Medicago truncatula (barrel medic): 25482432
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Entry
25482432 CDS
T01716
Name
(RefSeq) F-box protein SKP2A
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
25482432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mtr04121
]
25482432
Ubiquitin system [BR:
mtr04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
25482432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
F-box-like
F-box
LRR_At1g61320_AtMIF1
F-box_4
PRANC
Motif
Other DBs
NCBI-GeneID:
25482432
NCBI-ProteinID:
XP_013466439
UniProt:
A0A072VQT2
LinkDB
All DBs
Position
1:complement(10198125..10200671)
Genome browser
AA seq
353 aa
AA seq
DB search
MMITTTSCGGSENFVKEVKMMMTVREWKDIPVELLMQILSLLDDQMVITASHVCHGWRDS
ISFALTRLSLSWCRKNMNNLVLSLAPKFTKLQTLILRQDTPQLEDNAVEAVAQFCRDLQI
LDLSKSFKLTDRSLYAIALGCSDLTKLNISGCSSFSDKALSYLASLCRKLKILNLCGCVK
AVSDTALQAIGHHCNQLQSLNLGWCEQVSDVGVMSLAYGCPDLRTLDLCGCVLITDDSVI
ALADRCPHLKSLGLYYCKNITDRAMYSLAQSKVNNKMWGSVNEEDGLKTLNISQCTSLTP
SAVQAVCDSSPALHTCSGRHSLIISGCLNLTSVHCACCVRPHRAINAFPHSAH
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgatgattactactactagctgtggcggtagtgaaaattttgtgaaagaagtgaagatg
atgatgacagtgagagagtggaaggatattccagttgaacttttgatgcaaattttgtca
cttttggatgatcaaatggtgattacagcttctcatgtttgtcatggttggagagattcc
atttcttttgctctcactcgtttatcactctcatggtgtaggaagaacatgaataacttg
gtcctatctcttgctcctaagttcacaaaattgcaaactctaatccttcgtcaagacacg
ccacaactagaagacaatgctgtcgaggctgttgcacaattctgtcgtgacctgcagatc
ctggacctcagcaaaagtttcaaacttaccgatcgttctctgtatgcaatagcccttggt
tgttctgatcttacaaaactcaacataagtggttgttcatcctttagcgacaaagctctt
tcttacctagcaagtttatgcagaaagctgaaaattttgaatctatgtggttgtgttaaa
gctgtatcagatactgcattacaggcaattggacatcactgcaatcagttacagtctttg
aatcttggatggtgcgaacaagtcagcgatgttggagtgatgagtttagcatatggatgt
cctgatcttagaacacttgacttatgtggttgtgtccttataacagatgacagtgtaatt
gccttggcggataggtgtcctcatctaaagtcccttggactgtactactgcaaaaacata
acagacagagcaatgtactcattggcacaaagcaaagtgaataataagatgtggggatct
gtgaacgaagaggatggacttaagactttgaacattagccagtgtacatcgctcactcca
tctgctgttcaggctgtctgtgactcatcccctgcacttcacacctgctcaggaagacat
tcactcattatcagtggctgtcttaatcttacatctgtgcattgtgcttgttgtgtccgg
ccacaccgagctataaacgcttttcctcactcagctcattga
Medicago truncatula (barrel medic): 25489745
Help
Entry
25489745 CDS
T01716
Name
(RefSeq) F-box protein SKP2A
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
25489745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mtr04121
]
25489745
Ubiquitin system [BR:
mtr04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
25489745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_4
F-box-like
LRR_At5g56370
F-box
zf-H3C2
F-box_4
Motif
Other DBs
NCBI-GeneID:
25489745
NCBI-ProteinID:
XP_013461356
UniProt:
B7FJG1
LinkDB
All DBs
Position
3:44149142..44152577
Genome browser
AA seq
368 aa
AA seq
DB search
MVGKDNLKTEDLNLFFENLMMVAGGEKGGNMKVGVITEWKDIPVELLMQILSLVDDQTVI
RVSGVCRGWRDSIYFGLARLSLSWCNKNMNNLVLSLVPKFAKLQTLILRQDKPQLDDNVV
GTIANFCHDLQILDLSKSFKLTDRSLYAIAHGCRDLTKLNISGCSAFSDNALAYLAGFCR
KLKVLNLCGCVRAASDTALQAIGHYCNQLQSLNLGWCDKVGDVGVMSLAYGCPDLRTVDL
CGCVYITDDSVIALANGCPHLRSLGLYFCKNITDNAMYSLAQSKVKNRMWGSVKGGNDED
GLRTLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTEVHCACAGHAHRAM
NAFPHPAH
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggttgggaaggataatttaaagactgaggatttgaatttgttttttgagaatcttatg
atggttgctggtggtgagaaaggagggaacatgaaggttggtgtgatcactgaatggaag
gatattcctgttgagcttttgatgcagattctgtctcttgtggatgatcagactgtgatt
cgagtttctggtgtttgtcgtggttggagagattctatttactttggccttgctcgttta
tcactctcttggtgtaacaagaacatgaacaacttggtcctatctcttgttcccaagttt
gcaaaactgcaaactctaatccttcgtcaagataagccacaactggacgacaatgttgtt
ggcactattgcaaatttctgtcatgacctgcagattcttgacctcagcaaaagtttcaag
ctcactgatcgctcactgtacgctatcgctcatggttgccgcgatcttacaaaactaaat
atcagtggatgttcagcatttagtgacaatgctctggcctaccttgctggtttctgtaga
aaactgaaagttctaaatctctgtggatgtgttagagcagcttctgatactgcacttcag
gctattggacactactgcaatcagttgcagtctttgaaccttggatggtgtgacaaagtt
ggtgatgttggagtgatgagtctagcatatggttgtcctgatctaaggacagttgatttg
tgtggctgtgtctatataacagatgatagtgtgattgctttggcaaacggatgccctcac
ctgaggtcccttggactgtacttctgcaagaacataacagacaatgcaatgtattcattg
gcacaaagcaaagtgaagaacaggatgtggggatctgtgaaaggaggaaatgatgaagat
ggactaaggacattgaacatcagccagtgcacttcactcactccttcagctgttcaggcg
gtttgtgactcatctcctgctctccacacatgctcagggaggcattcactcatcatgagt
ggctgtctcaatttgaccgaagtccattgtgcgtgtgctggtcatgcacaccgtgcaatg
aacgctttcccccatcctgctcattaa
DBGET
integrated database retrieval system