Medicago truncatula (barrel medic): 25494462
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Entry
25494462 CDS
T01716
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X2
KO
K12600
superkiller protein 3
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25494462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25494462
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
25494462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_16
TPR_8
TPR_14
TPR_19
TPR_9
TPR_17
TPR_12
TPR_7
ARM_TT21_C
BTAD
TPR_10
TPR_20
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
25494462
NCBI-ProteinID:
XP_013453274
UniProt:
A0A072UCY8
LinkDB
All DBs
Position
5:69819..85052
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AA seq
1178 aa
AA seq
DB search
MDSETQQHTDEEEEHLFRRLQDSPDDASLQFDIGLFLWNKDSKEKAAQHFILSAKLNPNN
GDSFKYLGHYYARVSHDTQRAIKCYQRAVTINPHDSDSGEPLCDLLDQAGKDTLQLSLCL
QASQTSPRAFWAFRRLGFLLVHQNKWSEAVQSLQHAIRGHPTCADLWEALGLAYQRLGRF
TAAVKSYGRAIELDNQMVFALVESGNISLTLGQFKKGVEQFQQALEILPDCVPAQYGLAL
GLLSLAKDCINLGAYQWGASLLEEASEVARKSAHSFRNISCIWKLHADIQLAYARCNPWI
EEVQELESNKEALSASIISWRKTCFLAARHARFSYQRALHLSPWQANIYSDIAVTSDLIT
SLSQNYKQDLSARQLGEKMSIGALVLEGDNYEFWVALGCLSDHNALNQHALIRGLQLNVS
LAVAWGYLGKLYFKAGEKQLARQVFDRARSIDPGLALPWASMSAESCVSREPAPDEAFES
CSRAVQIMPLAEFQIGLTKLALLSGHLSSSQVFGAIQQAVQHSPHYPESHNLHGLVCEAR
KDYKSAATFYRLARHAFSIGSESNQNSHIRDISINLARSLSKAGNAADALQECENLKKEG
VLDEEGLHVYAFSLWQHGQNDLALSVAGSLAASLSSMKKASVAASICFISRLVYFICGLD
AVITSIAKMPKELFQSSKVSFVMSAINALDEQNRLGLVVSSTRCFLKYQEEISRMHFLIA
LGKLVKNESDGCLDIKSGVAYLRKALHMFPNCNLMRNLLGYLLLYCEELNSYHVATRCCK
LDRPDMSDQEGLKSAYDIHGAGAVACYATENNNPKFTFPTCSKKCSSQPRAIKYLQKYIH
QKPWSHDARYLLVLNYLQKAREQRFPHHLCSILNRLIQTALSNELYSETEIRHQYRHFQL
LLCASEISLQCGNYMSCITDAKKASQLVLPDDYLFFAHLLLCRLYALKGDRLNFRKEYAK
CLELRTDCHIGWICLKLMECQYELEIDSNAIDLNFEECIKRDENSWNVWMAAYNLARAMN
LMQKRDLVSAEEFVAQACSLAGFESCLFLCHGAICMELVRQHNSPHFLSRAINSLTKVHE
LSLIPLPFASILLAQAEGSLGSKERWDRNLRLEWYNWSSEMRPAEVYFQMHLVARQLKVG
PSSISRESSQSPERWVIRAIHMNPSCMRYWRVLQKLME
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggactccgaaactcagcaacatacagatgaagaagaagaacatctgttccgacgcttg
caggattccccagacgacgcctctctacagtttgatattggcttattcttatggaataaa
gattccaaggaaaaagccgctcaacattttattctatccgccaaattgaaccctaataat
ggagattctttcaaatatctcggccattattatgcacgcgtttcccatgatactcaaaga
gccattaagtgttatcagcgagccgttactatcaaccctcatgattctgactctggggaa
cctctctgcgatctacttgaccaagctggaaaggacactttgcagctttcactatgcctt
caagcttctcaaacctcgcccagggctttctgggccttccgcagattgggtttcctcctc
gttcatcaaaacaaatggtctgaagctgttcaaagccttcaacatgccatacgaggccat
cctacttgtgctgatttgtgggaagctttgggccttgcttatcaacggctgggaaggttt
actgcagctgttaagtcttatggtcgtgcaatcgaattggataatcagatggtctttgct
ttggttgaaagtggaaatatctcgttgacacttggtcagtttaaaaagggggttgaacaa
tttcaacaagctttggagattttgccagattgcgtgcctgcacaatatggacttgctttg
gggctgcttagtttggcaaaagattgcattaacttgggagcatatcagtggggcgcttca
ttgttagaggaagcgtcggaggttgccagaaagagtgctcattctttcaggaatatctcg
tgtatttggaaactacatgcggatattcagcttgcatatgcaagatgtaatccttggatt
gaggaggtccaagaattggaatctaataaggaagccctcagtgcttctattatttcatgg
aggaagacctgctttttggctgcaagacatgctaggttttcgtaccaacgagcattacac
ttgtctccatggcaggcaaacatttatagtgacattgcagtaacttcagatcttattacc
tcattgagccaaaattacaaacaagacttaagtgcacggcagctaggagaaaagatgtct
attggagccttggtacttgagggcgacaattatgagttctgggtggcattggggtgtttg
tctgatcataatgcactaaatcagcatgctttgatcagaggactgcaattaaatgtgtct
ctagctgttgcttggggatatcttgggaagttgtactttaaagcgggcgaaaagcaattg
gcaaggcaagtgtttgaccgtgcgcggagtatcgatcctggccttgcattgccatgggca
agcatgtcagccgagtcttgcgtgagcagggagcctgcaccagatgaggcgtttgaaagc
tgttcccgagccgtgcagataatgcccttagctgaattccaaattgggctaactaagctt
gctttgctgagtggccatctttcatcgtcacaggtttttggagctattcagcaggctgtt
cagcattcccctcactatcctgaatcccataacttacatggactggtatgtgaggctcga
aaagattacaagtctgctgctacgttttataggttagcacgacatgcatttagcatcggt
tcagagagtaatcaaaactcacatatcagggatatttctatcaatttggctagatcactt
tccaaggcagggaatgctgctgatgctttgcaggaatgtgaaaatttgaagaaagaaggg
gtgcttgatgaagaaggtttgcatgtgtatgctttctcgttatggcaacatggtcagaat
gatttggctctctctgtagctgggagtcttgctgcaagtctttcttctatgaaaaaagca
tctgtggcggcatccatttgtttcatcagtagattagtgtacttcatatgtggactggat
gccgtcatcactagcattgccaagatgccaaaggagctatttcagagttcaaaagttagt
tttgttatgtcagctatcaatgctcttgatgaacaaaatcgtctcggattggttgtctca
agtactcgatgttttctcaaatatcaagaagaaatttctaggatgcactttttaatagcg
cttgggaaattggtgaaaaatgaatctgatggctgccttgacattaaaagcggagttgca
tacctcaggaaagcactgcacatgtttcctaactgtaatttgatgaggaatcttctggga
tatctcttgctatattgtgaagagctaaacagttatcatgtggcaactaggtgttgtaaa
ctagaccgtcctgatatgtctgatcaagaaggtttaaaatcagcttatgatattcatggc
gctggagcagttgcatgctatgccactgagaacaataatccaaagtttacttttccaact
tgttcaaagaagtgttctagtcaaccacgagccatcaaatacctgcagaaatacattcat
cagaaaccatggagtcatgatgcccgctacttacttgttcttaactatcttcagaaggca
cgtgaacagagatttcctcatcatctatgtagcatactaaatcgtctaattcaaactgct
ctttcaaatgaattgtatagcgagacagaaatacgtcatcaatataggcacttccaactt
ctactttgtgcttctgagatcagtttacaatgtgggaattacatgagctgtatcactgat
gccaaaaaagcttctcaactagtgcttcctgatgattatttattctttgcacatctacta
ttgtgccgtttgtatgccctgaaaggcgatcgtctaaattttcggaaagagtatgcaaag
tgtttggagctcaggacagattgccatattggttggatctgtctcaaacttatggaatgc
caatatgaactggaaatagattcaaatgccatagacttgaacttcgaagaatgcattaaa
agggacgaaaattcatggaatgtgtggatggctgcatataacctagcgagagcaatgaat
ttgatgcaaaaaagggatttagtctcagccgaagagttcgtggcacaggcttgttcgttg
gcaggttttgaaagctgcctctttttatgtcatggtgcaatctgtatggagcttgtcagg
cagcacaatagtcctcacttcctatcacgggctatcaatagccttaccaaagttcatgag
ctttcactgattcccttaccttttgcctccatattgttggctcaagccgaaggaagcctc
ggttctaaggagagatgggacagaaaccttcgccttgaatggtacaattggtcatcagaa
atgaggcctgcagaggtttactttcaaatgcatttggttgcacgacagttgaaagttggg
ccaagctctatctctagggagtcctctcaaagtcctgagagatgggttattcgggcaata
cacatgaatccttcttgcatgcgatattggagggttttacagaagctaatggaataa
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