Massilia oculi: DIR46_02775
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Entry
DIR46_02775 CDS
T05448
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mtim
Massilia oculi
Pathway
mtim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mtim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DIR46_02775 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtim03400
]
DIR46_02775 (ligD)
Enzymes [BR:
mtim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DIR46_02775 (ligD)
DNA repair and recombination proteins [BR:
mtim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DIR46_02775 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AWL03485
UniProt:
A0A2S2DDR0
LinkDB
All DBs
Position
complement(608184..610742)
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AA seq
852 aa
AA seq
DB search
MPDALKVYKAKRNFTITSEPAEGGTPGLDALTFVIQKHWASRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVHVEDHPISYSDFEGTIPAKQYGAGKVIIWDKGTWEPLEDPHKGFA
KGSIKFEMHGHKMRGRWTLVRMKGRGNEKQEPWLLIKEKDEYARSSEEFSLVDEMPDSVK
DLPMPGRVQRKVDALRADEEAAPAPKKRAAAKKAAKKAPASPSAKVALPEKFSPELATLV
DAPPPDPENWVFEVKFDGYRMLARIEDGAVRLITRNANDWTDKLLPLKAELERMKLPDGW
YDGEIVVHDEHGKPDFGKLQQAFDGKHAERIDFFLFDLPYFDGHDLRELPLVDRRGLLEK
LLAKKTSDKVRFSAEFGDKPDELVIAACKIGLEGVIGKRRDAPYVSRRSPDWIKLKCGLR
QEFVIGGFTDPKGSRTGIGSLLLGTYDEEGVLRYAGNVGSGFNHSSLTSIAQRLEKLRSD
ESPFPPRAVPGRKHHWVKPVLVAEVSFSEWTGAGAVRHPVFQGLREDKPAKGIKREKAQH
MTDATPNDDEDPVAASGKLPASMKITNGDRVIDRESGATKLDLIRYYALVGELMMAHLKG
RPVSLVRAPEGVGGELFFQKHADVRKMPGLRQLDQALDPDHPPMLEVAKVEGILSSAQWN
VVEIHTQNAFKGSYQKPNRMVFDLDPGQGVEWPAMQEAAQLMHAFLDELGLPAFLKTSGG
KGLHVVVPIKGGHDWDTVKAFSQAIVRHMADTLPDRFAFKSGPKNRVGKIFIDYLRNGQG
ATTVAAWSARVRPGLGISVPLRWEELPGLTSSTQWTVANVHTRLDEGNAPWEGYATAART
LTKAMKALGFEP
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgcactcaaagtctataaagccaagcgcaacttcacgatcacgtcagaaccg
gccgaagggggtacgcccggactcgatgccctgaccttcgtcatccagaagcactgggcc
agccgcctgcattacgatttccggctcgagctggatggcacgatgaaaagctgggcggtg
ccgaaaggccccagctacgacacccacgacaagcgcatggcggtgcacgtcgaggatcac
ccgatctcgtattccgatttcgaaggaaccattccagccaagcaatacggagcggggaaa
gtgatcatctgggacaagggtacctgggaaccgcttgaagacccgcacaagggttttgcc
aagggcagcatcaagttcgagatgcacgggcacaagatgcgcggccgctggaccctggtg
cgcatgaagggccgcggcaacgagaagcaggagccgtggctcctgatcaaggagaaggac
gaatacgcgcgctcgtccgaggagttctcgctggtcgacgagatgccggacagcgtcaag
gatctgccgatgcccgggcgcgtgcagcgcaaggtcgacgcgctgcgcgcagacgaggaa
gcggcgccggccccgaagaagcgggcggcggcgaagaaggccgcgaagaaagcgccggcg
tcgccatccgccaaggtcgccttgcccgagaaattttctcccgagctggccacgctggtg
gacgcgccgccgcccgacccggagaactgggtattcgaggtcaagttcgacggttaccgc
atgctggcgcgcatcgaggacggcgcggtacgcctgatcacgcgcaatgccaacgactgg
accgacaagctgttgccgctcaaggccgagctggagcgcatgaagctgcccgatggctgg
tacgacggcgagatcgtggtccacgacgagcacggcaagcccgatttcggcaagctgcag
caggccttcgacggcaagcatgccgagcgcatcgacttcttcctgttcgacttgccgtac
ttcgacggccacgatctgcgcgagctgccgctggtcgaccggcgcggcttgctcgaaaaa
ttgctcgcgaaaaagacgtcggacaaggtgcgcttctccgcggaattcggcgacaagccg
gacgaactcgtgatcgccgcctgcaagatcggcctggaaggcgtgatcggcaagcgccgc
gacgcgccctatgtgtcgcggcgctcgcccgactggatcaagctcaagtgcgggctgcgc
caggaattcgtgatcggcggcttcaccgatcccaaggggtcgcgcaccggcatcgggtcg
ctgctgcttggcacctacgacgaggaaggcgtgctgcgttacgcgggcaatgtcggctcg
ggcttcaaccattcctcgctgacctcgatcgcccagcgcctggaaaagctgcgcagcgac
gagagtcccttcccgccgcgcgccgtccccggccgcaagcaccactgggtcaagccggtg
ctggtggccgaagtcagcttctcggaatggacgggcgccggcgccgtgcgtcatccggta
ttccaggggctgcgcgaggacaagccggccaagggcatcaaacgtgaaaaggcacagcac
atgaccgatgcgactccaaatgacgatgaggatcccgttgcggcatccggcaagctaccg
gcatcgatgaagatcacgaatggcgaccgtgtgatcgacagggaaagcggcgcgaccaag
ctcgacctgatccgctactacgcgctggtcggcgaactgatgatggcgcacctgaagggc
cgtcctgtgtcgctggtgcgcgcacccgagggcgtgggcggcgagctgttcttccagaag
cacgccgacgtgcgcaagatgcctggcctgcgccagctggaccaggcgctcgaccccgac
catccgccgatgctcgaagtggcgaaggtggaaggcatcctgtcgtcggcgcagtggaac
gtggtcgagatccacacccagaacgcgttcaagggcagttaccagaagccgaaccgcatg
gtgttcgacctcgacccgggccagggcgtcgaatggccggcgatgcaggaggcggcccaa
ctgatgcacgccttcctcgacgaacttggcttgcctgcttttctcaagaccagcggtggc
aagggcctgcacgtggtggtgccgatcaagggcggccacgactgggataccgtcaaggcg
ttctcgcaggcgatcgtgcggcatatggccgataccttgcccgatcgcttcgccttcaag
agtggcccgaagaaccgggtcggcaagatcttcatcgactacctgcgcaacgggcagggc
gcgaccaccgtcgccgcctggtcggcgcgggtgaggcccggactcgggatctcggtgccg
ctgcgctgggaagagttgccgggcctgacatcgagcacgcagtggactgtggccaatgtg
cacacacggctggacgagggcaatgcgccgtgggagggttatgccacggcggccaggacg
ctcacgaaagcgatgaaggcgctcgggttcgagccctga
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