KEGG   Medicago truncatula (barrel medic): 11415167
Entry
11415167          CDS       T01716                                 
Name
(RefSeq) pre-mRNA-splicing factor clf1
  KO
K12869  crooked neck
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    11415167
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mtr03041]
    11415167
   03036 Chromosome and associated proteins [BR:mtr03036]
    11415167
Spliceosome [BR:mtr03041]
 Complex B
  Other components
   Prp19-related factors
    11415167
 Complex C
    11415167
Chromosome and associated proteins [BR:mtr03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Other centrosome duplication proteins
     11415167
SSDB
Motif
Pfam: HAT_PRP39_C HAT_PRP39_N HAT_Syf1_CNRKL1_N HAT_Syf1_CNRKL1_C TPR_14 Suf NRDE-2 TPR_19 NCTSP_N Leg1
Other DBs
NCBI-GeneID: 11415167
NCBI-ProteinID: XP_003609598
UniProt: G7JJ45
LinkDB
Position
4:complement(57418554..57419825)
AA seq 423 aa
MSLSTLSYHTREDTEVNFPRPTTVNNKTDAPIQITTELILIEDKELQQIKLPEVDYLNHT
LLNYPCKIVAFEKEARENPFNYDSWLSYIRLEESVGDEEKTREVYERAISNVPPNQEKIS
WRSYIFLFIKYALYEELDAGDMERARDVYRRCFNLMAHKKISSAKLWLLAAQFEIRMLNF
NGARRILGYAIGIAPKHELFKKYIEMELELGNTDRCRNLYVKYLEWSAKKCNAWSKYAEE
LERSSSETERARAIFESAIARPEHELLWKAFLDFETAKIEFERTRVHYERIPNRKKQHLE
IWISYAEFEATATYKAGLEQKKQCIEHARRVFEEAVSYITSSAPDSREERAMLLVKWLNL
EAFSGELGDVSLVLPKLPKKRQKRLKVAAQDGSFRIEEFFDYRFPEETQATHLKKQKLSC
SVA
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgtctctctcaaccctgagttatcacactagagaagacacggaggtgaactttcctcga
ccaacaacggtgaacaacaaaaccgatgcaccaattcaaatcacaactgagctgattctt
atcgaagataaggaactccaacagattaaattacctgaagttgattacttgaaccacacg
ctattaaattacccatgcaagattgtggcatttgaaaaagaagcgagggaaaatcctttc
aactatgattcctggttaagctatatacgattggaagaaagtgtgggggatgaggaaaaa
actagggaggtttatgagagagctatatctaatgttcctccaaatcaggaaaagatttcc
tggcggagctatatttttctgttcattaagtatgcactctatgaagagcttgatgctgga
gatatggagcgagcaagagatgtgtacaggaggtgtttcaacctgatggctcacaagaag
atctcatctgcaaagttatggcttctagcagcacagtttgaaatacgtatgctgaatttc
aatggtgctcgtcgaatattaggttatgcaattggaatcgctcctaaacatgagctattt
aagaagtatattgaaatggaattggagcttggtaatacagatcgatgcaggaatttgtat
gtaaagtatctggagtggtcagctaaaaaatgcaatgcatggagcaagtatgcagaagag
ttggagagatcttcatctgagactgaacgagctagagcaatatttgagtctgcaattgct
cgaccagagcatgagttgttatggaaggcattccttgattttgagactgctaagattgaa
tttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggag
atatggataagctatgcagagtttgaagcaacagctacttataaggcgggtttagaacaa
aagaaacaatgcattgagcatgccagaagggtgtttgaggaagctgtgagttacatcaca
tcatcagctccagattcaagagaagaaagggcgatgcttttggtgaaatggctcaacttg
gaggctttctctggagagttgggtgatgttagcttagtcctgcctaagctgcccaagaag
cgacagaagagactaaaagtggctgcccaagatggttcttttagaattgaagaatttttc
gactatcgattccctgaggaaactcaggcaacccatctcaagaagcaaaaattgtcatgt
agtgtggcttga

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