Medicago truncatula (barrel medic): 25485548
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Entry
25485548 CDS
T01716
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
25485548
Enzymes [BR:
mtr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
25485548
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
25485548
NCBI-ProteinID:
XP_013470238
UniProt:
A0A072VRH1
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Position
1:complement(54109856..54116447)
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AA seq
496 aa
AA seq
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MLPMSCILLMSLLCSFLPQIKAFSNLTLPHQHPYPEAVVHELHQKINVSFSRRELLSKDQ
GACLTGNPVDDCWRCDPNWSANRQKLAECGIGFGRAAMGGKGGQIYIVTDSSDNDPANPV
PGTLRHAVIQDEPLWIIFSSSMTINLRHELIFNSYKTVDGRGANVQITGHGCITLQYISN
VIIHNIHVHHCRPSGNTNIRASPTHVGFRGISDGDGISIFGSRNIWIDHCSLSYCTDGLI
DAIMGSTAITISNNHFGHHDEVMLLGHNDKYTPDRGMQVTIAFNHFGEGLVQRMPRCRLG
YIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDANAKEVTKRVDTDDKEWSGWNWR
TEGDIMVNGAFFVPSGVGMSAQYAEASSVQPKSVEQINQLTMYSGVFGDPRDNGDIYPGF
NGGGTTTGANSKGYNGNGGSSNDDGDFFGMIFKGTSSQAAPLVPYSSIVFVSTFLSLLII
FNLDIITNYDILLSLL
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctatgagctgcattcttttaatgtccctcttgtgttctttcttaccccaaatc
aaagctttctccaacctcaccttaccccaccaacatccttaccctgaggctgtggttcac
gaacttcatcagaaaatcaatgtgtcattttcaagaagggaactcctctcaaaagatcaa
ggtgcttgtttaactggaaacccggtagacgattgctggcgatgcgacccaaactggtcc
gcaaaccgtcagaaattagcggaatgcggaattggtttcggtcgcgccgccatgggaggt
aaaggaggtcagatctacatagtaacagattcctccgacaacgacccagcaaatccagtt
ccaggaacactccgtcacgccgtgattcaagacgaaccactctggataatcttctcctct
tccatgacaataaacctccgtcacgaactcatcttcaattcttacaaaaccgtcgacggt
cgcggcgcaaatgttcaaatcaccggccacggttgcatcacactccaatacatctcaaac
gtaataatccacaatatccatgttcatcactgtagaccctcggggaatactaacatacgt
gcgagtccaacgcatgtaggattcagaggcatatcggacggtgacggaatatcaatcttc
ggttcacgtaacatctggatcgaccattgctcgttatcttattgcaccgacggtttaata
gatgctataatggggtccactgcaataacaatttcgaataatcattttggtcatcacgat
gaagttatgcttttaggtcataatgataaatacactccagatagaggaatgcaagtaaca
atagcgtttaatcactttggtgaaggacttgttcaaagaatgccacgttgtagacttggt
tatattcatgttgttaacaatgattttacacagtgggaaatgtatgctatcggaggtagt
gctaatcctactattaacagtcagggtaaccgttacacagctccttccgatgcaaatgct
aaagaggtgacaaagcgcgtggatacagatgataaagaatggagtggttggaattggagg
acggagggggatataatggtaaatggagcgttctttgtaccgtcaggggtggggatgagt
gctcagtatgcggaggcgtcaagtgtacagccaaaatccgtggagcaaattaaccagctt
acaatgtactctggtgtattcggtgatcccagggataatggggatatatatcccgggttc
aacggtggtgggaccacgacaggagccaacagcaagggttacaatgggaatggggggtcc
agcaatgacgatggggacttctttggtatgatattcaaaggtaccagcagccaagcagca
ccgctagtaccctactcatctattgtatttgtttcaacttttttgtctcttttaattatt
ttcaatttggacattatcaccaactatgatattttattatcattactatga
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