Micromonospora terminaliae: GCE86_20440
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Entry
GCE86_20440 CDS
T06293
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mtem
Micromonospora terminaliae
Pathway
mtem03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mtem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCE86_20440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtem03400
]
GCE86_20440
Enzymes [BR:
mtem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCE86_20440
DNA repair and recombination proteins [BR:
mtem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GCE86_20440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGL49175
UniProt:
A0A6I5UF21
LinkDB
All DBs
Position
complement(4475501..4476460)
Genome browser
AA seq
319 aa
AA seq
DB search
MGAADETRAGVSLTNLDQPLFDGAGATKRDLVDYLDAVHERILPGLRDRPLSVVRVRPGQ
DPFMQKNLPKYTPDWVRRTSVWAEASHRSIFYALCDDRRTLLWFANQRAVEYHPTLGHAG
HPEHPTHLVLDLDPPPGDSFTMAVRTALLVRQALTDAGLAGAVKTSGAKGLHVIVPVDPA
TTAEEAAAATRALAARAERLDPALATTAFIVEDRGGRVFVDSTRSYGATVVAAYSPRIRP
GTPVSYPVGWADVESATPADFTVKTVPGLLGDRDPWAEALPAPQRLPEELVAEGRTIPVA
RVQAMHEGKRRAKARREAG
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccgctgacgagacccgggccggggtgtcgctgaccaatctggaccagccgctg
ttcgacggggccggggccacgaagcgtgacctggtcgactacctggacgcggtgcacgag
cggatcctgcccgggctccgggaccggccgctgtcggtggtccgggtgcggcccggccag
gacccgttcatgcagaagaacctgccgaagtacacgccggactgggtgcgccgcacctcg
gtctgggcggaggcctcgcaccgcagcatcttctacgcgctctgcgacgaccggcgcacc
ctgctctggttcgccaaccagcgggccgtcgagtaccacccgacgctgggccacgccggc
cacccggaacaccccacccacctggtgctcgacctggacccgccgccgggcgactcgttc
accatggcggtccgcaccgcgctgctggtccggcaggcgctcaccgacgccgggctggcc
ggggcggtgaagaccagtggggcgaaggggctgcacgtgatcgtgccggtggacccggcc
accaccgccgaggaggccgccgcggcgacccgggccctcgcggcccgcgccgagcggctc
gacccggcgctggcgaccacggccttcatcgtcgaggaccggggcggccgggtcttcgtg
gactccacccggtcgtacggggcgaccgtggtggccgcgtacagcccccggatccggccg
ggcacgccggtgtcgtacccggtcggctgggccgacgtcgagtcggccaccccggccgac
ttcaccgtgaagacggtgccggggctgctcggcgaccgggacccgtgggccgaggcgctg
cccgcgccgcagcggctgcccgaggagctggtggccgaggggcgcaccatcccggtggcc
cgggtgcaggccatgcacgagggcaagcgccgcgcgaaggcccgccgcgaggccggctga
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