagtcaccaattgatgtatcccccattaaaactacatatgacagtttatattccaag
gggcataagaggatgaaactctgtttggacggaaagaattatgatggcttggacatctct
gtaagtaagcatgatgaagttgtagagaagaaacctaagtctacttcagaagttgttgac
tacactgatccatttgccatacggaacttgctggagaggttagactgtggtgaatatgga
agtgttacaaaggagatagaggcagttcttgctaaaaagacccaaactatggtcccttat
tttgcaaagtatcctgcactggcaaatgcattcttggaggaagacaaaaggcagagtaaa
aaggctcccaaatctgaaaatccattagctagtgataaagtcattgatttggaggatgac
tgcgttgaaaataatgctccagcatcacggaggcctgtggtaatcattgattcagatgag
gaacaaagtgaagatccaagatcttatcctttcaaagaggttgtcttgccacaaccatca
tattctttccaggaggttttcttgggacaatcgtcagaacagaattccatgaataacgca
gtggaaagagactttttggagaacagacttccaggtgaaaaaccaagtctgtccagtgaa
acaggaatcaagaatcacccaggaatttatgttggtgtagaagatgatggtgattaccag
acagatgttgaagaagatgatggtctgggagatatttggaatgaaatgtcaatgggttta
gaaactaacaaggatgctgctgtagaaggaatgagtggcggggaagaggaaggtgactgt
gatcattcttttgtcttgaaggatgatattggatatgtttgccgcatttgtggggttatt
gacagagcaattgagacgatatttgagtttcagtataacaaggtcaaaaggagtacaaga
acttacatgcctgattctcggaatggcaaagaaagagattcagccgagatagatggattt
aaattgtcagaggatggtttgatactaactgagatatctgctcacccaagacatatgaaa
caaatgaaacctcatcaagtggagggtttcaattttcttgttagcaacttggttggcgat
aatcctggtggttgcatcttggcccatgctccaggttctggtaaaacatttatgataata
agtttcatgcaaagttttctagctaagtatccaaatgcaagacccctgattgttcttcct
aaaggaatcctggatacgtggaaaaaggagtttaaaatttggcaagtggaggatattcca
ttaattgatttctatgaaaataaagcagacaatcgatcacagcagctggaggtgttgaaa
caatgggtggagcacaagagtatccttttcttagggtacaagcaattctcctctattgtt
tgtgatcgagaaactagcaaggtatcaactgcgtgccaagaaatattgctgaaggcacct
tcaattcttattctggatgaagggcatactccaagaaatgataacactgacgtgttccaa
tcccttgcaaagctgcagacacctaggaaagttgtactttctggaaccattttccaaaat
catgtcaacgaagtattcaaccttttgaatcttgttcgtcctaagtttttaagagcagaa
acatcccggcccatcatcaagcggatcatgagtagagtgcatataccaggtgtaaggaag
cagttcaaagctggcagtgaatcagccttctatgaactagtcgagcatactctacagaag
gataatgattttcgaaggaaagtcactgtcatacacgaattgcgtgagatgactagcaag
gtgcttcattattacaaaggagataccctcgatgaacttcctgggctagttgatttcact
gtggtactaaatctcacccccaagcagaagcacgagactgagaaattaaagaagtttgca
agaaagttcaagcaaaatgctgttggaagtgctgtttatcttcacccaaaactgtccaac
ttggcttggaagcctactgatccagatgacagagtggatgagctcttggacaaaatagat
gtgaaagatggagtcaaggcaagattctttcttaatatactgaacttatgtgagtcagcg
ggtgagaaacttttagttttcagtcagtacctcctaccactgaaatttttggagagatta
gtagtcagaatgaaggggtggagcgctgggagagaaatgtttgtgatctcaggtgagtca
agctctgagcaacgggaatggtctatggatagatttaacaattcccccaccgcaaaggtt
ttcttcggctcaattaaggcttgtggggagggtatatcgttggtaggggcttctcgacta
atacttctggatgtacatcttaacccctcagtgagcaggcaggccatcggtcgtgcattt
agaccaggtcagaagaagaaagttttcgtgtatagattggtagctgctaattctcctgaa
gaggaagatcatagcacttgcttccaaaaagaaacaattgcaaaaatgtggtttgaatgg
aatgaatattgtggtttccgggattttgaagtggagaccattgatgtgaatgagagtgat
gatcccttcctcgaaagtccagtgttgagggaggatgtgaagcttctgtacagaaggtag
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