Malus sylvestris (European crab apple): 126624186
Help
Entry
126624186 CDS
T09027
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl00040
Pentose and glucuronate interconversions
msyl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
126624186
Enzymes [BR:
msyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
126624186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
126624186
NCBI-ProteinID:
XP_050149182
LinkDB
All DBs
Position
5:30417614..30423010
Genome browser
AA seq
451 aa
AA seq
DB search
MRAYSKATMAVSLNLFSLLSTMAVLLALLASTNASAESGKNVNSRFVGPKESISSKNSSI
AERFEEALNEHAVDNPDEIASMVDMSIRNSTERRNLGFFSCATGNPIDDCWRCDPHWQLR
RKRLANCGIGFGRNAVGGRDGKYYVVNNPGNDDPVNPRAGTLRHAVIQDRPLWIVFKRDM
VITLKQELIMNSFKTIDARGVNVHIAYGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSS
PNHYGWRTMADGDAISIFGSSHIWIDHNSFSKCADGLVDAIMGSTALTISNNYFTHHNEV
MLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAE
PTINSQGNRYLAPNNGFAKEVTHRVNPNDWKHWNWRSEGDLLLNGAYFIASGTGSGASYA
RASSLGAKSSSMVGSITASAGVLNCRRGFQC
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgagagcttactctaaagcaacaatggcggtctctttgaacttgttttcgttactttcg
acaatggcggttcttctagctctgcttgcaagcacaaatgcctctgcagagagtggcaag
aatgttaattcaaggtttgtgggaccaaaggagtcaatcagctccaagaactcatcaata
gcagaaaggtttgaagaagctttgaatgagcacgcagtagataatccagatgaaattgcc
tctatggttgacatgagcattcgtaatagcacagagagaagaaatttgggattcttttcg
tgtgcgacggggaatccaattgatgattgttggaggtgtgacccacattggcagctccgc
cgcaagcgcttagccaactgcggcatagggttcgggcgcaacgccgtgggcggacgcgac
gggaaatactacgtggtgaacaaccccggcaacgacgatcccgtcaaccctagagccgga
acactccgccacgctgtcattcaggataggccgttgtggattgtgttcaagcgtgacatg
gtgatcacactaaagcaagagctaattatgaacagcttcaagacaattgatgcacgtgga
gtcaatgtgcacatagcatatggggcatgcattacgattcaatatgttactaacgtcatc
atccatgggctgcatatccatgactgcaaacccaccggaaatgccatggtccggagctcg
ccgaaccattacgggtggagaacgatggcggacggggacgcgatttccatttttggatcc
agccacatttggatcgaccataattctttttccaaatgtgctgatgggcttgttgatgct
atcatgggctctactgcacttaccatttccaacaactacttcacccaccataatgaggtt
atgctactgggccacagtgactcctatgtaagggacaagcttatgcaagtgacaattgcc
tacaatcattttggtgagggacttattcagaggatgccaaggtgtaggcacgggtatttc
catgtggtgaacaatgactacacacattgggagatgtatgccattggtggaagtgctgaa
cccacaattaacagccagggcaacagatatctggcccctaacaatggttttgctaaggag
gtgacacatagagttaacccaaatgactggaagcactggaactggagatcagaaggagac
ctgctcctaaatggagcctatttcattgcatcaggaactggttccggagcaagctatgcc
agggcctctagcttgggggccaagtcatcttccatggttggctccatcacagccagcgcc
ggcgtcctcaactgccggaggggtttccaatgttaa
DBGET
integrated database retrieval system
