Methylocaldum szegediense: MSZNOR_2775
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Entry
MSZNOR_2775 CDS
T09668
Symbol
rpoC
Name
(GenBank) RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msze
Methylocaldum szegediense
Pathway
msze03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSZNOR_2775 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msze03021
]
MSZNOR_2775 (rpoC)
03400 DNA repair and recombination proteins [BR:
msze03400
]
MSZNOR_2775 (rpoC)
Enzymes [BR:
msze01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSZNOR_2775 (rpoC)
Transcription machinery [BR:
msze03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSZNOR_2775 (rpoC)
DNA repair and recombination proteins [BR:
msze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSZNOR_2775 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
CAI8865389
UniProt:
A0ABM9I3S2
LinkDB
All DBs
Position
MSZNORmain:complement(2688701..2692906)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLINFLKRQNQAEEFDSIRISLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVSDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIALLLDMTLREIERVLYFESYVVIDPGMTPLTRGQLLTEEEYQQAVQQHGDEFVAKM
GAEAIYEMLKTMDLHKEVAKLREEIDSTNSETKIKKHTKRLKAIESLISSNNRPEWMILT
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFSKLQFRGLATTIKAAKKMVEKESPEVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMATNNILSPANGEPIINPTQDVVLGLYYMSRERLNAKGTGMVFADVAEVQRAFQTK
AVDIHARVNVRIEETTFGENGEKKTVRKRVDTVVGRALIWTIVPEGIPFDMVNQDMTKKA
ISKLINHCYRTLGIKATVVFADQLMYLGFSHATRAGISFGVDDMAIPTRKEEIIAAAEQE
VKEIQNQYASGLVTDGERYNKVVDIWSHANDQVAKVMMEGLGTEKVELPDGRIAEQKSFN
SIFMMADSGARGSAAQIRQLSGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEEDCGTTDGLLMSPLIEGGDVVEPLAERVL
GRALAEDVRDPSTQELLLTAGTILDEHAVSILEAHSVDNVRVRSVICCQTRYGVCATCYG
RDLGRGHKVNIGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAISNVEVKSSGTIKL
TNLKTVVNKDGNLVAVSRSGEVSVIDEHGRERERYKIPYGAVLSVREGSQVKAGQVVVNW
DPHTHPVVTEVKGYAKLVDFIEGVTVREQSDEVTGLSSMVVIDPKQRGSAGKDLRPMVKL
VDEQGNDIRIPATDIAAQYFLPAGAIIGIRDGDLVQVGDVLARIPQESSKTRDITGGLPR
VADLFEARKTKDPAILAEATGTVSFGKETKGKRRIIITDAHGNQHEVLIPKWRHITVFEG
EHVEQGETIAEGDLTPHDILRLRGVAELASYLVKEIQDVYRLQGVKINDKHIEVIIRQML
RKVEITDPGDTAFLKGEQVDRARVLEENDRIEAEGKIPACYEPVLLGITKASLSTESFIS
AASFQETTRVLTEAAIRGMSDKLLGLKENVIVGRLIPAGTGLAYHLDRKRRAKLAEGEEV
EATSAINAGDVEEALKQALSM
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatctcatcaacttcttaaagcgtcaaaaccaggcggaagagttcgatagcatc
cgcatcagtcttgcttcgcccgatatgattcggtcctggtcttacggggaagtgaaaaag
cccgaaacgatcaactatcgtaccttcaagcccgagcgagatggtttgttctgcgcaaag
atattcggtccggtcagtgattatgaatgtctttgcgggaagtacaaacgcctgaaacat
cgtggggtcatatgcgaaaagtgcggcgttgaagtcacgttgtctaaagttcgccgtgag
cgcatgggccatatcgaactggccagcccggtcgcacatatttggtttctgaaatcgctg
ccttcccgcatcgcgttgctgctcgacatgaccctgcgtgagatcgagcgcgtgctctac
ttcgagtcctacgtggttatcgatcctggtatgacccctctcacgcgcggtcagctgttg
accgaagaggagtatcagcaggctgtgcagcagcacggcgatgagttcgtcgcgaagatg
ggagccgaggcgatctacgagatgctgaagactatggacctccacaaggaggttgccaag
cttcgcgaagagatcgattcgaccaactcggaaacgaaaatcaagaagcacaccaagcgt
ctaaaggcgatcgagtccttgatctcatccaacaaccggccagagtggatgattctgacg
gtgttgccagtgttgccgccggagttgcgtccgctcgttcccctcgacggtggccgtttc
gccacctcggatttgaacgacctgtaccgtcgagtgatcaaccgcaacaatcgcctgaaa
cggctgctcgatctcaatgcgccggatattatcgtgcgcaatgagaaacgcatgcttcag
gaagcggtcgacgccctgctcgacaacggccgccgcgggcgcgccataaccggctcgaac
aagcgtccgctgaaatcgctggccgacatgatcaagggaaaacaggggcgtttccgccaa
aacctgctgggaaaacgcgtggactattccggccgttcggtcatcgtggttggtcctacc
ctgaagctgcaccagtgcggcttgccgaagaaaatggcgcttgaattgttcaagccgttc
atcttcagcaaacttcagttccgcgggcttgcgaccacaatcaaggccgccaagaagatg
gtagaaaaggaaagcccggaggtctgggatatcctcgacgaggtgatccgcgaacacccg
gttttgctgaaccgtgcgcctaccttgcacaggctcggtattcaagcgttcgaaccgata
ctgatcgaaggcaaggcgatccagttgcatccgctggtttgtacggccttcaacgccgac
ttcgacggcgatcagatggcggtccatgttccgctttctttggaagcgcaactggaagcc
cgcaccttgatgatggcgacgaacaacatactatcgccggccaacggcgagcccatcatc
aatccgacccaagatgtggtgttggggctctattacatgagccgcgagcggctcaatgcc
aagggaaccggcatggtttttgctgatgtggctgaggttcagcgcgcattccaaaccaag
gctgtcgacatccacgctcgggtgaacgtccgtatagaggagaccacttttggggaaaac
ggcgagaaaaagactgtccgtaaacgggtcgacaccgtcgtaggacgcgccctgatttgg
accatcgtaccggagggaattccgttcgacatggtcaatcaggatatgaccaaaaaggcg
atttccaagctgatcaatcactgctatcgcactttgggtatcaaagctacggtcgtattt
gccgatcagctgatgtacctcggcttttctcacgcgacacgcgccggtatctctttcggt
gtcgacgatatggccatcccgacccggaaggaagaaatcatcgcggccgcggaacaggag
gtgaaggaaatccagaaccagtacgcttctggcctggtgactgacggggaacgctacaac
aaagtggttgatatctggtctcatgcgaacgaccaggtcgccaaggtgatgatggaagga
ttgggtacggaaaaagttgagttaccggacgggcgaatcgcagaacagaagtcgttcaac
tcgatcttcatgatggccgactccggcgcgcgcggttcagcggcacagatccgccagttg
tccggtatgcgcggccttatggcgaaaccggacgggtcgatcatcgagacgcccattacc
gccaacttccgggaaggattggacgttcttcaatactttatctcgacacacggcgctcgc
aagggtctcgccgataccgcactcaagactgcaaactcgggttatctcacgcgccggctt
gtcgatgtcgcccaggatttggtcgtcaccgaagaggattgcggtaccactgacggtttg
cttatgtcgcctctgatcgaaggcggcgatgtggtcgagccgctggcggagcgggtgctc
gggcgcgcattggctgaagatgtcagagatccgtcgactcaggaattgcttttgaccgcc
ggcacgattctcgacgaacacgcggtaagtatcctagaggcccatagcgtcgataacgtc
cgcgtacgttcggtcatctgctgccagactcgttacggcgtttgtgcgacctgctacggg
cgcgatctgggacgcgggcataaggtcaatatcggggaggccatcggggtcatcgcagcc
cagtcgatcggcgaacccggcacccagctgaccatgcgtaccttccatatcggtggtgcg
gcatcacggtccgcagccatcagcaacgtggaggtcaagtcctcggggacgatcaagttg
accaatctgaagacagtcgtcaacaaagacggcaatttggtcgctgtctcgcgttccggt
gaagtgagcgtgatcgacgagcacggacgtgagcgtgaacgctacaagattccgtacggc
gccgttctatcggtgcgggagggcagccaggtcaaagcaggtcaggtcgtggtgaattgg
gatccccatacccacccggttgtgaccgaagtcaaaggatatgccaagctggtggatttc
atcgaaggtgtcacggttcgcgagcaatcggacgaagtgaccggtttgagctccatggtg
gtcatcgatcccaaacagaggggcagtgcgggcaaggatttgcggccgatggtcaagctg
gtcgacgagcaggggaacgatattcggattccagcgaccgatatcgcggctcaatacttc
ctgccggccggagccattatcggtattcgcgatggcgatttggtacaagtgggcgatgtc
ctggcgaggattcctcaggagtcgagcaagacccgcgacattactggtggtctgcctcgg
gtcgcagacttgttcgaggcgcgcaagacaaaggatcccgcaatcttggcggaggcgacc
ggtaccgtcagtttcggcaaagagaccaaaggcaagcgccgtatcatcatcaccgatgct
cacggcaatcagcatgaggtgctcatcccgaaatggcgtcacatcacggtgttcgagggc
gagcatgtggaacagggggaaacgattgccgaaggcgatctcacaccgcatgatatcctg
cggctacgcggagtcgccgagctggcgtcgtatttggtgaaggaaattcaggacgtttac
cgcttgcagggcgttaagatcaacgataagcacatcgaggtcatcattcgccagatgttg
cgtaaggtcgaaataaccgatcccggcgataccgcattcctgaagggtgagcaggtcgac
cgggcacgggttctggaagagaacgacaggatcgaggccgaaggtaagattccggcgtgc
tatgagccggtgctcttgggtattacgaaagcctcgctgtccaccgagtcgttcatttcc
gctgcatccttccaggaaaccacccgtgttctgacggaagcagccatccgcgggatgagc
gacaagctgcttgggttgaaggaaaacgtcatcgttggccgcttgattcccgccggaacc
ggcttggcctatcatctggaccgcaaacgccgagccaaactggccgagggtgaggaagtc
gaggcaacaagcgctatcaacgctggcgatgtggaagaggccttgaagcaggcgctaagc
atgtaa
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integrated database retrieval system
