Malassezia sympodialis: MSY001_1019
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Entry
MSY001_1019 CDS
T06541
Name
(RefSeq) uncharacterized protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
msym
Malassezia sympodialis
Pathway
msym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSY001_1019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msym03019
]
MSY001_1019
Messenger RNA biogenesis [BR:
msym03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MSY001_1019
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
MSY001_1019
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
FANCI_S2
Motif
Other DBs
NCBI-GeneID:
30055904
NCBI-ProteinID:
XP_018739628
UniProt:
M5EL08
LinkDB
All DBs
Position
Unknown
AA seq
1912 aa
AA seq
DB search
MLHGLQDTPIALPPEASGLGLFDAVLDHIAQAPATLTPGHIAPLLVSLLADDNKITHPPL
DSMQRQALVAALYERYGDAVSTALEQQIPKLAGRRGAAEVLMDWGSVPLTPKLARAVLVH
CGWSSNPTITDVAQLVCVLLQESTPSPQPSTNMQVVADVLNQMVPSLDWKAVIQSLDVPT
TLAVPPSKGLGVALGALIRGASQPVQALSGLWGVWSHRLRQLQLLYALLLLNEDAYSVAP
VPVRRILTMADVAEAPSSIQAQAQAACASPWNSIELIETLMELAGSAPGAEDSNEVGRAV
TAILERAIQTHAECVLLGLAALPSSTNAVHPELVTKLLAMFLAGHPSQQLVFWRLWQTQP
ELLLSTFQRIYAEAPLQLARIVEVAQELQIVNKLLEQRPLAFALDVAALAARRDLLQLEP
WLQQRIADAPPEAHMIATVLDFLEHKTKEDLMRRDPQAEPAFVPLNVQQVATFLRVLRGF
GDAMSSEEIEHFKIVRNLCLQLHPRLMSLTPGSVGVEPGLSVASFSKDVHREADSWYRQM
YEEKVSVDDIISLLRRCKHSDDDHEHQLFACMVHTLFDEHRWFELYYPPRELLMTAVVFG
SLIQYQLIDSIPLGIAIRYVVDALRSAPDSTMFHFGVQALMRFQKRLAEWPQLCQLLLSL
PTLQQTHPELVAAVNQALAAAKSGQPLPANDEVFTSVRVGKVAAEGQILPDEALSDQILF
LINNLSPVNLEEKLPLARSMIREDLLHWLARYLVAERVSTEPNNHELYLQFLERLELPRA
FVFVLHETMAKLKGLLEAEKTTQSSQDRTVLKNLASWLGLTTLAQDRPIKHRYMALKELL
LQGHEVGRLIVAIPFVCKVLEHCSRSTVFHPPNPWLMGVLRLLGELYQFADLKLNLKFEI
EVLCKSLHVDLSQLEPSALLPGRRPDPLPAQPSAEYAHVVVGMDQLAVQDSMTYQDMFVT
MLQNMAQYIVISPQIVPYANSAAWKRVMYVALERAIQEIITPVVERSVTIASISTRELVS
KDFAMEPDEQKMRTAAHQMAQNMAGSLALVTCKEPLRLSILAHARSLFAAGGVTEQALPE
QALLLLVQDNLDLACVVIEKTAMEKALAKVDEGLATAYATRREYKAHGRGAMFWDGTALS
HYSTTLPDMLRIAPPGLQPSQLRVYDNLAMTPMAPRTEEELEYDDGPATAPMGGVSLVPA
RALERFLLMAAELERFFSEVGETQSLATLPSNHFVRQISPHLTELVLHSVQRDETVLLIA
QKTVQLLYKAQTHLAREVWVAVLEHLCEQSPRVAKEVTAWLVYAEDERKFHVPVTLALVR
ANLIGIAEQDQQLAKLLIRSQFRASVVDFSAQLVRECLQEGLATRAQFATLLNALHRAAQ
FGRATPAAQQLLDELDQLAPGDAALALREQLAYSFASWVRVFQQAPHPEKAFIEYVTQLQ
SQNVLKGEELASLFFRMCTEVSVGHYMKQQAVGGTRATGLFSPIDTFAQLIVYLVKYHAD
PNGTDDEHAKVHYLTKILSILVLVLAHSHEELGARFQQRPFFRLFSSVLHDLHAAEGSLR
GAYQGALLALANALNTLQPLFFPGFAFAWVSLVSHRLLLPQLLQMGPSGVAAFHRLMLAQ
LRFLAPFLRQATLHDTTRLLYTSTLRVLLLLLHDFPEYLVEHHQSLCDGIPPNCIQMRNL
VLCAYPAKLRLPDPFAPSVRLASMPESALVPSMQYDTRTQLSSIPGALVLLDDLLHHRAA
ASTGAKLAEACRVPGTAETHYRECVLNAMVLYVAEAALKLQNTVHTGTVAADDALLDLFH
VLLRELEPEGRYLLLSAAANQLRFPSQHTAYLSAVLVALYAEDDTMVREQILRVLLERVI
VHRPHPWGLLYTFAQMLRLHTVPLPQAPPEIHTILEHMKKALLPDRPAAKAL
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
atgttgcacggactgcaagatacgccgatcgcgttgccgccggaagctagtggtttgggt
ctgttcgacgcagtccttgaccacattgctcaggcgcccgcaactttgacgccaggtcac
attgcgccgcttcttgtgtcgctcctggctgatgacaacaaaattacacacccaccacta
gacagcatgcagcgtcaagcactggttgcagcactgtatgagcgctatggcgatgccgtg
tccaccgccttggagcaacaaattcccaagctggccggccgccgcggcgctgctgaggtg
ttgatggactggggcagcgtgcctcttacacccaaacttgcacgagctgtgcttgtgcac
tgtggatggtctagcaaccctacaatcactgacgtcgcacaacttgtgtgtgtgttgctg
caagagtcgacaccctcaccgcagccaagcaccaacatgcaggtggtcgccgacgtgttg
aaccaaatggtgccgtccctggactggaaggcagtcattcagagcctagacgtgcccacc
actctggctgtcccccccagcaagggactgggtgtggccctaggcgcccttatccggggt
gcctcgcagccggtccaggccttgtcgggcctgtggggcgtctggtctcaccgtctgcga
cagttacaattgctctacgcgcttctgctgctgaatgaagatgcgtacagtgtcgcgcca
gtaccggtgcgccgtatcttgactatggcagacgtggctgaggcgccaagctcgatccag
gcacaagcgcaggctgcatgcgcctcgccttggaactcgatcgagctaatcgagacactg
atggaactggcgggtagcgcacctggcgcagaggacagcaacgaggtgggtcgcgctgta
acggcgatcctggagcgtgcgatccagacgcacgctgaatgtgtgctactgggactcgcc
gcactgccgtcatccaccaatgctgtgcacccggaactggtgacgaagctccttgccatg
ttcctggctggtcacccgtcacagcagttggtattttggcgcctatggcaaacacaaccg
gagcttctgctcagcaccttccagcggatctatgcagaggcaccgctgcagcttgcccgt
atcgtggaagtggcacaagagcttcagattgtcaacaagctgcttgagcagcgcccgctg
gcctttgcgcttgatgtggctgcgctcgcagcgcgacgggatctgctgcagctggagcca
tggctccagcagcggatcgccgatgcgccccccgaggcgcacatgatcgcgacagtgcta
gattttctcgagcacaagaccaaagaagacttaatgcggcgcgatccccaggcagagcct
gcgttcgtgcctctaaatgtgcagcaggtggcaacgtttctgcgcgtgctgagaggcttt
ggcgatgctatgagttccgaggaaattgagcacttcaagattgtgcgcaacctgtgtctg
caactgcacccccgcctcatgtctctgacgccgggttcggtcggtgtcgagcctggcttg
tctgtcgcatctttctctaaagatgtccatcgcgaggctgactcatggtaccgtcagatg
tacgaggagaaggtcagtgtggacgatatcatctcgctattgcgtcgctgcaaacactcg
gacgacgaccacgaacaccagctgttcgcttgcatggtgcacacgctgttcgacgagcac
cggtggtttgagctctactacccgccacgcgagctgcttatgactgcagttgtatttggc
tcgctcatccagtaccagctcatcgactcgattccattgggtatcgcgatccgctatgtt
gtcgatgccctgcgctcggcgcctgattcaaccatgtttcactttggtgtgcaagctctc
atgcgcttccagaagcgcctggctgagtggccgcagctttgtcagctgctgctctccctg
ccgacgctgcagcagacacatccagaattggttgcggctgtcaaccaggccttagcggcg
gctaaaagtggacagccactgcctgcgaacgatgaagtctttacctctgtgcgcgtcggt
aaggtggcagcagagggtcaaatcctccccgacgaggcactttcggaccagatcctcttc
ctgatcaacaacttgtcgccggtgaacttggaagagaagctccccttggcgcgcagcatg
atccgtgaggatttgctgcactggctggcgcgctaccttgtggcggagcgtgtgagtaca
gagccgaacaaccatgaattgtatttgcaattcttggagcgcctcgaactaccccgtgcc
tttgtatttgtactgcacgagacgatggcgaaacttaagggactgctcgaggcagagaag
acgacgcagtcctctcaggaccgcacggtcctgaaaaatttagcatcgtggctcggtctc
acgacgctggcgcaggaccgccctatcaagcaccgttacatggcgctgaaggagctgcta
ctgcaggggcacgaagtaggccgcctgattgtggcgattcctttcgtgtgcaaagtgctg
gagcattgcagtcgcagcaccgtcttccatcccccgaacccgtggctgatgggcgtgctg
cgactgttaggagagctgtaccaatttgcggacttgaagttgaacctcaagttcgagatc
gaggtcttgtgcaagagcttgcatgtggacctgtcgcagctcgagcctagtgctctgctg
ccaggccgccggcctgacccactgcctgcgcagcccagtgccgaatacgcgcacgttgtg
gtaggcatggatcaattggcggtgcaggactccatgacgtaccaagacatgtttgtgaca
atgttgcagaatatggcacagtacattgtgatcagtccccagatcgtcccgtacgccaac
agtgcggcctggaagcgcgtgatgtacgtggcgcttgagcgtgcgatccaagaaatcatc
acccccgtcgtggagcgcagtgtgacgattgcctccatttccacacgagagctcgtgagc
aaggactttgccatggagcctgacgagcaaaagatgcgaacggctgcccaccagatggca
cagaacatggcaggcagccttgcacttgtgacatgcaaagagcctcttcgcctcagtatt
cttgcgcatgcccgctcactctttgcggcaggtggtgttacggagcaggcgctcccggag
caggcattgctgttgctggtacaagacaacctggaccttgcgtgcgttgttatcgagaag
acggccatggaaaaggccttggccaaggtggacgagggtcttgcgaccgcctatgcgaca
cggcgtgagtacaaggcacatggccgcggtgccatgttctgggatggcactgccctctca
cactacagcacgacgctcccggatatgttgcgtatcgcgccgcctggtttgcagccttcg
cagttgcgggtgtacgacaatttggccatgacgcccatggcgcctcgcaccgaggaggag
ctcgagtacgacgacgggccggcaacggcccccatgggcggagtctcacttgtgcccgcg
cgcgcgttggagcgattcctcttgatggctgccgagcttgagcgcttcttttcggaggtc
ggcgagacacaatcgcttgctacgctacccagcaaccactttgtgcgccagatctcacca
caccttacggagctcgtgcttcattccgtccagcgggacgaaacggtgcttcttattgcc
caaaagacagtgcagctgctatacaaggcacaaacgcatttggcccgcgaggtatgggtt
gcggtgctggagcatttgtgcgagcagtcgcctagagtggccaaagaggtcactgcatgg
ctcgtatatgcggaagacgagcgcaagttccatgtgcctgttacgctggctctcgtgcgt
gcgaacttgatcggtattgccgaacaggaccagcagttggcaaagctgttgattcgctcg
cagttccgcgcctcggtggtggactttagcgctcagttggtgcgtgaatgtctccaagag
ggcctcgcgacgcgtgcgcagttcgcaacactgcttaatgcactacacagggcagcgcag
tttggacgtgcgacgccggcagcgcaacagttgctcgacgagctcgatcaattggcgccg
ggtgatgcggcacttgcgctgcgcgagcagcttgcctacagctttgccagctgggtgcgt
gtgtttcagcaggcaccccatcctgagaaggcctttatcgagtatgtgacgcaactgcag
agccagaacgtgctcaagggcgaagagctggcatcgctgttcttccgcatgtgcacagaa
gtaagcgtcgggcactacatgaagcagcaggccgtgggcggtactcgtgccaccggcttg
ttctcgccgattgacacctttgcgcagctaatcgtgtacctggtcaagtaccatgccgac
ccgaatggaactgacgacgagcatgctaaggtgcactacctgacaaagatcctctccatc
cttgtcttggtactggcgcactcgcatgaagagcttggcgcacgcttccagcagcgaccc
ttcttccgcctgttctcgagtgtgcttcacgacctacacgcggcagagggttcgctgcgt
ggcgcttatcagggtgccctacttgcgctggccaatgcgctaaacacgttgcagccactg
ttcttccctggctttgcgtttgcgtgggtgtcgctggtgtcacatcgtctgctgctgcct
cagctcctgcagatggggcctagcggcgtggcggctttccaccgcctgatgttggcgcaa
ctgcggttcctggcgccgttcctgcgccaagctaccttgcacgatacgacgcgtttgttg
tacacatcgacgctccgtgtgctgctgctgctgctgcacgacttccccgaatatcttgtg
gagcaccatcagtcactgtgtgatgggattccgcccaactgcatccagatgcgcaatctc
gttttgtgcgcatacccggccaagctgcgcttgcctgatcccttcgcgccgagtgttcgc
ctggcttcgatgcccgagtcggcgctcgtgcctagcatgcagtacgacacccgcacgcag
ctaagcagcatcccgggtgcgctggtgcttctcgacgacctgctgcaccatcgtgcggcc
gcctcgacgggtgccaagctggctgaggcctgtcgggtccccggtaccgccgagacgcac
taccgtgagtgtgtgttgaatgcgatggtgttatatgtggctgaagcggctttgaaattg
cagaacacggtacacactggcacggttgcggctgatgatgctctgctggatctgttccat
gtcctgctgcgcgagttggagccagagggccgatacctactgctgtccgctgcggccaac
cagctgcgctttccgtcgcagcacacggcgtatctgagcgccgtgctggtcgcgctgtat
gcggaggatgacaccatggttcgagagcagatcttgcgtgtcctgctggagcgcgtgatt
gtgcaccgcccacacccatggggactcttgtatacgtttgcccagatgctccgactccac
actgtgccgctccctcaggcaccgccagagattcacactatcttggagcacatgaagaag
gccctgttgcctgaccgcccagccgctaaggccttgtag
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