Thermothelomyces thermophilus: MYCTH_2306855
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Entry
MYCTH_2306855 CDS
T02231
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mtm
Thermothelomyces thermophilus
Pathway
mtm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYCTH_2306855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtm03019
]
MYCTH_2306855
Messenger RNA biogenesis [BR:
mtm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MYCTH_2306855
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
MYCTH_2306855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_HEAT
CNOT1_TTP_bind
Motif
Other DBs
NCBI-GeneID:
11513956
NCBI-ProteinID:
XP_003664247
JGI:
2306855
UniProt:
G2QEX3
LinkDB
All DBs
Position
4:complement(join(2573941..2573982,2574047..2579988,2580080..2580404,2580543..2580800))
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AA seq
2188 aa
AA seq
DB search
MVPQPRPGTFSPSPAAQPLYTGTAHSPHPSHAGALSAGASPSTSSPTGSSSLTKIAVAQV
YLLLSTIKEDKDDPRKWESQIESLRKLLDEHGMDVFTRYFARLVAANASQIFPGLNRPGP
NPGNHHLLVAEMKKLSREFPQARKIAESIETGTEDIFRDFDLSGFMEHFQLDALQKTVLA
LAFKLGSRADLKTKADAILSTNFPTFVNILSQANGEHRDLDPDFVAELLDRFIQVHPPNF
NAAAKRELEHKVQQRYAQSPDAKPPPAQVLSALDLVRMLADKPPNALALYIHRTGPAFTA
DEETCTNFLQNRPTNVHLSEEQVSVALMYTTISQTPRHNPSVLVASLRRILPDTFSWQDV
VSCFDHSGARVTSAQFLRLYNALLPIAQEDGDRFDIQRLWGGEWENPETQLSFICAFASL
KPEQLDATTIPRLKPTFTVEEYAQSSPQIRETAAHAVKHPLVSEAALSAVFNVALHSMHA
SQSIEAKRLFQDVVIRNLAIFVVSAFGVPKPWPSMAEDTLVSLFDNFLTRSPEADFVMDS
LWRRDKEWVKQRLIDAHALKPICLPLIFEHAVRQNWLDELVYLPIGFGLDLTALAHAEGY
LDLQQWARRNADRAPEMARALLQFLLIKANFELQYQRPPEGQPPIKASTTLQVRTVHALL
QILEEFLPKTPMQELIVVQRTCITVYPRLINYGEGFDDIIDANGRDGNALPPAANAKMEE
HYKKMYGDEIQVRNVVEILERYKRSRDPLDQDIFACMIHGLFDEYAHYVDYPLEALATTA
VLFGGIISHKLISDLPLQIGLGMILEAVRDHHPDEPMYKFGLQALMQLFGRLREWPGFCA
QLIQIPGLQGTEAWKKAEEVVREHDEELARSRNGAGMANSGIIGHDGLTNGNREDNLGSE
QHPPPFTSVNVDPPPPGVVYEDPSEEAQGKIQFVLNNLTDTTLHSMFKEIRDMLEVKHQQ
WFASHLVEERAKMQPNYHHVYLELVKQFEDKALWAEVLRETYISVSRMLNSELTMQNSTE
RAHLKNLGGWLGLLTLARDKPIKHKNIAFKQLLIEAHDTKRLIVVIPFVCKVLIQGASSN
IFKPPNPWLMDIIHLLIELYHNAELKLNLKFEIEVLCKGLNLDHKAIEPSGEILNRAPVE
ELGDMMGPEALENFENLSLNGMPGVNNALSSHPAFTIPDLGPSLSIPQTEVVSAAKLHEI
VRQALTRALQDIIQPVVDRSVTIAAISTHQMVRKDFATEPDENRVRTAAINMVKSTAGSL
ALVTSKEPLRANLANYLRNLSADLPQGLPEGIIMLCVNSNLELASSIIEKCAEERAIPEI
EDLMEPELEARRRHRLQRPSEPYIDHGLSRWAMTIPHPFKLQPSLGGLNAEQMAIYDDFA
RQSRANPAAAGPPHGPSASDARTLPSETLGDQYSAVSSMPTPAETPSMPHLGAQLQHYPQ
VHLAMANGRQAGLNQIDSRSIADRINKLLEQLTTTAASATEEHFSDLPRSHPVLDIVDAL
VQLVIKTQQTSEEFVAYAANQISQLLFRQPEGDLLLETLVHVLETLRKIAGPVISEQIRQ
LFHQQPGQLFLSLPLITALLPTDLLDWRNIDAATAELLQQRKEGSITFLEQLMDLTLLND
SPLALYADFVRSLEEAWSWITEEPDVPGAARFKSKVLAPPPELPANLSKEELDAIQLDQM
DYIFEEWIHLCNNRFATEKSAMIFVQQMHSRGVVSNREDFLLFTRLALDKSVERFEQSIH
SDGGLTEAYQALEALVRMIMIFVKSHQDNEQSAGVAFLESVLSLSVLVLNSHHAKRGERF
NQRVFFRFYSLILHELADLARHHLSESDYQQFILKFAARLYDLRPSLYPGFIFGWTELVA
HRNFVPVILRLPDRAGWAPFTKLLTQVLSYLGDLLKPFSVSPLAKGIYHGVLRFLAILHH
DFPEYIAASHVELCQSIPPHVTQLINFILTATPPAFNKAADPLQPGLKADRIPEMREAPM
TLFDSAGVLREIGLLNIVEHALQNGPSEDAIAQINHAINKVEAEETAFGFVPIGVNRRVI
AAVVAQFAHFAVTRAGSKSDAPIFVPGASDVKTLRMLVTEVSPEARYYLLCSMVNELRYP
NASTNYFSHALLELFGQDMSDPEETDIRQQIVRILLERLVGYWPQPWGLMITVLELLKNE
KYHFFELQFIKSTPEVAQRFAEILRPAA
NT seq
6567 nt
NT seq
+upstream
nt +downstream
nt
atggtcccccaacccagaccgggaaccttctcgccgagtccagcagcgcagcccctctac
actggcaccgcccactctccccatccctctcacgccggtgcgctgagtgcgggtgccagc
ccaagtaccagcagccccactgggtcgagttccctgaccaagatcgcagtcgcccaggtt
tatctccttctgagcaccatcaaagaggacaaggacgatcctcgcaagtgggagtcacag
atcgagtctctgcgaaagctgctcgatgaacacggcatggatgtgtttacaagatacttc
gcgcgactggtggccgcaaatgcctcccagatcttcccgggcctcaatcggccggggccg
aatccgggaaatcatcatttgctcgtagccgagatgaagaagctgtctcgggaattcccc
caggccagaaaaatcgcggagtccatcgagaccggcaccgaggatatattccgcgacttt
gacctctccggcttcatggaacacttccaactagatgctctccaaaagacagtgctggct
ctggccttcaagctcggatctagggccgacttgaagactaaagccgatgccatcttatcc
accaacttcccgacatttgtcaatatcctgagccaagcaaacggagaacatcgtgaccta
gatcccgacttcgtcgccgagcttctcgaccgcttcatccaagtgcacccccccaacttc
aacgccgcggcgaagcgggagttggaacacaaggtgcagcagagatatgcccagtcaccc
gacgccaaaccacccccggcccaagtgctctcggcgctcgatctggtgcggatgctcgct
gataagccgcccaacgctcttgcgctctatatccaccggacaggtccggcgttcaccgcg
gacgaggagacgtgcacgaacttcctacagaaccgccccaccaatgtccatctcagcgag
gaacaagtgtcggtggcattgatgtacacgaccatcagccagacaccgcggcataatcct
tcggtcctcgtcgcttctctcaggcgcattctccccgacaccttcagctggcaggacgtg
gtctcctgcttcgaccacagcggggctcgggtgacgtcggcccagttcttgcgcctgtac
aacgccctgttgccgatagcgcaggaggacggcgaccgcttcgacatacagcgcttgtgg
ggtggggagtgggagaacccagaaacacagctctccttcatttgcgcgtttgcatccctc
aaaccggaacaactggacgcgacgacaatcccgaggctgaaaccgaccttcacggtagag
gagtacgcgcagtcgtcgccacagatacgagagacggcagcacatgccgtgaagcacccc
ctcgtctccgaggcggccctttctgccgtctttaacgtcgcgctccactcgatgcacgcc
tcgcagagcatcgaagccaagcgcctctttcaggacgtggtcatccgcaacctggccatc
ttcgtggtctcggcattcggcgtccctaagccctggcccagcatggccgaagatacacta
gtgtcgctcttcgataacttcttgacaagatcgcccgaggccgactttgtcatggacagc
ctttggcgaagggacaaggagtgggtcaagcagcggctcatcgacgcgcacgctctgaag
cctatctgcctgccgctcattttcgagcacgctgtccgccagaactggctcgatgagctc
gtctacctgccgatcggcttcgggcttgaccttaccgccctggcccatgctgaaggctat
ctagatctgcagcagtgggctcgaaggaacgccgatagggctcccgagatggccagggca
ctgctccagttcttgttgatcaaggcgaactttgagctgcagtatcagcgccctccggaa
ggccaaccacccatcaaggcgagcacaaccttgcaggttcggacagtccatgcactgctt
cagatcctggaggagttcttgcccaagacgccaatgcaagagctgattgtggttcaacgg
acctgcatcaccgtgtacccgaggctcatcaactatggggagggcttcgacgacatcatc
gacgcgaacgggcgcgatgggaatgcgctcccgccagccgccaatgccaagatggaggag
cactacaagaagatgtacggcgacgagatacaagttcgcaacgttgtcgagattctggag
cggtacaaacggtcccgcgatcccttggaccaggacatcttcgcgtgcatgatacacggc
ttgtttgacgagtacgcgcattatgtcgactacccgctggaggccctggcaacgaccgca
gttctgttcggcggcatcatatctcacaaactgatctcggatcttccgctgcagattggg
ctgggcatgatcctggaggccgtccgagaccaccatcccgatgagccaatgtacaagttt
gggttgcaagctttgatgcaactctttggtcgccttcgggagtggccgggcttctgcgca
cagctcatccagatccccggtctccaggggaccgaggcatggaaaaaggcagaggaagtg
gtccgcgagcacgacgaggaactcgcacgctcccgcaacggcgccggcatggccaattcc
gggatcatcgggcacgacggcttgaccaacggcaaccgggaggacaacctaggatcggag
cagcatccgccgccgttcacctcggtgaatgtggacccgcctccgcctggtgttgtgtac
gaggaccctagcgaagaggcccaagggaagatccagttcgtgctcaacaacctcaccgac
accacgctgcattccatgttcaaggagatccgcgacatgctggaagtcaaacatcaacag
tggttcgccagccacctggtcgaagagcgcgcgaagatgcagccaaactaccatcacgta
tacctggaactcgtcaagcagttcgaggataaggcgttatgggccgaggtgctgcgcgag
acctacatcagcgtatcacgcatgctcaactcagagctgaccatgcagaactctaccgaa
cgggcgcaccttaagaatctcggaggctggcttggtctcctgaccctggcgcgagacaaa
ccaatcaaacataagaatatcgcgttcaagcagcttcttatcgaggcacacgataccaag
cgcctcatcgtcgtcatccccttcgtgtgcaaggtgctgattcagggcgcgtcctcaaac
atcttcaagccgcctaatccttggctgatggacattattcatctcctaattgaactttac
cacaatgccgagctgaagctgaatctcaagttcgagattgaagttctctgcaagggcctc
aatctggaccacaaagccatcgaaccatccggcgagatccttaatagggctcccgtggag
gagttgggtgacatgatgggcccggaagctctcgagaatttcgaaaatctctccctcaac
ggcatgcccggggttaacaatgccctctcgtcacacccggcctttaccattcctgacctt
gggccgagcctttcgattcctcagactgaggttgtcagcgctgccaagctgcacgagatc
gtccggcaagccttgacgcgcgcgttacaggacatcattcaacccgtcgttgatcgctcg
gtcacgatcgcggcgatttcgacgcaccagatggttcggaaggacttcgcgaccgagccc
gacgagaatcgtgtgcggacggcggcgatcaatatggtcaagtcaacagccggcagcctg
gcgctcgtcacctccaaggagccgttgcgcgcaaacctcgccaattacttgcgcaacctg
tccgccgatctaccccaagggctacccgagggcatcatcatgctgtgtgttaactccaac
cttgaactggcctcgagcatcatcgagaagtgcgctgaggaacgtgcgattccggagatt
gaagatttgatggagcccgagctggaggcgcggcgccgccaccggcttcagcggccttcc
gagccctacatcgaccacggattgagccgctgggcgatgaccattcctcacccgttcaag
ctgcagcctagtctcggcggcctgaatgccgagcagatggccatctacgacgactttgcc
cgccagtcaagggccaatcctgccgcggcgggacccccgcatggaccgtcggcgtcggat
gccaggactttgcccagcgagactcttggcgatcagtacagcgctgttagcagtatgccg
actcctgcggagactccgtcaatgccccatctgggagcgcagcttcagcactacccgcaa
gtgcaccttgcaatggcgaacggccgacaggctgggctcaatcagatcgactcccggagc
attgctgataggatcaacaagctactcgagcagctgacgaccactgcggccagcgcgacc
gaggaacatttcagcgacctcccgaggtcccacccggtcttggacatcgtcgacgccctg
gtccagctcgtcatcaaaacacagcagacgtccgaggagttcgtggcttatgccgcaaac
caaatctctcagctcctcttccgtcagcccgagggcgatcttctcttggagactttagtg
cacgttctcgagactctccgcaagattgccgggcccgtgattagcgaacagatccgccag
ctcttccatcagcaacctgggcagttgttcctcagcctgcccctcatcacagccctgctt
cccactgacctgctcgactggaggaacatcgatgccgcgacagcggagcttctgcagcag
cgcaaggagggatcgataaccttcctcgagcagctcatggacctcacgcttctcaacgac
agcccgctcgccctctatgctgattttgtccggagcttagaggaggcgtggtcgtggatc
acagaggagccagacgtccccggggcagcacgcttcaagtcgaaggtgctggcgccgccg
cctgagctacccgccaatctgtccaaagaggagctcgatgctatccagctggatcagatg
gattacatttttgaggaatggattcatctgtgcaacaaccgctttgccaccgaaaagtcc
gccatgattttcgtccagcagatgcattcgcgcggcgtcgttagcaacagagaggatttc
ctgctcttcactcgtctggctctcgacaagtctgtcgagcggttcgagcagagcatccat
tcggacggcggcttgacggaagcgtaccaggcccttgaggcactggtcaggatgatcatg
atctttgtcaaatcccaccaagacaacgagcagtcggcaggtgtggcgtttttggagtcg
gtcctgtccctcagcgtgctggtgctgaacagtcaccatgccaagaggggtgagagattt
aaccagcgcgtcttcttccggttctactcgctcatcctgcacgagctggcggatctggcg
aggcatcacctatcggagagcgactatcaacagttcattctgaagtttgcggcgcgtctg
tacgatctccgccccagtctgtacccgggcttcatcttcggctggacggagctcgtcgcc
catcgcaacttcgtgcccgtgatcctccgcctcccggacagagcaggttgggcaccgttc
acgaagctgctcacgcaggtcctctcgtatctgggggaccttctgaagccattcagcgtt
tcgcccctggccaagggtatctaccacggagtgctgaggttcttggcgatcctccatcac
gatttccccgagtacattgccgcatcacatgtggagttgtgccagagcattccaccccat
gtgacacagctcatcaactttatcctcactgccactcctcccgccttcaacaaggcggcg
gaccccttgcagcctgggctcaaggcagataggattcccgagatgagggaagctcccatg
acgctgtttgactcggccggtgtgctacgggagatcggcctgctcaacattgtggagcac
gcgttacagaacggcccttcggaggacgccatcgctcagatcaaccacgccatcaacaaa
gttgaagccgaggagaccgcttttggcttcgtcccgatcggggtcaaccgtcgggtcatc
gcggctgtggttgcgcaattcgcccacttcgccgtcacccgtgctggctctaagagcgac
gcgcccatcttcgtgcccggggcgtctgatgtcaagacgctgcgaatgcttgtcaccgaa
gtgtctcccgaggccaggtactaccttctgtgcagcatggtcaatgagctccggtacccg
aacgcgtcaaccaactacttcagtcacgcgctgctggaactctttggtcaggacatgtcg
gacccggaggagacggatatccgccagcaaattgtgcgcatcctgcttgagaggctggtt
gggtactggccgcagccgtggggcctcatgatcacggtgctcgagttgctcaagaatgag
aaataccacttcttcgagctgcagtttatcaagtcgacgccagaggtggcccaaagattt
gcggaaatcctccgcccggctgcttaa
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