KEGG   Malassezia sympodialis: MSY001_3309
Entry
MSY001_3309       CDS       T06541                                 
Name
(RefSeq) uncharacterized protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
msym  Malassezia sympodialis
Pathway
msym03018  RNA degradation
msym03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msym00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MSY001_3309
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSY001_3309
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msym03019]
    MSY001_3309
   03041 Spliceosome [BR:msym03041]
    MSY001_3309
Messenger RNA biogenesis [BR:msym03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     MSY001_3309
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     MSY001_3309
Spliceosome [BR:msym03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    MSY001_3309
SSDB
Motif
Pfam: LSM Ntox34
Other DBs
NCBI-GeneID: 30058194
NCBI-ProteinID: XP_018741789
LinkDB
Position
Unknown
AA seq 119 aa
MVRCGRVLTECLVPDSQLVELKNSETFNGHLVACDNYMNITLRDVYQTSASGEQFWKMPE
VYIKGSTIKYCRVVDTLIDTVREAEEQARKQRQQAASHGHRGRHDGHRGRGHRGPRTRT
NT seq 360 nt   +upstreamnt  +downstreamnt
atggtgcgttgcgggcgagtgctgaccgagtgtctcgtgcctgacagtcagctcgtggag
ctgaaaaacagcgaaacgttcaacgggcatctggttgcctgcgacaactacatgaacatc
acgctgcgcgacgtataccagacgagtgcgagtggcgagcagttttggaagatgccggag
gtgtacatcaagggcagcacgatcaagtactgccgcgtggtcgatacgctgatcgacacg
gtgcgcgaggccgaggagcaggcgcgcaagcagcggcagcaggccgccagccacggccac
cgcgggcgccacgacggccaccgcggccgcggccaccgcggtccccgcacgcggacctag

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