Malus sylvestris (European crab apple): 126589747
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Entry
126589747 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126589747 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126589747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126589747
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126589747
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126589747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
126589747
NCBI-ProteinID:
XP_050111090
LinkDB
All DBs
Position
2:complement(22875493..22901072)
Genome browser
AA seq
2399 aa
AA seq
DB search
MLKFTPATASQIRFLLQSLNDANSDSILRELSQFIEYGIEGSILLLQTCLDHLTNYRTEL
KNAALERVFASIFKSLLDRPNFSTVFCQSLRNTEISEGILENVSNALHLSVSEKTGIALA
LSDSENLDTRICGKNFCMAQIQKLCENANVMNSSEQIHNIVMFLHRSEGLSKHVDSFMQM
LSLLQLKDDSFSVLTPLLSDELRDANFLSNVDLLHENGENNFDAILSEMEKEISMGDIMK
ELGYGCTVDSSQCSEILSLFLPLTEITISKILGMIASTHVGLEDNQNTFSTFWLALGNST
LSDLPMLNTWNIDVLVDTIMQLAPGTNWIQVIENLDHEGFYIPNQEAFSFFMSVYQHVCQ
DPFPLHVICRSVWKNTEGQLSFLKHAISAPPEVFTFAHSVRQLAYIDAVHGHKLQLGHAN
HAWLSLDLLDVLCLLAERGHALPVRSMLEHPLKHCPEVLLLGMAHTNTLYNLLQYEVSYT
VFPMMVKNATGSGIINHLWHINTSLVLRGFMDSHNCDPDSIARILDICQELKILSSVLEM
IPSSFSIRLAALASRKELVDLEKWLSNNLNAHKDIFFEECIKFLKEIQFSGSQDFSTRPF
QHSGAVSNIFVDTATIFLKVLKAHVGLIASSQLTEELERLSVTIMDSNPRLQNCDPTEST
DGYADDIEAEANSYFHQMFSGQLTIDSMVQMLARFKESSIKREQSIFECMIANLFEEYRF
FPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQF
VDRLIEWPQYCNHILQISHLQSTHSELVAFIEQALARISLGHLDSDGSNHASAAHHHGPS
QATPGNVELNGSTILHTGQQLSSPLQLQQRHESSLDDHHKASNSSNDIKPPLSSAVQPPV
GPVDDPPSIQKSQSALGAPAMLSSASPGFVRPSRGVTSTRFGSALNIETLVAAAEKRDTP
IEAPASEIQDKISFIINNISVANVEAKSKEFAEIMKEQYHPWFAQYMVMKRASIEPNFHD
LYLKFLDKVNSKCLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEI
YSMPNLKMNLKFDIEVLFKNLGVDLKEISPSSLLKDRNRELEGNPDFSNKDIGSSQPQMV
ADVKSGMLSPLNQVELPVEVAPSNSGSHTHLLSQYAPPVHISTGTLIEDEKLLPDQIPAQ
GLLQATPSQSPFSVPTPISNIATHVVINPKLSALGLHLHFQRVVPIAMDRAIKEIVSGIV
QRSVSIATQTTKELVLKDYAMESDETRILYAAHLMVASLAGSLAHVTCKEPLRTSISTQL
RNSLQGSNIPNDHLEHAVQLVTNDNLDLGCAIIEQAATDKALQTIDGEIAQQLSLRRKRE
GAGTTFFDANMYTQSGSVPESLRPKPGHLSISQQRVYEDFVRLPWQNQSSQNSHVLPAST
AAPSASAGLNSIFGSASVQLNTGYSAGPGSKFDVVSRPLDEAVEPNPALHSSASSICVGA
GDGVSQHSSENDSVIGSFLSAASAPELQSVESSDAIKESGISSQPLPSSTATELLACNIS
EPSLNTRDALDKYQIVSQKLEALVTNDAKESEIQGVIGEVPEIILRCVSRDEAALAVAQK
VFKGLYENASNHTHVSAHIAMLTAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIHS
ELLNLAEYNVQMAKLIDGGRNKPATEFSISLLQSLVIEESKVISELQNLVDTLAKLAAKP
GFPESLQQLVEMVKYPASTVGAPSAINVGKEDKGRISKDKKASVHSPVSREDFSNVESVE
PDPPGFREQVSMLFAEWYRICELPGANDAAYTHFILQLHQNGLLKGDDMTDRFFRVLTEL
SVAHCLSSEMTIPGTLQTPQQVPNFSFLAIDIYAKLVFLILKGSNKLFLLSKILAVIVRF
IQKDAEEKKGSFNPRPYFRLIVNWLLDLGSLDPVIDGANFQILTAFANAFHALQPLKVPT
FSFAWLELVSHRSFMPKMLAGNGQKGWPYIQRLLVHLFQFMEPFLRNAELGVPVHFLYKG
TLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDL
LAEISQSPRILSEVDAALKAKQMKADVDEYLKTRQQGSSFLTELKQKLLLLPSEAASAGT
RYNVPLINSLVLYVGMQAIQQLQARTPQAQSTQTVPLAVYLVGAALDIFQTLMVDLDTEG
RYLFLNAIANQLRYPNTHTHYFSFIVLYLFADSNQHEIIQEQITRVLLERLIVNRPHPWG
LLITFIELIKNPRYQFWNRAFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWVSESAH
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtttacgccggccaccgccagccagattcgcttcctcctccagagcctcaac
gacgccaactccgactccattcttcgagagctctctcagtttattgaatatggaattgag
ggaagcattttgctgttacagacctgtctggatcatctcactaattacagaacagagtta
aagaatgcagcattggagcgggtttttgcctcaattttcaaatctctccttgatagacct
aatttcagtacggtgttttgtcagtccctaagaaatacagagattagcgaaggaattctt
gagaatgtctctaatgcattacacctgtctgtatctgagaaaactggcattgctcttgcg
ttgtcagattctgaaaacctagacaccaggatatgtggcaagaacttctgtatggctcag
atccagaagttgtgtgaaaatgctaatgttatgaattcatctgagcaaattcataacatt
gttatgttcctccaccggtctgagggcctttccaagcatgtggattcctttatgcagatg
ttatctttactgcagctgaaagatgacagtttttctgttttaactccattgctttcagat
gagctccgtgatgccaattttttgagcaatgtggatttgttgcatgaaaacggagaaaat
aattttgatgctattttatctgaaatggagaaggaaatcagcatgggagatataatgaag
gaattaggttatggatgcacagttgattcatctcagtgcagcgagattttatctcttttc
ttacctctcactgagattactatttcaaaaatccttggtatgattgcctctactcatgtt
ggtcttgaggacaatcagaatacattttcaacgttctggttggcgcttggtaacagcact
ttatccgatctgcctatgttgaacacctggaatattgatgtccttgtagatacaatcatg
caacttgctcccggcactaactggatacaagttattgaaaatttggatcatgagggattc
tacattcctaatcaggaggctttctcttttttcatgtccgtgtatcagcatgtgtgtcag
gatccattccccctccatgttatctgcaggtctgtttggaagaataccgagggtcagtta
tccttccttaaacatgctatatcagcaccacctgaagtgtttacctttgcccactctgtt
aggcaactggcctatattgatgcagtgcatggccataagcttcaacttggacatgcaaat
catgcatggttgagtcttgaccttttggatgtactgtgtctactagctgagaggggtcat
gctcttcctgttcgatcaatgcttgagcatcctcttaaacactgtcctgaagtcctgctt
cttgggatggcccatacaaatactctgtataacctgctgcaatatgaagtgtcttatacc
gttttccccatgatggtaaaaaatgcaacgggcagtggcataattaaccacctctggcat
attaacacctcactggtgctgcggggatttatggattctcacaattgtgatccagatagc
atagctagaatattggatatctgtcaagagctaaagattctatcatctgtcctagagatg
atcccttcctcttttagtatcagactggcagcccttgcttccagaaaagagcttgtagac
cttgagaagtggttgagtaataatttgaatgcgcataaggatattttctttgaggagtgc
ataaagttcttgaaggagattcaattcagtgggtcacaggatttctccaccagacctttc
caacattctggtgccgtgtctaatatttttgtggacactgctactatattcttgaaggtt
cttaaagctcatgttggcttgattgcctctagccaacttactgaggagttggaaaggttg
tctgtaacaattatggattctaatccaaggctgcagaattgtgaccctacggagtcaact
gatggatatgcagatgatattgaagctgaagcaaactcttacttccatcaaatgttttct
ggtcagttgacaattgattcaatggtccaaatgcttgcccgattcaaggaatcttctata
aaaagggaacagtcaatttttgagtgcatgattgcaaatctgtttgaagaatatagattt
ttccccaagtatcctgaaagacagctcaaaattgctgcagttctgtttggctctgtcatc
aaacaccagcttgtaactcatctgactcttgggatcgctctgcgtggtgttttagatgca
ttgcgcaaacctgcggattcaaaaatgtttgtgtttggaactaaggccttggagcagttt
gtggatcgtctgattgagtggcctcagtattgcaatcatattcttcaaatatcccatctg
cagagtactcattcagagcttgtggctttcattgaacaggctcttgccaggatttcatta
ggccatttagattcagatggaagtaaccatgcttccgctgctcatcaccatggtcccagt
caagctaccccaggaaatgtagagttaaatggctctaccatcttacataccgggcaacaa
ctttcttcaccactccagcttcaacagagacatgaaagttctcttgatgaccatcataaa
gcctcaaattcatcaaatgacataaagccacctttatcttctgcagtgcaacctccggtt
ggtcctgttgacgatcctcctagtattcagaagtcacaaagtgcactcggtgctccagca
atgttgtcttctgcttcccctggttttgttcgtccttctcgaggagttacttctaccagg
tttggctctgctttgaatattgaaacattagttgctgctgccgagaaaagagatactccc
attgaggctccagcatcagagattcaggacaagatatcatttataattaataatatttca
gttgccaatgttgaagctaagtcaaaggagtttgctgaaataatgaaagagcagtaccat
ccttggtttgcgcagtatatggttatgaaaagggcaagcattgagccgaattttcatgat
ttgtacctgaaatttctggacaaagttaattctaagtgtttgaataaggagattgttcaa
gccacttacgagaactgcaaggttcttcttggatctgagcttataaaatcaagctcagaa
gagcgttcattgttaaaaaatttaggcagctggcttgggaaacttacaattggaaggaat
caagtcttaagggctcgggaaatagatcccaaatctttgattatagaggcatatgaaaag
gggttgatgattgcagttataccctttacttcaaagattctggagccatgccaaagtagc
ttggcatatcagccaccaaatccttggacaatgggtattcttggattacttgctgagata
tattcaatgccaaacttgaaaatgaacctgaagtttgatattgaggttctattcaagaat
cttggtgtggatttgaaggagatatccccaagttctcttctcaaggaccggaacagagaa
cttgaagggaatcctgatttctctaacaaagatattggatcatcccaaccacagatggtt
gctgatgtgaaatccggaatgttatctccgctaaatcaggttgaactacccgttgaggtt
gctccatctaattctggaagccatacacatctactatctcagtatgcgccccctgttcat
atttcaactggcaccttaattgaggatgaaaagctgttgcctgatcagattcctgctcaa
ggactgttacaagctactccatcccagtcaccattctctgttcccacaccaatatctaat
attgcaactcacgtggttatcaacccgaaactcagtgctttgggattgcacttgcatttt
cagagggtggttccgattgcaatggacagagctatcaaagagatagtatctggtatcgtt
cagcgcagtgtttctatagctactcagacaactaaagaacttgtcttaaaggattatgcc
atggaatctgatgagacaagaatattatatgcagctcacttgatggttgcaagtttggca
ggaagtctagctcatgtaacttgcaaggaacccttgcgtacttctatatcaactcagctg
cgaaattcccttcagggatcaaacattccaaatgatcatctggaacatgctgtacaactt
gttactaatgacaatctggatcttggctgtgcaatcattgaacaggctgctactgataag
gcattacaaacaattgatggagaaatagctcaacaactgtcattaagaaggaagagggaa
ggtgcgggtacaacattttttgatgctaacatgtatacacaaagtggcagtgtgcctgag
tcccttcgccctaaacctggtcatttgtccatttctcaacaacgagtttatgaggacttc
gtgcggcttccctggcaaaaccagtctagccagaattcacatgttcttcctgctagtact
gcagctccatctgcaagtgctggtctaaatagcatatttggttcagcctcggttcaactt
aacacaggctactcagcaggtcctggaagcaagtttgatgttgtttctcgtccactggat
gaggcagttgaacccaatccagctctgcattcaagtgcatcatctatttgtgttggagcg
ggtgatggtgtttcccagcatagttctgagaatgattctgtcattggttcatttctttct
gctgcttctgccccagagctgcagtcagtagagtcgtctgatgctataaaggaatctgga
atttcttcacagccgctaccttcatctactgcaactgaacttctggcatgcaacatctca
gaaccttctcttaatacgagggatgcattggataaataccagattgtttcacaaaagctt
gaagctttggtgaccaacgatgctaaagagtcagaaattcagggagtaattggtgaagtt
cctgagattatactcagatgtgttagtcgagatgaggctgccttggctgtggctcaaaag
gttttcaagggtttatacgagaatgcatcgaaccatactcacgtcagtgctcatattgca
atgctgacagctattcgtgatgtttgcaaacttgttgttaaggagctcactagttgggtt
atttattctgatgaagagcggaagtttaacaaagatattactgttggccttattcacagt
gaattactaaatcttgcagagtacaatgttcaaatggcaaaactcattgatgggggcaga
aataagcctgcaactgaattttcaatttcccttctccaatctttggtgattgaagaatct
aaagttatatcagaacttcaaaatcttgttgacacattggcaaagctcgctgcaaagcct
ggatttcctgagtcgctacagcagctggttgaaatggtaaagtatcctgcttctactgtg
ggtgctccgtctgctattaatgtaggaaaagaggacaagggaagaatatctaaggataaa
aaggcttctgttcactctccggtgagcagggaagactttagtaatgtggagtctgtcgaa
ccagatcctcctggattccgtgagcaggtgtcaatgctgtttgcagagtggtaccggatt
tgtgaacttcctggtgcaaatgatgcagcttatacccattttatcttgcagctacatcaa
aatggtctgctgaaaggggatgatatgacagaccggtttttccgtgtcctcacagagcta
tctgttgcacattgcctgtcttctgagatgacaattcccgggacactgcaaacacctcaa
caagtgccgaatttctccttccttgctattgatatctatgctaaacttgttttcttaatt
ttgaagggatcaaataaactatttctcttgtccaagattttagcagtcatagtgagattc
attcaaaaggatgcagaggagaaaaaaggatctttcaacccaagaccgtattttagattg
attgttaactggcttctagaccttggttctttggatcctgtgattgatggtgctaacttt
cagatattgacagcatttgcaaatgcatttcatgctttgcagccccttaaggttcctaca
ttcagctttgcatggcttgagttggtgagtcataggagtttcatgccaaaaatgcttgct
ggaaatggccagaagggttggccctatatccaacgtttgctggtacatttgtttcaattc
atggagccatttttgaggaatgctgaacttggagtcccggtgcatttcctgtataaaggc
acacttagggtgctgctagtgctactccatgactttccagagttcctttgtgattatcat
tttacgttctgtgatgtaattcctccaagctgcattcaaatgcgaaatatcatcctcagt
gcatttccccgtaatatgaggctaccagatccatctactcccaacttaaagattgatttg
ctcgctgaaatcagtcagtctccacgtattctctctgaggttgatgcagctctaaaagcg
aagcagatgaaagctgatgtggatgagtacctcaagacaaggcaacagggttcttcattt
ctgactgaactgaagcaaaagttgctccttttaccaagtgaagctgcctcagctggtacc
cgttacaatgtacccctgatcaactcccttgtgctttatgttgggatgcaggctatccag
cagcttcaggctagaacgcctcaagcgcaatctacccaaactgttccattggctgtctat
ttggtgggtgctgctttggatatttttcagactttgatggtggacctagatactgaaggg
cgctaccttttcctaaatgcgattgcaaaccaactgcgttatccaaacacccatacccat
tacttttccttcattgttctgtacttgtttgccgattcaaaccagcatgaaattatccag
gagcaaatcacaagggtattgttggaacgtctgattgttaaccgacctcatccatggggt
cttctgattaccttcattgagcttatcaagaatccgagataccagttctggaaccgagca
ttcatcagatgtgcaccggagattgaaaaacttttcgaatctgtctcaaggtcttgtggc
ggtccaaaacctgtggacgaaagtatggtctcaggttgggtatcggagagtgcccactaa
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integrated database retrieval system
