Methanothrix thermoacetophila: Mthe_1361
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Entry
Mthe_1361 CDS
T00417
Name
(GenBank) ribosomal RNA-processing protein RRP42
KO
K12589
exosome complex component RRP42
Organism
mtp
Methanothrix thermoacetophila
Pathway
mtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mthe_1361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtp03019
]
Mthe_1361
Messenger RNA biogenesis [BR:
mtp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Mthe_1361
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Mthe_1361
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ABK15136
UniProt:
A0B8W2
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All DBs
Position
complement(1458327..1459100)
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AA seq
257 aa
AA seq
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MSSVISEIRKDYLYNLLLRGERADGRSFTQYRPIEIERNIIKKAEGSALVKLGKTQVMVG
IKIQPGEPFPDAPNRGVIVTNAELVPLASPIFEPGPPNEYGIELARVVDRGVRESGSVDL
DALCIVPGEKVWIIFIDIHILDDCGNIMDASSLGAIAALLGATVPASRFGLGEDFQLPVR
DIPIATTAVEFGDVVLFDPDVDEEAIADAKLTVITKADGTICGMQKSGPGMLSEDQVYRI
VDIACDNAREIREKFLE
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtgtgatatctgagataagaaaggactacctgtacaacctgctgctgcgcggc
gagcgtgcagatgggagatcctttactcaatacaggccgatagagatcgagaggaacata
ataaaaaaagctgaaggcagcgctcttgtcaagctcggaaaaacccaggtcatggtcggg
atcaagatacagccgggcgagccgttcccggacgctccaaaccgtggtgttatagtaacg
aatgcagagcttgtgccgctggcatctccgatattcgagccgggaccgccgaacgagtac
ggaatagagctcgcgcgggttgtcgacaggggagttcgcgagtctggttctgttgatctc
gatgcactctgcatcgttcccggggagaaggtctggataatattcatagacatacacata
ctggatgactgtgggaatatcatggatgcatccagcctcggcgccatcgcagcgcttctc
ggagccactgtgccggcgagccggttcggtctcggcgaggacttccagcttccggtcagg
gatatacccatagccacgacagccgtcgaattcggggatgttgttctcttcgatccggat
gtggatgaggaggcaatagccgatgccaagctcacagtgataacaaaggcagacggtacg
atatgcgggatgcagaagagcgggccggggatgctctctgaggatcaggtgtaccgcatt
gttgatatagcatgtgataatgctagggagatccgagagaagtttctggaatga
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