KEGG   Medicago truncatula (barrel medic): 112421905
Entry
112421905         CDS       T01716                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
  KO
K07466  replication factor A1
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
mtr03440  Homologous recombination
mtr03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112421905
   03420 Nucleotide excision repair
    112421905
   03430 Mismatch repair
    112421905
   03440 Homologous recombination
    112421905
   03460 Fanconi anemia pathway
    112421905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mtr03000]
    112421905
   03032 DNA replication proteins [BR:mtr03032]
    112421905
   03400 DNA repair and recombination proteins [BR:mtr03400]
    112421905
Transcription factors [BR:mtr03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    112421905
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    112421905
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     112421905
   MMR (mismatch excision repair)
     112421905
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     112421905
SSDB
Motif
Pfam: Rep_fac-A_C Rep-A_N REPA_OB_2 zf-CCHC tRNA_anti-codon zf-CCHC_3 zf-CCHC_2 zf-CCHC_5 DUF936
Other DBs
NCBI-GeneID: 112421905
NCBI-ProteinID: XP_024639787
LinkDB
Position
5:11148712..11152670
AA seq 904 aa
MAVNLTQGAIVTMCFTSEDLHPVLQVIDLKLVQSQQNSGTERYRVVLSDGLHYQQGMLAT
QKNELVHSGRLQKGSIVKLSQFICNVVQNRKIIIIVDLDVIMDKCDLIGKPDPAPKEDPA
QSAVSHAGNVQSAAGHLGSNAGNSQYLNSGSHTGGGVNVRPNVALPSMDRPTVNPPASVV
YSNGSGSARYGASNAPPPYPKPEPGVSLNRPASVNGSSGEQNTSFRNPLCETSRPVQNSY
VRPPQPVNQQPSPMYNRGPTGRNDAPPRIIPISALNPYQNMWTIKARVTAKGELRTYTNS
RGQGKVFSFDLLDSDRGEIRATCFNTVAEQFYNVIEVGKVYLVSRGSLKPAQKNFNHLPN
DQEITLDITSVIQPCVDDNSILQQIYNFRPIGDIENMQNNSIVDVIAVVTSISPTASIIR
KNGTETQKRSLQLKDMSGRSVELTVWGSFCNTEGQKLQNICDSGEFPILVVKSARVNDFN
GKSIGTIATSQLLVEPDFPEAFTLRGWFDQEGRNVPSQSISRESSSFGKSEVQKTISQIK
DENLGTSDKPDWISICANVVFFKYDNFYYTACPNMIGDRKCNKKVTDNGDKTWHCERCDT
SLSCDYRYLLQMQIQDHTGMTWVTAFQEGGEDIMGMPAKDLFSVKFEEKDEEKFKEIISK
VVFTKYMFKLKVKEETFNDEARVKSTVVKAEKIVNFASESKSLLDLIDKLKSEKAEGTTI
NSAINTTGPGSLPIGQATPPVYNPINSNTNTGRDYGTPANQVSQYGNQHNSSFASSGAPG
SYMSCSNCGGSDHSSAQCLHLRNPPEQTAGGAYVNTVSGSGGASGKCYKCQQPGHWASNC
PSMSAANRVSGGSGGASGNCYKCNQPGHWANNCPNMSAAPQSHGNSNTGQGRYGIAQNQP
DGRC
NT seq 2715 nt   +upstreamnt  +downstreamnt
atggccgtgaatctaactcagggtgcgatagtaacgatgtgtttcacatcggaagatttg
cacccggtgttacaagttatcgatttgaagcttgttcagtcgcagcagaatagtggtact
gagagataccgagtcgttctctccgatggtttgcattatcaacaaggaatgctcgctaca
cagaagaatgagttggttcattctggaaggttgcagaaaggttccattgttaagctttct
cagttcatctgtaacgttgttcagaatcgcaaaattatcatcatagttgatttggatgtt
ataatggacaaatgtgacttgattggaaaacctgacccggcaccaaaagaagatcctgca
caatctgctgtgagtcatgcaggaaatgtacaatcagctgctggtcatttaggaagcaat
gctggaaactcacagtatttgaacagtggttcccatacaggtggtggtgttaatgttaga
ccaaatgtagctctgccatctatggatcgtccgaccgtgaatcctccagctagcgttgtt
tattctaacggttctggatctgcaagatacggtgcatctaatgcccctccaccttatcct
aaacctgagcctggagtcagtttgaacagaccagcgtcagtgaatgggtcttctggtgaa
cagaatacaagtttccgcaatccactatgtgagacttcaagaccagtgcaaaattcttat
gttcgccctcctcagcctgtgaaccaacagccatctcctatgtacaacagagggcctaca
ggaagaaatgatgctcctccaaggataattcccatatctgctttgaatccatatcagaat
atgtggacaattaaagccagagtaacagctaagggagaacttaggacctataccaattcc
cgaggtcagggaaaagtattttcttttgatcttttggattccgaccgtggagaaatacgg
gcaacttgctttaataccgtggctgaacagttctataatgtaattgaagttggtaaagtc
tatctggtttccaggggaagtctgaagccagctcagaagaattttaatcacctacctaat
gatcaagagataactcttgatatcacatcagttatacagccatgcgttgatgataactca
attctacaacagatctacaatttccgtcccattggtgacattgaaaatatgcaaaacaac
agcattgtggatgtgattgccgtggttacttctatcagtcctacagcatcaatcatcaga
aaaaatggcactgaaacacagaagagatctctgcagttgaaagacatgtctggccgaagt
gttgaattaactgtatgggggagtttttgcaatacagaaggacaaaagctgcaaaatatt
tgcgactctggggaatttccaattttggttgtaaaatctgccagagtaaatgatttcaac
gggaaatctattgggaccattgccaccagccaattattggtagaacctgattttccggag
gcttttacactgaggggatggtttgaccaggaagggaggaatgttccaagtcaatctatt
tccagagaatcatctagttttggtaaaagtgaagtgcagaagactatatctcaaattaaa
gatgaaaacttagggacttcagacaagcctgattggatatctatatgtgcaaatgttgta
ttttttaaatatgataatttttactacacagcttgtcctaacatgataggagataggaaa
tgtaataaaaaggttaccgacaatggggataagacatggcactgtgaaaggtgtgatacg
tctctttcttgtgattatagatacttgctgcaaatgcagatacaagatcacactggcatg
acatgggttactgcttttcaggaaggcggcgaggacatcatgggtatgcccgcaaaagat
ttgttttctgtgaaatttgaagaaaaagatgaagaaaaatttaaagaaatcattagtaag
gttgtcttcacgaaatacatgttcaagttaaaagtaaaagaggagacattcaatgacgaa
gcacgtgttaagtcaactgtagtgaaagcagagaagattgttaactttgcatctgaatct
aaatctcttctggatttgattgataaacttaagtctgagaaagcagaaggtaccactatt
aactctgctatcaacacaactggaccggggagccttccaattggacaagctacgccacca
gtatataatcctataaacagcaacactaatactggtagagattatgggaccccagcaaat
caagtgagtcagtatggaaaccaacataacagttcttttgcttcatcaggtgctcctggt
tcatatatgtcatgcagcaattgtggaggctctgatcatagctctgcacaatgcctacat
cttagaaatccgcctgaacagactgctgggggggcctacgtcaacacggtgtctggatca
ggtggtgcttcgggtaagtgctataaatgccaacaacctggacattgggcgagcaactgt
cctagtatgagtgccgccaacagggtatctggtggatccggtggtgcttcaggtaattgc
tataaatgcaaccagcctggacattgggcgaacaactgtcccaatatgagtgcagcacct
caatctcatggaaacagtaatacagggcaaggaagatatggtattgctcaaaatcagccg
gatggaagatgttga

KEGG   Medicago truncatula (barrel medic): 11433064
Entry
11433064          CDS       T01716                                 
Name
(RefSeq) replication protein A 14 kDa subunit B
  KO
K10740  replication factor A3
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
mtr03440  Homologous recombination
mtr03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    11433064
   03420 Nucleotide excision repair
    11433064
   03430 Mismatch repair
    11433064
   03440 Homologous recombination
    11433064
   03460 Fanconi anemia pathway
    11433064
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    11433064
   03400 DNA repair and recombination proteins [BR:mtr03400]
    11433064
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    11433064
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     11433064
   MMR (mismatch excision repair)
     11433064
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     11433064
SSDB
Motif
Pfam: Rep_fac-A_3
Other DBs
NCBI-GeneID: 11433064
NCBI-ProteinID: XP_024625777
LinkDB
Position
7:complement(49533490..49535575)
AA seq 106 aa
MDPLSPAVIVNAELLPFYVGRRVRTVMQVVRSDVLAVIGKSPDEKQLIVKGSPPAPLTSF
VEVIGIVNSDKSIKAELWTNFGDEIDMLSYHKLCQLANGEFKHLFL
NT seq 321 nt   +upstreamnt  +downstreamnt
atggatccattaagccctgcagtcattgtcaatgcagaactgttgcccttttatgtcgga
agaagggttcgtacagtgatgcaggttgtgcgatctgacgttctagctgtcattggaaaa
tcaccagatgagaagcagttgattgtaaaaggatcaccccctgctcctcttacaagtttt
gtagaagttattggtattgttaacagtgacaagtccatcaaagctgagttatggaccaac
tttggtgatgaaattgatatgctcagctaccataagctatgtcagcttgcaaatggagaa
tttaaacacttgttcctgtga

KEGG   Medicago truncatula (barrel medic): 11446020
Entry
11446020          CDS       T01716                                 
Name
(RefSeq) replication protein A 32 kDa subunit B
  KO
K10739  replication factor A2
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
mtr03440  Homologous recombination
mtr03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    11446020
   03420 Nucleotide excision repair
    11446020
   03430 Mismatch repair
    11446020
   03440 Homologous recombination
    11446020
   03460 Fanconi anemia pathway
    11446020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    11446020
   03400 DNA repair and recombination proteins [BR:mtr03400]
    11446020
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    11446020
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     11446020
   MMR (mismatch excision repair)
     11446020
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     11446020
SSDB
Motif
Pfam: tRNA_anti-codon RPA_C RMI2
Other DBs
NCBI-GeneID: 11446020
NCBI-ProteinID: XP_003610102
UniProt: G7JVE0
LinkDB
Position
4:complement(61390036..61394272)
AA seq 278 aa
MHANQFDGNAAFAGGGFMPSQTNQGGESSLTPSKNRESQTLLPLTIKQINHALQSSDDRT
GLTIDGVGVNTVTLVGRVCNKSGQITEFKFVLDDGTGTIECTKWLHEPADAMAVESILNG
MYVRLYGQLKGFQGKTLSIFSLRPVTDFNEIASHFIECIYVHLYNSRLQYTQASIPSQQH
APNSIQITPTKGYQAQAIPPNQFSGQHNNGQKSVQELVLEYLALPTIRELEGGVFCGTIA
KQLGVSLDNDVIPALDLLSGEGVIYEGLPKHYKICSDG
NT seq 837 nt   +upstreamnt  +downstreamnt
atgcatgcgaatcagttcgacggcaacgccgccttcgccggcggcggtttcatgccttct
cagaccaatcaaggcggtgaatcctctctcactccctccaagaatcgcgaaagtcaaact
ttgcttccgctgacgatcaagcagatcaaccatgctcttcaatcaagtgatgatagaacc
ggtcttactattgacggtgttggcgttaacaccgttactcttgttggtagggtttgcaac
aaatctggacagattactgaatttaagtttgtacttgacgatggcaccggaacgattgag
tgtactaaatggcttcacgaacctgctgatgcaatggcagtggagagtatcttgaatgga
atgtatgtgcggttatatggacagttgaaaggttttcagggtaaaaccttaagtattttc
tctctcaggcccgttactgacttcaatgagatcgcctcccatttcattgagtgcatttat
gttcatctatacaattcgaggttacagtatacccaggctagcatccccagtcagcaacat
gctcccaattccatacaaatcactcccacaaaaggttatcaagctcaagccattccacca
aatcaattctccggtcagcataataatggtcagaagagtgttcaagagttggtgttagaa
tatttggctcttcccacaatcagggaattggaggggggagtcttttgtggaactattgca
aagcaacttggagtttctttggataatgacgtcatacctgctcttgatcttcttagtgga
gaaggtgtcatttatgaaggtctaccaaagcactataagatatgttccgacggttga

KEGG   Medicago truncatula (barrel medic): 25481878
Entry
25481878          CDS       T01716                                 
Name
(RefSeq) replication protein A 32 kDa subunit A
  KO
K10739  replication factor A2
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
mtr03440  Homologous recombination
mtr03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    25481878
   03420 Nucleotide excision repair
    25481878
   03430 Mismatch repair
    25481878
   03440 Homologous recombination
    25481878
   03460 Fanconi anemia pathway
    25481878
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    25481878
   03400 DNA repair and recombination proteins [BR:mtr03400]
    25481878
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    25481878
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     25481878
   MMR (mismatch excision repair)
     25481878
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     25481878
SSDB
Motif
Pfam: RPA_C tRNA_anti-codon RMI2 Rtt106_N
Other DBs
NCBI-GeneID: 25481878
NCBI-ProteinID: XP_013465733
UniProt: A0A072VCK7
LinkDB
Position
1:1624740..1628965
AA seq 272 aa
MFSNSQFDSSNAFSGGGFMSSQPNDSSPAPTKSRDSQGLIPVTVKQISEASHSGDEKSNF
SINGVDLTNVTLVGMVYEKTERNTDVNFVLDDGTGRIKCRRWVNDTFDSKEMEEVLNGMY
VRVYGSLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLRSKLKIEGITSALPSSNS
SMNTPVRNVSNGSQAPSSNPGYVQYSTDGLKDIDKLVLNYLEKHSHIETGVHVDELSREL
KLPLDKIMLLLKTPLEEGVIYSTIDDSHYKLA
NT seq 819 nt   +upstreamnt  +downstreamnt
atgttctccaattcccaattcgattcctccaacgccttctccggcggcggattcatgtcc
tcgcaacccaacgattcttctccggcaccgactaaaagtcgcgattctcagggtttgatt
ccggttacggtgaagcagataagtgaagcttctcattctggagatgaaaaatccaatttc
tcaattaacggtgtagatctgactaatgttacattggttggaatggtgtatgagaaaaca
gagaggaacacggatgttaattttgttttggatgatggaactggacggatcaaatgccga
agatgggtaaatgatacttttgactcaaaggaaatggaagaagtactgaatggcatgtat
gttcgtgtttatgggtccttgaaaagctttcaaggtgtaaggcaacttgtagccttctct
gtcaggcccgtgacaaattttgatgagatcccgtttcactttattgactgcatacataac
cacctccgcagcaaactaaagatagaaggaatcacttctgcacttccttcatcaaactcg
tctatgaatactcctgtcagaaatgtctcaaatggatctcaggcaccatcatcaaatccg
ggatatgtacaatatagcactgatggactcaaggatattgataaattggtccttaactat
ctggagaagcattcacacatagagacgggagtacatgttgatgagttatcaagagagctc
aagcttccattggacaagatcatgttgttgctgaagactcctttagaggaaggtgtgatt
tactccaccatagatgattcccactacaaacttgcttga

KEGG   Medicago truncatula (barrel medic): 25485573
Entry
25485573          CDS       T01716                                 
Name
(RefSeq) replication protein A 14 kDa subunit B
  KO
K10740  replication factor A3
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
mtr03440  Homologous recombination
mtr03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    25485573
   03420 Nucleotide excision repair
    25485573
   03430 Mismatch repair
    25485573
   03440 Homologous recombination
    25485573
   03460 Fanconi anemia pathway
    25485573
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    25485573
   03400 DNA repair and recombination proteins [BR:mtr03400]
    25485573
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    25485573
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     25485573
   MMR (mismatch excision repair)
     25485573
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     25485573
SSDB
Motif
Pfam: Rep_fac-A_3
Other DBs
NCBI-GeneID: 25485573
NCBI-ProteinID: XP_013470265
UniProt: A0A072VS98
LinkDB
Position
1:complement(54347556..54348973)
AA seq 107 aa
MDTSNPAAFVNAQVLPDFIGKKVRAVVQVNHSDGATITGKSTDESQIIVKGLSSQVPVMN
YVEVIGIAESNNSIRAEILTDFGATFDVNSYNQLCQLANGEFRSLFL
NT seq 324 nt   +upstreamnt  +downstreamnt
atggacacttcaaatcctgctgcatttgtcaatgcccaagttcttcccgatttcattgga
aagaaagtaagagcagtggttcaggtgaatcattctgatggtgcgacaatcacgggcaag
tccactgatgaatctcagataattgtaaaagggctatcatcacaagtccctgtcatgaat
tatgttgaggttattggcattgctgaaagtaacaactctattcgtgctgaaatattgact
gactttggtgccacatttgatgtcaactcttacaatcagttatgccaactagcaaatggt
gaattcagaagtctgtttctttag

KEGG   Medicago truncatula (barrel medic): 25485575
Entry
25485575          CDS       T01716                                 
Name
(RefSeq) replication protein A 14 kDa subunit B
  KO
K10740  replication factor A3
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
mtr03440  Homologous recombination
mtr03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    25485575
   03420 Nucleotide excision repair
    25485575
   03430 Mismatch repair
    25485575
   03440 Homologous recombination
    25485575
   03460 Fanconi anemia pathway
    25485575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    25485575
   03400 DNA repair and recombination proteins [BR:mtr03400]
    25485575
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    25485575
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     25485575
   MMR (mismatch excision repair)
     25485575
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     25485575
SSDB
Motif
Pfam: Rep_fac-A_3
Other DBs
NCBI-GeneID: 25485575
NCBI-ProteinID: XP_013470268
UniProt: A0A072VRK8
LinkDB
Position
1:complement(54358219..54359672)
AA seq 107 aa
MDTSNPAAFVNAQVLPNFIGKRVRAVVQVNHSDGATITGKSTDESQIIVKGLSSQVPVMN
YVEVIGIAESNNSIHAEILTDFGATFDVNSYNQLCQLANGECKSLFL
NT seq 324 nt   +upstreamnt  +downstreamnt
atggacacttcaaatcctgctgcatttgtcaatgcccaagttcttcccaatttcattgga
aaaagagtaagagcagtggttcaggtgaatcattctgatggtgcgacaatcacgggcaag
tccactgatgaatctcagataattgtaaaagggctatcatcacaagtccctgtcatgaat
tatgttgaggttattggcattgctgaaagtaacaactctatccatgctgaaatattgact
gactttggtgccacatttgatgtcaactcttacaatcagttatgccaactagcaaatggt
gaatgcaaaagtctgtttctttag

KEGG   Medicago truncatula (barrel medic): 25486480
Entry
25486480          CDS       T01716                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
  KO
K07466  replication factor A1
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
mtr03440  Homologous recombination
mtr03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    25486480
   03420 Nucleotide excision repair
    25486480
   03430 Mismatch repair
    25486480
   03440 Homologous recombination
    25486480
   03460 Fanconi anemia pathway
    25486480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mtr03000]
    25486480
   03032 DNA replication proteins [BR:mtr03032]
    25486480
   03400 DNA repair and recombination proteins [BR:mtr03400]
    25486480
Transcription factors [BR:mtr03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    25486480
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    25486480
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     25486480
   MMR (mismatch excision repair)
     25486480
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     25486480
SSDB
Motif
Pfam: Rep_fac-A_C Rep-A_N REPA_OB_2 tRNA_anti-codon DUF936
Other DBs
NCBI-GeneID: 25486480
NCBI-ProteinID: XP_013463513
UniProt: A0A072V862
LinkDB
Position
2:complement(18149829..18154285)
AA seq 627 aa
MAVNLTANAITAIIAGDVDAKPLLQVLDIATIVSTKNSQQQRYRLLLSDAVSSHHAMLAA
QLNDRVNTGRVKQGSIVQLLDYICTPLQNRKIIMVLNMETIIPDCEIIGNPKSFVDSELP
VQKALPDNTVAGSSRSINNLAAQNAGSNGQNFRPTVQPPYQPPPLYKGRGAVMKNEAPAR
VIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV
DRFYEAIEVGKVYLISKGSLKPAQKNFNHLKNEWEIMLDLNSTIELCPDEDGSIPRQQFS
FRPISDIEIVENNAILDVIGVVTSVNPSVPILRKNGMETLRRVLNLKDNSGKSVELTLWG
EFCNREGQKLQEMVDAGVFPVLAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQTLRNW
FDQVGKDSASLSISKDITHGGPKNEIRKTVSQIKDEGLGRSGKPDWITMRATVSFMRTDP
FCYTACPLMIGDRPCNKKVTKSGDTKWQCDRCNQEFEECDYRYLLQAQIQDHSGLTWVTA
FQEAGEEIMGYPAKDLYVLKYEQEDDEKFGDIIKSRLFNEFVFRLKIKEELYNEEQKVKI
TVVKADKVNYSAESRYMLDFISKFRRQ
NT seq 1884 nt   +upstreamnt  +downstreamnt
atggcggtgaatctcaccgcaaacgctattacggcgataatcgccggcgacgtcgacgca
aaaccgttacttcaagttctcgatattgcaacaatcgtaagtaccaaaaactctcaacaa
cagcgttaccgtcttcttctctccgacgccgtttcgtctcatcacgctatgctcgctgct
caactcaacgaccgagtcaataccggtcgagttaagcaaggttccatcgttcagcttctc
gattacatttgcactccgcttcagaatcgcaagattattatggtgcttaacatggaaacc
ataatacctgattgtgaaatcattgggaatccaaagtcatttgtggattcagagttacca
gttcagaaagcattgcctgataacactgtggctggttcgtccagaagtattaataatttg
gctgctcaaaatgctggtagtaatgggcagaatttcaggccaacagttcaacctccatac
caacctcctccgctttacaaaggtcgtggtgcagttatgaaaaatgaggcgccagcacgt
gtaatacctatagctgctttaaatccctatcagggtaggtgggccatcaaggcaagggtt
actgcaaaaggggatttgcgccgctataacaatgctcgtggagatggaaaagtcttctcg
tttgatctccttgattctgatggaggtgaaatacgggtaacttgctttaatgctgttgtt
gaccgtttctatgaagcaattgaggttggtaaagtttacttgatatcgaaaggtagcttg
aaacccgcacagaagaatttcaaccatttgaagaatgaatgggaaattatgctggattta
aattcaacgattgagctttgcccagatgaggatggttctatacctagacagcaattctcc
ttcagacctatcagtgacattgagattgttgagaataacgctatccttgatgttattggg
gttgtgacatctgtgaatccttcagttcccatcttaaggaagaatggaatggaaacactg
agaagggttttgaatctgaaggacaattctggcaagagtgttgagctaacactttggggt
gaattctgcaacagggaaggacaaaagcttcaagagatggtggatgctggggttttcccc
gttttagcagtaaaggctgggaaagttaatgaattcagtggaaagtctataggctctatt
tctactacacagcttttcataaatcccgatttccctgaggctcagaccttaagaaactgg
tttgatcaagttgggaaagattctgcttctctatccatttctaaggacatcactcatgga
ggacccaaaaatgagatacgcaaaactgtgtctcaaattaaagatgaaggtctagggcgt
tcaggcaagccagactggataacaatgagggcaaccgtatcattcatgaggaccgatccg
ttttgttacacagcttgccctctgatgattggagatcgaccgtgcaataagaaagtgacg
aagtcaggagacacaaaatggcagtgtgatagatgcaaccaggagtttgaggaatgtgat
tatcgttaccttctccaagctcaaatccaggatcattcaggattaacttgggtaactgct
ttccaggaagcaggggaggagattatggggtacccagcaaaagatttgtatgtgttgaag
tatgaacaggaggatgatgagaagtttggagatataatcaagagtagactcttcaatgag
tttgtgtttaggctgaaaatcaaagaggaattatataatgaggaacagaaggtgaagatt
acagtagttaaggcagataaggtgaattattctgcagagagtaggtacatgcttgatttt
atttccaagttccgtaggcagtga

KEGG   Medicago truncatula (barrel medic): 25493890
Entry
25493890          CDS       T01716                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
  KO
K07466  replication factor A1
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
mtr03440  Homologous recombination
mtr03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    25493890
   03420 Nucleotide excision repair
    25493890
   03430 Mismatch repair
    25493890
   03440 Homologous recombination
    25493890
   03460 Fanconi anemia pathway
    25493890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mtr03000]
    25493890
   03032 DNA replication proteins [BR:mtr03032]
    25493890
   03400 DNA repair and recombination proteins [BR:mtr03400]
    25493890
Transcription factors [BR:mtr03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    25493890
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    25493890
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     25493890
   MMR (mismatch excision repair)
     25493890
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     25493890
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF223
Other DBs
NCBI-GeneID: 25493890
NCBI-ProteinID: XP_013457996
UniProt: A0A072UQS0
LinkDB
Position
4:53583863..53587333
AA seq 618 aa
MAKSVSPNAISTLLSNPSPDSSSDLPDIVVQVLDLKSSGNRYSFSASDGKKKLKGIIPSN
QYSEVLSGKIQNLGLIRILDYTLNVIPNKSEKYLMLIKCEPVSPALETEIKSEQSGITLK
PKEDDVVKREGSTAGIVLKPKLDMVSKSAAQILHEQHANSAPARLAMTRRVRPLVSLNPY
MGGWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDKFAMG
KVYYISKGSLKVANKNFKTVVNDYEMTLNENSEVEEVANEAAFVPETKFNFVPIDQLGPY
VNKSELVDLVGVVKNVSSTMSIRRKSNNETVPKRDITIADETKKTVVVSLWGDLATNIGQ
ELLDMADKSPVVAIKSLKVGDFQGISLSAISRSLVLVNPEVPEAQKLRCWYDSEGKDAAM
AAISSGSISSSNSGSRSVYSDRVPLSYITSNLSLGAEKPAFFSIRGNISFIKADQAMWYR
ACKTCNKKVTEDMDAGYWCESCQKNDAECNFRYIMVAKVSDASGEAFVSTFNEEAEKIIG
CPAEELDNLKSQDGEENPYDMKLKKATWIPHLLRVSVSQNEYNGEKRQRITARAVVPIDF
AAESKFLLEDISKMVASH
NT seq 1857 nt   +upstreamnt  +downstreamnt
atggcgaaatccgtttccccaaacgccatctccaccctgctctcaaatccatctcctgat
tcttcatcagatctccctgacatcgttgttcaagttcttgatctcaaaagttccggcaac
agatactcgttttctgccagtgatggaaaaaagaaactaaaagggattattccttcaaat
cagtactcagaagttctatctgggaagattcagaaccttggtttaattcgaatccttgat
tacactctcaacgttattcccaacaaatccgagaagtatcttatgttgatcaagtgtgaa
ccagtttctcctgctcttgaaacggagatcaagagtgaacaatctggcatcaccttgaag
ccgaaggaagatgatgtagtcaagcgtgaaggttctactgctgggattgttttgaagccg
aagctggacatggtttcaaaatctgctgctcagatcttgcacgagcaacatgcaaattct
gctcctgcgagattggccatgacccgtagagtgcgtcctcttgtttcactgaatccttat
atgggtggttggacaattaaggtcagtgtcacaagcaaaggaactatgcgtacctataag
aatgctagaggagaaggttgtgtattcaatgttgaactgactgatgaagatggtactcag
attcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatggga
aaggtgtattacatttcaaagggatctttgaaagttgctaacaaaaatttcaaaactgtg
gtaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaa
gctgcttttgttccagagactaaattcaattttgtcccaattgatcagttgggtccttat
gtgaataagtctgagcttgttgatttagttggagttgttaagaatgtgtcttcaaccatg
agcatccgtagaaagagcaacaatgagactgttccaaagcgtgacattactattgccgat
gaaaccaagaagacagttgttgtgtctttgtggggtgatcttgcaactaacataggacaa
gagttacttgacatggctgataaatctccagtagttgcaatcaaatccctcaaggttggg
gattttcaaggtatttctttgtcagctataagcagaagtttagttctggtcaatccagaa
gtacctgaagctcagaagctcagatgctggtatgattctgaaggtaaggatgctgcaatg
gctgctataagctctggttcaatttcatcatctaacagtggaagtagatcagtttactct
gaccgtgttccactctcttacataacctctaacctctccttgggggctgagaagcctgca
ttctttagcatcagagggaatatcagtttcataaaggcagaccaggcaatgtggtatcgt
gcctgtaagacttgtaacaagaaagttactgaagacatggatgctgggtactggtgtgaa
agttgccagaaaaatgatgcagagtgcaacttcagatatattatggttgcaaaagtttct
gatgcaagtggtgaggctttcgtttctaccttcaatgaggaagctgagaagatcattggg
tgccctgctgaggagctagacaaccttaaatcacaggatggagaagagaatccttatgac
atgaaattgaagaaagctacatggattccacacctcttgcgggtcagtgtttctcagaat
gagtataatggtgagaagaggcaaaggataacagcacgggccgttgttcctattgacttt
gctgctgagtctaaattcctccttgaagacatatcaaagatggtagcctctcattaa

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