Malus sylvestris (European crab apple): 126625765
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Entry
126625765 CDS
T09027
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126625765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126625765
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
126625765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
WDR55
EIF3I
WD40_Gbeta
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Cytochrom_D1
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_WDR41
Ge1_WD40
Beta-prop_NOL10_N
Beta-prop_IFT122_1st
Mito_carr
WD_LRWD1
Tricorn_N
Motif
Other DBs
NCBI-GeneID:
126625765
NCBI-ProteinID:
XP_050150783
LinkDB
All DBs
Position
6:complement(32286127..32290876)
Genome browser
AA seq
436 aa
AA seq
DB search
MEKSSLEQILQDAKLHRQLNSLIVAHLRDSNLYQAASAVASTTMTSLNVEAPRNRLLDLV
AKGLAVEKDEMSRGISSSAYDLGTSVASGYGGLPAPRTVAVDFGAVQETKGLSKSFPKHE
TRHLSEHKNIARCARFSPDGKFVATGSSDTSIKLFEVSKIKQMMLPEARDGPVRSIIRTF
YDHLQPINDLDFHPQNTVLISGSKDQTIKFFDFSKMTAKRAFRVIQDTHNVRSVSFHPSG
DFVLAGTDHPIPHLYDINTFQCYLSANAPEINDNGAINQVRYTATGGMYVTASKDGVLRL
WDGVTAKCVRSIPAHVTAEATSANFTKDQRFVLSSGKDSTVKLWDVGTGKLVKQYLGATH
TKLRCQAAFNDTEEFVLSIDEPANEIVIWDAMTADKVAKWPSNHIGAFRWLAHSPTEAAF
VTCGTDRSIRFWKENM
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggagaagagcagcttggagcaaattctgcaagatgccaagctccacaggcagctcaat
tccctcatcgtcgctcatcttcgcgacagcaatctttatcaggcagcaagtgccgttgct
tccacaacaatgacatcattgaatgtcgaagccccgcgtaataggcttcttgacctggtt
gccaagggacttgcagtggagaaagatgagatgtcgagagggatttcttcatctgcatat
gatttgggcacatcagtagcttctggatatggtggactcccagcacctcgcactgttgct
gttgattttggtgctgtgcaggaaacaaaaggcttgtcgaagagttttccaaagcatgag
acacgccatctttcagagcacaagaatattgccagatgtgcaaggtttagtcctgacggg
aagtttgttgctactggaagttctgacacgtcaataaagctttttgaggtttcaaaaatt
aagcaaatgatgcttccagaggctagagatggtcctgtgagatccatcatacgcacattc
tatgatcacttacaacctataaatgacttggatttccatcctcagaacactgttcttata
tctgggtcaaaagatcagaccataaagttctttgatttttccaagatgacagcaaagaga
gcattccgagttatccaggatacacacaacgtgcgttcagtgtcttttcatccttctgga
gattttgttttagctgggactgatcatccaattccacacttgtatgatatcaataccttc
cagtgttacctatcagcaaatgccccagaaatcaatgataatggagcaataaatcaggtc
aggtatacagctacaggtggcatgtatgttacagcttctaaagacggtgttcttcgttta
tgggatggtgtaactgccaagtgtgtacgctccataccagcacatgtgacggcagaggca
accagtgcaaactttactaaggatcaaaggtttgttctctcttctggaaaggattctacc
gtgaagctttgggacgttggcactgggaaactggttaagcaatatctaggagctacacat
actaaattgcggtgtcaggctgcttttaatgatactgaagaatttgtactgtccatcgat
gaaccagccaatgagattgttatctgggatgctatgacagcggacaaagtagcgaagtgg
ccttccaatcatattggtgctttccgttggcttgcacactcaccaacggaggccgcattt
gttacctgtgggactgacagatcaatccggttctggaaggaaaatatgtaa
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