KEGG   Medicago truncatula (barrel medic): 11414029
Entry
11414029          CDS       T01716                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    11414029
   03410 Base excision repair
    11414029
   03420 Nucleotide excision repair
    11414029
   03430 Mismatch repair
    11414029
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    11414029
   03036 Chromosome and associated proteins [BR:mtr03036]
    11414029
   03400 DNA repair and recombination proteins [BR:mtr03400]
    11414029
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    11414029
  DNA Replication Termination Factors
   ELG1-RFC complex
    11414029
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    11414029
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     11414029
  Check point factors
   HRAD17(Rad24)-RFC complex
    11414029
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 RCF1-5-like_lid AAA_22 AAA_assoc_2 AAA_16 AAA_11 AAA_30 AAA_5 DNAX_ATPase_lid ATPase_2 AAA_14 RuvB_N AAA_7 DUF815 bpMoxR ResIII AAA_24 AAA_19 nSTAND3 AAA_3 AAA_25 SLFN-g3_helicase NB-ARC AAA_28 TIP49 AAA_18 MCM TniB Mg_chelatase VESA1_N
Other DBs
NCBI-GeneID: 11414029
NCBI-ProteinID: XP_003602039
UniProt: G7J4X7
LinkDB
Position
3:complement(43405997..43412977)
AA seq 355 aa
MAEETYAMDIDVTDKGKTVIAAGNPSFGGKASLWVEKYRPQSLDDVAAHRDIVDTIDRLT
TENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA
STQSLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQ
SRCTRFRFAPLDAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMA
SQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSESFKRIYDMKTRKGLALIDIVREVTM
FVFKINMPSAVRVQLVNDLADIEYRLSFGCNDKLQLGSVVASFTRARSAMVAAAA
NT seq 1068 nt   +upstreamnt  +downstreamnt
atggcggaggagacttatgctatggacatcgacgtcacagacaagggcaaaaccgtcatt
gccgccggtaacccttccttcggtggcaaagcttcgctatgggttgaaaagtatcgtcct
caatccctcgacgacgttgcagctcaccgcgacatcgttgacacaattgataggttgact
actgagaatagattaccccatctgctgttgtatggacctcctggaacgggtaaaacatcg
acgattcttgcggtggcgcgaaaattatacggtgctcagtatcataatatgattttggaa
ctcaatgcttcagatgatagaggaattgatgttgttagacagcagattcaagattttgcc
agcactcagagcttatcatttggcgtcaagccctctgtaaaactggtcttgttagatgaa
gcagatgccatgactaaggatgcccaatttgcattacgtagagtcatcgagaaatataca
aagagcactcggtttgcacttatctgtaatcatgtaaacaagattatcccagcactgcaa
tcaagatgcacccggtttcggtttgcccctcttgatgctgtccatgtcactgagagactg
aaacatgttatcaatgctgaaaggcttgatgttcaagacagtggcttatctgctcttgtt
cggcttagcaatggtgatatgagaaaggcactgaatattcttcagtcaacacatatggcc
tctcagcagattacagaagaagctgtttatctttgcactggaaatccgttgcccaaagac
attgagcaaatatcttactggcttctaaatgaacaatattcagaaagctttaaaagaata
tatgacatgaaaacaaggaaaggactggctctgattgatattgttagagaagtgacaatg
tttgtcttcaagattaatatgccttcagccgttcgagtgcagttggtgaatgatttggct
gacatagagtacagattaagttttgggtgcaacgataagcttcagcttggatcagttgtt
gcttcatttacacgtgctagatctgcaatggttgcagctgctgcataa

KEGG   Medicago truncatula (barrel medic): 11414806
Entry
11414806          CDS       T01716                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    11414806
   03410 Base excision repair
    11414806
   03420 Nucleotide excision repair
    11414806
   03430 Mismatch repair
    11414806
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    11414806
   03036 Chromosome and associated proteins [BR:mtr03036]
    11414806
   03400 DNA repair and recombination proteins [BR:mtr03400]
    11414806
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    11414806
  DNA Replication Termination Factors
   ELG1-RFC complex
    11414806
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    11414806
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     11414806
  Check point factors
   HRAD17(Rad24)-RFC complex
    11414806
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 AAA_16 RuvB_N ADK Mg_chelatase AAA_24 AAA_5 AAA_11 AAA_14 SLFN-g3_helicase ResIII AAA_2 AAA_assoc_2 nSTAND3 AAA_28 PhoH AAA_19 AAA_30 AAA_25 AAA_7 RNA_helicase AAA_18 ATPase_2 TIP49 Parvo_NS1 DUF815 Effector_1 NB-ARC IstB_IS21
Other DBs
NCBI-GeneID: 11414806
NCBI-ProteinID: XP_024633679
LinkDB
Position
3:complement(43605843..43610571)
AA seq 339 aa
MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIV
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMS
SRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIV
PAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARIS
KKLGEADKCLVDGADEYLQLLDVVSNTIQALCNMPEGFA
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccaatcattcagagcactcaaccatgggtcgagaaataccgtccaaagcaagtg
aaagacgtagctcaccaagaagaagtggttcgagtactcaccaacactctcgaaactgga
agctgcccacacatgctcttctatggtcctcccggcactggaaaaaccactactgccctc
gctatcgctcatcagcttttcggacctgaactctataaatctagggttttggaacttaat
gctagtgatgatcgtggtattaatgttgttcggactaagatcaaagatttcgctgctgtc
gctgtgggtaccaataagcctaagaatggttatccgtgtccaccgtataagatcattgtt
ctcgacgaggctgattcaatgacagaagatgctcagaatgcactgaggcgaacgatggaa
acttattctaaagttactaggttcttttttatatgcaactacattagcaggattatagaa
ccacttgcttcaaggtgtgcaaaattcaggttcaagccactgacagaagaaatcatgagc
agccgaatagtatacatctgcaaagaagaaggaatctaccttgatgctgagggtctttca
actttaagtaatatttctcaaggagatctccgtcgggctataacatacttgcagtctgct
gctcgcttatttggatcttccatttcttccaaggatctgatttctgtgtctgggattgtt
ccagcggaggttgttgaggcacttcttaaagcatgcagaagtggtaattttgatttagca
aacaaggaagtcaacaatttcattgcagaggggtatcctgtctctcagatgctaactcag
ttgtttgaggctattgttgaagaaaacgacatatcagatgagcagaaggcaaggatatcc
aagaagttgggtgaagcagataagtgcctagttgatggtgctgatgaatacttgcagctt
cttgatgtggtcagcaatacaatacaagctttatgtaacatgccagaaggatttgcttaa

KEGG   Medicago truncatula (barrel medic): 11429308
Entry
11429308          CDS       T01716                                 
Name
(RefSeq) uncharacterized protein LOC11429308
  KO
K10756  replication factor C subunit 3/5
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    11429308
   03410 Base excision repair
    11429308
   03420 Nucleotide excision repair
    11429308
   03430 Mismatch repair
    11429308
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    11429308
   03036 Chromosome and associated proteins [BR:mtr03036]
    11429308
   03400 DNA repair and recombination proteins [BR:mtr03400]
    11429308
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    11429308
  DNA Replication Termination Factors
   ELG1-RFC complex
    11429308
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    11429308
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     11429308
  Check point factors
   HRAD17(Rad24)-RFC complex
    11429308
SSDB
Motif
Pfam: RCF1-5-like_lid RFC_C CDC37_N DUF7293
Other DBs
NCBI-GeneID: 11429308
NCBI-ProteinID: XP_003604069
UniProt: G7J8L1
LinkDB
Position
3:58716581..58723918
AA seq 800 aa
MSSLQHRNFLEAPTRDGTSIIVMKCYWLNGRVRERKKERMKVPSPTRKQSVGDRHMISPT
RHNMSRSARRRKNSGHWWLSSISWMKKEVDSYDMTHHTHLSSDSPYYKGLTDQSLAIPHE
EYQEDDNNNISSSLRPILLSSSPHSSPYYKGLTDYSLVIDASWATPHPHPHHNSSLSCYH
DSSPYYRGLIALPVPTSPSSLFSLNINFNTTPTTQPPTHDFVVFLSPEDQSLMVTEPEAT
LEEAMVLIHPDIQGKPLRVNNPSSSQATLEKMDDGSDDVEGGKPLRVNYESETIPEKTIL
CDDVVLLVEEHKRKPLRERVTSNSETVLSQQENADKTDLGMEEEMELVMIEQEKPLRESR
ASQVGNENVLINTETTGLKEELRDFWLGGQKTASEQTVSMELPCEHKSMNTAVEGNMYEY
LWATKYQPKILADFICNRDKALQLKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFG
ADGVQVTEEYKDFNLKGEMVENLKLRVQKSLHHVEVNLSEAKGYEKNVIVELFKETYGKV
INSSLPCSPENCQAIILYEAEKLSLESVLYIKWLVEKYKGCNKLFFCCSDESRLQPIQSY
CTTVRLSSPSTQQIVKILEYIVQEEGIKLSHESIKSIVLRSKNNLRQAIRSLEATYRNKN
ALNDDDLVLTGWEDDILNIARNIITEQSPRQLYAIRKKLQSLMIHDVPPDFIYKSLVANL
TSLVDDSLCSGVTKLGKDYTKGGAIKFEGVKHYAQNKQGGSDEKNNKLTKKNAMNYLKVE
EFIAKFMSWYKNSCKSNDHV
NT seq 2403 nt   +upstreamnt  +downstreamnt
atgtcatcattgcagcataggaatttcttggaagctccaactagagacggcacaagtata
atagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaagagagaatg
aaagtacctagcccgactcggaagcaatctgttggagatcgtcacatgatatcgcctact
cgccacaatatgtcacgttccgcacggaggaggaagaacagtggtcattggtggttgtca
tcaatatcatggatgaagaaagaggttgactcatatgatatgactcatcatactcacctc
tcttctgatagtccctactacaagggtcttaccgatcaatctcttgctattcctcatgaa
gaataccaagaggatgacaacaacaatatctcttcatcactgcgacctatcctcctttca
tcatccccccacagtagtccttactacaaaggtcttaccgattattctcttgtcattgat
gcctcttgggccactcctcatccccacccccatcataactcatccctttcttgttatcac
gactcaagtccatactataggggtcttattgctcttcctgttcccacttccccctcctct
ctcttctccctcaacatcaatttcaataccacccccaccacccaaccaccaactcatgat
tttgttgtctttttaagtccagaagatcaatcactcatggtaacagaaccagaagcaact
ttggaggaggcgatggtgttgatccatcccgatatccaagggaagcctttgagggttaac
aatccgtcatcatcacaagcaactttggagaagatggacgacggtagtgacgatgttgaa
ggcgggaagcctttgagggttaattatgaatcagaaactattccagagaaaacaattttg
tgtgacgatgttgtgttgttggttgaagagcataagagaaagcctttgagggagagagta
acatcaaattcggagacagtattgtcacaacaagaaaatgctgacaaaacagatttgggt
atggaggaggagatggaattggtgatgattgaacaagagaagccattgagagagagtcgt
gcgtcacaagttgggaatgagaatgtactaataaatacagagacaacaggtttgaaagag
gaactcagagacttttggttgggtggtcaaaagactgcttctgaacaaacagtgtcaatg
gaattaccttgtgagcataagtcgatgaacacggctgtggaaggaaatatgtatgagtat
ctgtgggcaaccaaataccagcccaagatattggcagacttcatctgcaacagagataaa
gcacttcagctgaaagcattggttaaaggtgggtgtggctgtaatcattttatatttgaa
ggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggc
gctgacggagtgcaggtcacagaagaatataaagacttcaacttgaagggagaaatggtc
gaaaatctcaaactgcgtgtgcagaaatcactccatcatgttgaggtaaatctctcagaa
gcaaagggatatgaaaagaatgtgattgttgagttattcaaggaaacatatggtaaggtg
atcaatagttcactgccttgtagcccagaaaactgtcaagcaataattttgtatgaggcg
gagaagctatcgttagaatcggtgttgtatataaagtggctggtagaaaagtataaaggg
tgtaataagctgttcttttgttgctctgatgaatcaaggctacaaccaatccaatcatat
tgcaccacggtccgcctctcatcaccatcaacccaacagattgtcaagattttggaatat
attgtacaagaagaaggaataaaattatcacacgagtcaatcaagagtatagttttaagg
tccaaaaacaatctccgtcaagccattcgttcattggaggccacttaccgaaacaagaat
gccctcaacgacgatgatttagttttaactggatgggaggatgatattttgaatattgct
agaaatataatcacagagcagagtcctagacagttgtacgccattcgaaaaaagcttcaa
agtcttatgattcatgatgttcctcctgactttatttacaagtctttggttgcaaacttg
accagtctagttgatgactcgctatgctcaggggttaccaaacttggcaaggactacact
aaaggtggtgcaatcaaatttgaaggcgtgaagcattatgctcaaaacaaacaaggagga
tctgatgaaaagaacaataaactaacaaaaaagaatgcaatgaactacttaaaagttgaa
gaatttatagcaaaattcatgagctggtacaagaattcgtgtaaaagtaatgatcatgtg
taa

KEGG   Medicago truncatula (barrel medic): 120575764
Entry
120575764         CDS       T01716                                 
Name
(RefSeq) uncharacterized protein LOC120575764
  KO
K10756  replication factor C subunit 3/5
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120575764
   03410 Base excision repair
    120575764
   03420 Nucleotide excision repair
    120575764
   03430 Mismatch repair
    120575764
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    120575764
   03036 Chromosome and associated proteins [BR:mtr03036]
    120575764
   03400 DNA repair and recombination proteins [BR:mtr03400]
    120575764
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    120575764
  DNA Replication Termination Factors
   ELG1-RFC complex
    120575764
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    120575764
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     120575764
  Check point factors
   HRAD17(Rad24)-RFC complex
    120575764
SSDB
Motif
Pfam: AAA_16 YbeY TIP49 AAA_5
Other DBs
NCBI-GeneID: 120575764
NCBI-ProteinID: XP_039690561
LinkDB
Position
5:7989621..7991836
AA seq 547 aa
MEKTQLDNLFPLTPSAVFSTKKGRSGYEPSDTETEWQDTPRHERGRKNNMTLSPEETKAL
YLRNKSPMTLHKRHPSRFEFEVPSSPSITGSVLNQPRRRHLSKSPYRPRVAHDNHYDVDG
NDDDASLTNITGVNSRRNMSPLPRPDIGRTLSPYNRNREQRAPYNENRKASSGLLEMDRV
GTKSNYKRAVTAPRLRDQQQTVQNTARTLKQREKSPFKTGLVKEREINEMIAEVKLSKNP
TDDYSSALESTDSIQTGDLFFSRECNALQAKNSSMPKKVQQYEYFSPRQVITTINPITNP
CESGKHGMNMNMPRNYSSNVLLSRTSAATSIRKGSGTGKPSANSSVKSDASTKTTESMRK
FTSNRKKNQKDAWFACMMRTGNCRISRKSPERRPIDEASLIERAIIVESIPQLWADKHKP
ASLDGFICNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFLREIYGDACCNLSHD
LRHFPIQDKRTMKVSVPITSSSHHMEVNVNSEPNAKYALMGLIKEISNIYAITPEVSNVN
FKSDYKG
NT seq 1644 nt   +upstreamnt  +downstreamnt
atggagaagactcaactggataacctatttcctctaactccaagtgccgtattctctaca
aagaagggacgtagcggatatgaaccatcagacacagagacggagtggcaagacactcca
cgtcatgaacgaggaagaaagaacaacatgactttgagtccagaagaaacaaaagctttg
tatctaaggaacaaaagtcctatgacactccacaagagacacccttcaaggtttgaattt
gaagtcccatcatcaccttcaataacaggttcagttcttaaccaaccaagaagaagacat
ctcagtaaatcaccctataggccacgcgtagcacatgataatcattatgatgttgatggt
aatgatgatgatgcttcgttaacaaacataacaggtgtgaactcacgtagaaatatgagt
cctttgccaaggcctgacattggaagaacattgtctccttataacagaaaccgtgagcaa
agagcaccttataatgaaaataggaaagcaagttcagggcttctagaaatggatagagtg
ggtacaaaatcaaactacaagagagcagtgactgctccaagattgagagaccaacaacaa
acagtgcaaaacactgcgagaactctgaaacaaagggaaaaatctcctttcaaaacaggt
ttagttaaagaaagagaaatcaatgaaatgatagcagaggtgaaactatcaaaaaaccct
actgatgattattcatcagcactcgaaagtacagactcaattcaaacaggtgatcttttc
ttttctcgtgaatgcaatgccttgcaagcgaagaattcttcaatgccaaaaaaagttcaa
caatacgagtattttagccctagacaagtgatcaccaccattaatcccattaccaaccca
tgtgaaagtggtaaacacggtatgaatatgaatatgccaagaaactattcaagtaatgtg
ttgttgtctcgaacatcggcagccacatcaatcagaaagggaagtggaactgggaagcct
agtgctaactctagtgtgaaaagtgatgctagtacaaagacaaccgaaagcatgaggaaa
ttcacatccaacagaaaaaagaaccagaaagatgcatggtttgcttgtatgatgagaaca
ggaaactgtaggatttcaagaaaatcgcctgaacgcagacccattgatgaagcttcattg
atcgagagggcaataattgtggaaagcattccacaattatgggcagataaacataaacca
gcttcacttgatggcttcatttgcaacaaacaagaagctcaactactcaaggaattagtg
tcacagggctcttgtcctcatattttactcaaaggaccctctggttctgggaaaagagac
ctagcaatggcttttcttagagaaatatatggtgatgcatgttgtaatctgtcacatgat
ttacgacatttccctattcaggacaaaaggaccatgaaagtatcggttccaataacgtcc
agttctcatcatatggaggtcaatgtaaattcagaaccaaatgctaaatatgctttgatg
ggattaatcaaagaaattagcaatatatatgcaattacccctgaagtaagtaatgtgaat
ttcaagtcagattataaaggttag

KEGG   Medicago truncatula (barrel medic): 25492173
Entry
25492173          CDS       T01716                                 
Name
(RefSeq) replication factor C subunit 1 isoform X1
  KO
K10754  replication factor C subunit 1
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    25492173
   03410 Base excision repair
    25492173
   03420 Nucleotide excision repair
    25492173
   03430 Mismatch repair
    25492173
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    25492173
   03400 DNA repair and recombination proteins [BR:mtr03400]
    25492173
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    25492173
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     25492173
SSDB
Motif
Pfam: RFC1 BRCT AAA AAA_22 PTCB-BRCT AAA_19 RCF1-5-like_lid AAA_30 AAA_5 nSTAND3 RuvB_N Rad17 AAA_14 AAA_assoc_2 BRCT_2 Sigma54_activ_2 Zeta_toxin AAA_17 AAA_33 AAA_18 TsaE RNA_helicase AAA_16 NTPase_1 MS_TIM-barrel AAA_24 Bro-N DNAX_ATPase_lid
Other DBs
NCBI-GeneID: 25492173
NCBI-ProteinID: XP_013455696
UniProt: A0A072UJ61
LinkDB
Position
4:complement(26123066..26132840)
AA seq 988 aa
MSDIRKWFMKTHDKPNNAAAGNSSNKPKPPPAKPDPAKTVPAEGQASSGRKKTSKYFNTD
KSKAKDEVETQVLPAKRKTNEDDGDDSVLPTNQKKVAGSTPTKKLKSGSGRGIPQKSVDL
DESDEEDVKDAVTPIKSGGRGRGGRGASTPASGGRGRGGVRGTAQKSVAMEENDEDDEKD
VASAAKSGGRGRGGRGASAQPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCL
AGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDDDIGGRKSEKAKELGT
SFLTEDGLFDMIRASKPAKAPKQEECKKSVTKAVPVPSPSKVLPKAETKASLPSYSPSNQ
AKPKKAATAQSNLMWTEKHRPKNPKDIIGNQSLVAQLRTWLKGWHEQFSNTGGNKKGKKQ
NDPASKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNAN
SIKELVTNEALGRNMDRSKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICN
DRYSQKLKSLMNYCLLLSYRKPTKQQMAKKFMEVAKAEGLQVNEIALEELAERVNGDMRM
ALNQLQYMGLSMSVINYDDIRQRLLTNAKDEDISPFTAVDKLFGFNAGKMKMDERINLSM
SDPDLVPLLIQENYINYRPSSAGKDDNGLKRMNLIARAAESIATGDIVSVQIRRYRQWQL
SQTSSVASCILPASLLHGSREILEQGERNFNRFGGWLGKNSTMGKNMRLMDDLHVHILAS
RESSSGRDTIRLEYLTTLLKNLTEPLRVLPKAEAVEKVVEFMNTYSISQEDFDTIVELSK
FKGRPNPLDGIQPAVKSALTKAYKELSKTRTVRAADLITLPGIKKAPKKRIAAILEPADE
GVEQGDGGNTLDESEEENTSDVDESEGAATGEKLKSELQSLNSKGVQVQLELKGSGSSKK
VSGGRGKGASASAQKGAQTSKTPAKRKR
NT seq 2967 nt   +upstreamnt  +downstreamnt
atgagtgatataagaaaatggttcatgaaaacacacgataagcccaacaatgccgccgcc
ggtaactcctccaacaaacccaagcctcctccggctaaacccgacccggcaaaaacggta
cctgctgaaggtcaagcaagttcaggcagaaagaaaactagcaaatattttaatacagat
aagtcaaaggcgaaagatgaggtagaaacacaagtgctaccagctaaaagaaagactaat
gaagatgatggagatgactctgttcttcccactaatcaaaagaaggtagctggttccact
cctactaaaaaattgaagagtggatcaggtaggggaatcccccagaaatctgtagatttg
gacgaaagtgatgaagaggatgttaaagatgctgtgactcctattaaatctggtggaagg
ggtcgtggtggaagaggagcatcaacaccagcatctggtggaaggggccgagggggtgta
aggggaactgcccagaaatctgtagctatggaagaaaatgacgaagatgacgagaaagat
gttgcttctgctgccaaatctggtggaaggggtcggggtggaagaggagcctcagcacaa
ccatctggtggaaggggccgagggggtggtggtaggggtggattcatgaatttcggtgaa
agaaaagatcctccacacaagggagaaaaggaagtccctgaaggtgctcctaactgttta
gctggtttaacgtttgtaatcagtggaacactggacagtttggaacgagaagaagcggaa
gatttgatcaaacgccatggtggccgtgtcaccggatcagtcagcaagaaaacaaactat
ttgttatgtgacgatgatattgggggaagaaagtctgaaaaagctaaagagctaggaact
tcattcctcacagaagatggattgttcgacatgattcgggcatctaaacctgcaaaagct
cctaagcaagaggaatgcaagaaatctgtgactaaggctgttccagtgccatctccatca
aaagttctcccgaaagcagaaacaaaggcctctttgccttcatactcaccttccaaccaa
gccaagcctaagaaagctgctactgctcagtctaatttgatgtggacagagaaacatcga
cctaaaaatcccaaagatatcatagggaatcagtcattggttgcacagcttcgaacttgg
ttgaaaggttggcacgagcaattttctaacactggtggtaataaaaaaggaaaaaagcag
aatgaccctgcttctaaaaaggctgtcttgttaagtggaacccctggtataggcaaaaca
acttcagcaaagctggtgtgtcaggagcttggtttccaagccatagaggtaaatgctagt
gatagccgtggaaaagctgacagcaaaattgaaaaaggaattagtggaagcaatgcaaat
tctatcaaggaacttgtgaccaacgaggcccttggtcgtaatatggataggtcaaaacag
tccaaaactgtgctcattatggatgaggttgatgggatgtcagctggtgataggggtggt
gttgctgatcttattgctagcatcaagatatcaaaaattcctattatctgcatttgtaat
gaccgttacagtcagaaactgaagagcctaatgaactactgtttgcttcttagttaccgg
aagcctacaaagcaacagatggcaaagaagtttatggaggttgctaaggctgaagggctt
caagttaatgagattgctcttgaggaattagcagaaagagttaatggggatatgcgcatg
gcactaaaccagttacaatatatgggcctctccatgtcagttatcaactacgatgatatt
aggcagcggttacttaccaatgcgaaagatgaagacatttcaccattcacagctgttgat
aagctttttggttttaatgctggaaagatgaaaatggatgagaggattaatcttagcatg
agtgaccctgatcttgttcctctacttatccaggaaaattatattaattatagaccaagc
tcggccggtaaggatgacaatggtctaaagcgcatgaatctgattgcccgtgctgccgag
tctattgctactggagatatagtgagcgtacagattcgcagatatcgacagtggcagctc
tctcaaactagttctgttgcatcatgtatacttcctgcttcattgctacatgggagtagg
gaaatacttgaacagggagaacggaatttcaaccgatttggtgggtggctggggaagaac
tcgacaatgggcaaaaacatgaggcttatggatgacctgcatgttcacattcttgcatct
cgcgaatctagttcgggaagggatactattcgcctggaataccttactactcttcttaag
aacttgacagaacccctccgagttttgcctaaggctgaagctgttgagaaagttgtggaa
tttatgaacacgtattcaatcagtcaggaagattttgacactatagtagagttatcgaaa
ttcaagggtcgtcctaatccgctagatggcatacagcctgccgttaagtcagccttgaca
aaagcatacaaagagctaagcaaaactcggactgttagagctgcggatctaattactctt
cctggaataaaaaaggcacccaagaagcggattgctgctattttagaaccagctgatgaa
ggagtggaacagggtgatggtggcaacactttggatgagagtgaagaagagaacacctct
gatgtagatgagtcagaaggtgccgcaactggcgagaagctgaagtcagaacttcaaagt
ttgaattcaaagggcgtgcaagtacaattggaattgaagggatcgggaagctccaagaag
gtatctggtggtagaggtaaaggtgcttctgcatctgcgcagaagggtgctcaaacgtca
aagactcctgcaaaaagaaaaaggtga

KEGG   Medicago truncatula (barrel medic): 25493662
Entry
25493662          CDS       T01716                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    25493662
   03410 Base excision repair
    25493662
   03420 Nucleotide excision repair
    25493662
   03430 Mismatch repair
    25493662
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    25493662
   03036 Chromosome and associated proteins [BR:mtr03036]
    25493662
   03400 DNA repair and recombination proteins [BR:mtr03400]
    25493662
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    25493662
  DNA Replication Termination Factors
   ELG1-RFC complex
    25493662
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    25493662
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     25493662
  Check point factors
   HRAD17(Rad24)-RFC complex
    25493662
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 AAA_16 Rad17 Mg_chelatase Viral_helicase1 nSTAND3 RuvB_N AAA_11 AAA_5 AAA_24 AAA_28 AAA_19 RCF1-5-like_lid MeaB AAA_30 AAA_25 RNA_helicase AAA_18 AAA_3 AAA_assoc_2 ABC_tran DNAX_ATPase_lid bpMoxR IstB_IS21 KTI12 T2SSE NTPase_1 AAA_7 SLFN-g3_helicase DO-GTPase1
Other DBs
NCBI-GeneID: 25493662
NCBI-ProteinID: XP_013457682
UniProt: I3SIN4
LinkDB
Position
4:complement(50586320..50590778)
AA seq 333 aa
MASSSSSSNTASYDVPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
KTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
EADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGR
LMVVVQAEKVPYVPEGLEAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPL
HVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETG
FAHMRICDGVGSYLQMCGLLAKFALVRDTANAA
NT seq 1002 nt   +upstreamnt  +downstreamnt
atggcatcttcatcatcctcaagcaacaccgccagttacgacgtgccgtgggttgaaaag
taccgacccagcaaagtcgtcgacatcgtcggcaatgaagacgccgtctcccgtctccaa
gtcatcgctcgtgacggcaacatgcccaacctcattttatcaggtcctcctggaactggt
aaaaccactagtattctcgccctggcgcacgagcttctcggtcccaactacagagaagct
gttctcgaactcaatgcatcagatgatagaggaatagatgttgtgaggaacaaaatcaag
atgtttgctcaaaagaaagtaacacttcctccaggccgacacaaagttgttatacttgat
gaagctgacagcatgacatctggagcacaacaagctttgagaaggacaatggagatatat
tctaattctactcgtttcgcgcttgcttgcaatacatcttctaagattattgagccgatt
cagagtaggtgtgccattgtgcgattttcgcgattgtctgatcaagagatactcggtcgt
cttatggttgtagttcaagctgagaaggttccctatgttcctgaaggacttgaggccatc
attttcactgctgatggtgatatgaggcagggattgaacaacttgcaagcaacattcagt
gggttccagtttgttaaccaagcaaatgtttttaaggtttgtgaccagccgcatccactg
catgtgaagaatatggtgcgcaatgtgattgaagggaatttcgatgaggcttgttctggg
ctcaagcaattgtatgacttgggatattcccccacagatatcatcaccacactttttcgt
atcataaaaagttatgatatggcagagtacttgaaactggaattcatgaaggaaactgga
tttgctcatatgaggatttgcgacggagttggttcttatcttcagatgtgcggtctgttg
gctaagtttgctcttgttcgcgacactgctaacgctgcatga

KEGG   Medicago truncatula (barrel medic): 25495823
Entry
25495823          CDS       T01716                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    25495823
   03410 Base excision repair
    25495823
   03420 Nucleotide excision repair
    25495823
   03430 Mismatch repair
    25495823
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    25495823
   03036 Chromosome and associated proteins [BR:mtr03036]
    25495823
   03400 DNA repair and recombination proteins [BR:mtr03400]
    25495823
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    25495823
  DNA Replication Termination Factors
   ELG1-RFC complex
    25495823
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    25495823
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     25495823
  Check point factors
   HRAD17(Rad24)-RFC complex
    25495823
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 Sigma54_activ_2 RsgA_GTPase ABC_tran AAA_16 DUF815 AAA_29 AAA_22 AAA_5 nSTAND3 AAA_23 Mg_chelatase AAA_24 RuvB_N AAA_2 T2SSE nSTAND1
Other DBs
NCBI-GeneID: 25495823
NCBI-ProteinID: XP_013451525
UniProt: A0A072U8X4
LinkDB
Position
6:10067270..10073074
AA seq 354 aa
MLWVDKYRPKTLDNALVHNDTAQNLKKLVSEHDCPHLLFYGPSGSGKKTLIMALLRQMFG
PGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR
CLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSFAARIAEKSNRNLRRAILSFETCRVQQY
PFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPGIILKRLLYE
LLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtagacaagtatcgtcccaaaaccctagacaatgctctggttcacaacgac
accgctcaaaatctcaaaaaattggtttcggaacatgattgtccccatttgttgttctat
ggtccttcaggctctggcaagaaaaccctaatcatggctcttctccgtcaaatgtttgga
cctggtgccgaaaaggtgaaggtggagaatagggcatggaaagttgacgcagggagtaga
tctattgatctagagctgacgacattatcaagtgccaatcatattgaaatgactccgagc
gatgcaggctttcaggacagatacattgttcaagaaataatcaaagaaatggctaaaaat
agacccattgatactaaagggaagaaaggatttaaagtgctggtgcttaatgatgtggac
aaactctctagagaagctcaacattcacttcgcagaacgatggagaaatacagtgcttat
tgcagattaattttatgttgcaatagttcttcaagagtcacagaagccatccggtcccgt
tgtcttaatgtacgaataaatgcaccaagtgaagaacagattgttgaagttttacagttc
attggtaagaaagaagggctacaacttccttctagttttgctgctcgtatagcagagaaa
tcaaatcggaatttgaggagggccatattatcatttgagacttgccgtgtccaacagtat
cctttcactgacaaacaaacaattcctccaatggactgggaggaatatatttcagaaatt
gcatctgacataatgaaagaacagagcccaaaaaggttgtttcaagttcgaggaaagttg
tatgagcttctaatcaactgtattcctccagggatcattttgaagaggctactttatgag
cttttgaggaaactggatgctgaactgaagcacgaagtttgccattgggcagcatattat
gaacataggatgcgccttggacaaaaggccatttttcacatcgaagcatttgtggccaag
ttcatgagcatctacaaatccttcctcattgcaacatttggctga

KEGG   Medicago truncatula (barrel medic): 25497284
Entry
25497284          CDS       T01716                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    25497284
   03410 Base excision repair
    25497284
   03420 Nucleotide excision repair
    25497284
   03430 Mismatch repair
    25497284
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    25497284
   03036 Chromosome and associated proteins [BR:mtr03036]
    25497284
   03400 DNA repair and recombination proteins [BR:mtr03400]
    25497284
DNA replication proteins [BR:mtr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    25497284
  DNA Replication Termination Factors
   ELG1-RFC complex
    25497284
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    25497284
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     25497284
  Check point factors
   HRAD17(Rad24)-RFC complex
    25497284
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 Sigma54_activ_2 RsgA_GTPase DUF815 ABC_tran AAA_16 AAA_22 AAA_29 RuvB_N AAA_5 AAA_23 nSTAND3 AAA_24 TsaE AAA_2
Other DBs
NCBI-GeneID: 25497284
NCBI-ProteinID: XP_013452656
UniProt: A0A072UA77
LinkDB
Position
6:complement(33283638..33289908)
AA seq 354 aa
MLWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFG
PGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSR
CLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQY
PFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLTNCIPPEIILKRLLYE
LLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggttgacaagtaccgtcccaaaactcttgaccatgctatggttcacagcgac
atcgctcaaaatctcaagaaattggttactgaacatgattgccctcatttgttgttctat
ggcccatcaggcgctggcaagaaaacactcatcatggctcttctccgccaaatgtttgga
cccggtgctgagaaggtgaaggtggaaaatagggcatggaaagtggatgctggaagtaga
tctatagatttagagctgactacattatcaagtgcgaaccacatcgaaatgactccaagt
gatgcaggctttcaggacagatacattgttcaagaaataatcaaagaaatggctaagaat
agacccattgatactaaagggaagaaaggatttaaagtactagtgcttaatgatgttgac
aaactctctagagaagctcaacattctctccgcagaacaatggagaaatacagcgcttat
tgcagattagttctatgttgcaatagctcttcaagagtcacagaagcaatccgctcccgt
tgtcttaatgtgcgaattaatgcaccaagtgaagaacagattgttgaagttttacagttc
attggtaagaaagaagggctgcaacttccttctagtttggctgctcgcatagcagagaaa
tcaaatcggaatttaaggagggccatattgtcatttgagacttgtcgtgtccaacagtat
cctttcaccgacaagcaaacaattcccccaatggactgggaggaatatatttctgaaatt
gcatctgacataatgaaggaacagagcccaaaaaggttgtttcaagttcgaggaaagctg
tatgagctgctgaccaattgcattcctcccgagatcattttgaagagacttctttatgag
ctattgaggaaacttgatgcggaactgaagcatgaagtctgccattgggcagcatattat
gagcataggatgcgccttggacagaaggcaatttttcacattgaagcatttgtggctaag
tttatgagcgtctacaagtccttcctcatcgcaacattcggctga

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