Micromonospora tulbaghiae: CSH63_29805
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Entry
CSH63_29805 CDS
T05651
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mtua
Micromonospora tulbaghiae
Pathway
mtua03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mtua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CSH63_29805 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtua03021
]
CSH63_29805 (rpoC)
03400 DNA repair and recombination proteins [BR:
mtua03400
]
CSH63_29805 (rpoC)
Enzymes [BR:
mtua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CSH63_29805 (rpoC)
Transcription machinery [BR:
mtua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CSH63_29805 (rpoC)
DNA repair and recombination proteins [BR:
mtua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CSH63_29805 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AYF31568
UniProt:
A0A386WVP6
LinkDB
All DBs
Position
6375978..6379865
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDAEARHRDLSTIENEILAEKRQAENSRDSEIEKRAAKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL
YRELRDRFGEYFTGSMGAEAIKALVQNMDLEAEAENLRETIRSGKGQRKIRALKRLKVVA
AFQNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTPGGKGEGR
AFSSDAEARMAYDNGELHLQAPVRIRLRDVVGVDNGAGAEPWTPAEGWTEGEPVTVETTL
GRVLFNETLPPGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSG
VTIGMEDVIAPPRKREILERYEKEADRIDKQYQRGLMTAEERRGELIEIWTKATNEVAKE
MDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKASYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQIGERIDGK
LVVHEHAETSVHARTLADDIKGPDGTVVAHRGQDINSILVDAIVAAGTETVRVRSVLTCE
SKLGVCGACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVQEIFEARVPKGKAPIADTPGRIRIEDGERSRKIVVIPDDGSDEIVYDKISKRVRLRA
HDGDHVEVGEKLTEGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEIIIR
QMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVGEGGEPAAGRPVLMGITKASLATDS
WLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLIPAGTGISKYRNVRVEPTEEAK
AKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcgcatcggcctcgccaccgctgacgacatc
cgtcagtggtcccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgcagcgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgctccaaggttcgccgggagcggatgggtcacatcgagctggccgctccg
gtgacccacatctggtacttcaagggcgtgccgagccggctgggctacctgctggacctc
gccccgaaggatctcgaaaagatcatctacttcgcctcgtacgtcgtgacgagcgtggac
gccgaagcgcgtcaccgcgacctctcgaccatcgagaacgagatcctggccgagaagcgg
caggccgagaacagccgcgactcggagatcgagaagcgggccgccaagctggaggccgac
ctggccgagctggaggccgagggcgcgaaggcggacgtccggcgcaaggtcaaggagggc
ggagagcgcgagatgcgccagatccgcgaccgggcccagcgcgagatcgaccgcctcgac
gaggtcctcgacaccttccgcaagctggagccgaagcagctggtcaccgacgagctgctc
taccgcgagctgcgcgaccgcttcggtgagtacttcaccggcagcatgggcgccgaggcg
atcaaggccctggtccagaacatggacctggaggccgaggcggagaacctccgcgagacc
atccgctccggcaagggtcagcggaagatccgggcgctcaagcggctcaaggtcgtcgcg
gcgttccagaacacccgcaactcgccgctcggcatggtgctggactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctcggacctg
aacgacctgtaccggcgtgtgatcaaccggaacaaccgcctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgtcgcggtcgtccggtcaccggcccgggtaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgaagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcggcagcgg
ccggtcgtgtgggacgtgctggaagaggtcatcggcgagcacccggttctgctgaaccgc
gcgccgaccctgcaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgccgacttcgacggtgaccag
atggcggtccacgtgccgctgtccgccgaggcccaggccgaggcgcggatcctgatgctg
tcgtcgaacaacatcctcaagccggccgacggcaagccggtcaccatgccgacccaggac
atggtcatcggtctgtaccacctcacccacctcactccggggggcaagggcgagggccgg
gcgttcagctcggacgccgaggcgcggatggcgtacgacaacggtgagctgcacctgcag
gcaccggtccggatccggctgcgcgacgtcgtcggtgtggacaacggcgccggcgccgag
ccctggacccccgccgaggggtggaccgagggcgagccggtgacggtggagaccacgctg
ggccgggtcctgttcaacgagacgctgcccccgggctaccgcttcgtgaactacgagatc
cgcaagggccagctctccgcgatcgtcaacgacctcgccgagcgcttcccgaaggtggcc
ctggccgccaccctggacgggctcaaggaggccggtttccactgggccacctggtccggc
gtcaccatcggcatggaggacgtcatcgctccgccgcgcaagcgggagatcctggagcgg
tacgagaaggaagccgaccggatcgacaagcagtaccagcgtggtctgatgaccgccgag
gagcgccgcggcgagctcatcgagatctggaccaaggcgaccaacgaggtcgccaaggag
atggacaccgcgctgccgcaggagaacccgctgtggaagatgatcaactcgggtgcccgc
ggtaacctgctccagctccggcagatcgcggcgatccgtggtctggtggccaacccgaag
ggcgagatcatcccgcggccgatcaaggcctcgtaccgggagggtctgtccgtgctggag
tacttcatctccacgcacggtgcccgtaagggtctcgcggacaccgccctgcgtaccgcc
gactcgggttacctgacccggcgtctggtggacgtctcgcaggacgtcatcatccgcgag
gaggactgcggcaccgaccgtgccatcccgatgcagatcggggagcggatcgacggcaag
ctggtcgtgcacgagcacgccgagaccagcgtgcacgcccggacgctcgccgacgacatc
aagggtccggacggcaccgtggtggcccaccgtggccaggacatcaactcgatcctggtg
gacgcgatcgtcgccgccgggaccgagacggtgcgggtgcgcagcgtgctcacctgcgag
tcgaagctgggcgtctgcggtgcgtgctacggccgttcgctgccgaccggcaagaccgtg
gacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgagccgggtacgcag
ctgacgatgcgtaccttccacaccggtggtgtcgcgggtgaggacatcacccagggtctg
ccccgtgtccaggagatcttcgaggcccgggtgccgaagggtaaggcgcccatcgccgac
acccccggtcgcatccggatcgaggacggcgagcggtcccgcaagatcgtggtcatcccg
gacgacggcagcgacgagatcgtctacgacaagatctcgaagcgggtccggctccgggcg
cacgacggcgaccacgtcgaggtcggcgagaagctcaccgagggcaccatcgacccgcac
gagctgctgcgcatcctcggcccgcgcgcggtccaggtccacctgacccaggaggtccag
gaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcatccgc
cagatgctcaagcgggtgacggtcatcgactccggctcgaccgagttcctgccgggtgtg
ctggtcgaccgggcgctgttcgagtcggagaaccgccggctcgtcggcgagggtggcgag
cccgccgccggtcgcccggtgctgatgggtatcaccaaggcctcgctggccactgactcc
tggctgtcggcggcctccttccaggagaccacccgggtgctgacggacgcggcgatccac
gcccgcagcgactcgctgatcggcctcaaggagaacgtgatcatcggtaagctcatcccg
gccggtacgggcatcagcaagtaccgcaacgtccgggtcgagccgaccgaggaggcgaag
gccaaggtctactcgatgaccggctacccggagaccgactacggcttcgggccggccagc
ggccaggcggttccgctggacgacttcgacttcgggtcgtaccgctaa
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