Methylocella tundrae: MTUNDRAET4_1802
Help
Entry
MTUNDRAET4_1802 CDS
T05970
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mtun
Methylocella tundrae
Pathway
mtun03030
DNA replication
mtun03410
Base excision repair
mtun03420
Nucleotide excision repair
mtun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MTUNDRAET4_1802 (ligA)
03410 Base excision repair
MTUNDRAET4_1802 (ligA)
03420 Nucleotide excision repair
MTUNDRAET4_1802 (ligA)
03430 Mismatch repair
MTUNDRAET4_1802 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtun03032
]
MTUNDRAET4_1802 (ligA)
03400 DNA repair and recombination proteins [BR:
mtun03400
]
MTUNDRAET4_1802 (ligA)
Enzymes [BR:
mtun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MTUNDRAET4_1802 (ligA)
DNA replication proteins [BR:
mtun03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MTUNDRAET4_1802 (ligA)
DNA repair and recombination proteins [BR:
mtun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MTUNDRAET4_1802 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MTUNDRAET4_1802 (ligA)
MMR (mismatch excision repair)
DNA ligase
MTUNDRAET4_1802 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MTUNDRAET4_1802 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
VFU08695
UniProt:
A0A4U8YZM5
LinkDB
All DBs
Position
1:complement(1617946..1620048)
Genome browser
AA seq
700 aa
AA seq
DB search
MKQPKPVDTLTLGQARREHARLEAEISAHDRRYYTEDAPTVSDAEYDALRLRYGALEAAF
PELSTPASLTKKVGAAPSEKFAKVRHKVPMLSLGNVFSDEDVAEFAARVRRFLGLAPEAK
LAITAEPKIDGLSCSLRFEHGELVQAATRGDGFEGEDVTANVRTIGEIPAKLRGEPPGVL
EVRGEVYMTHGDFAAMNARQIEAGKPVFANPRNAAAGSLRQLDPSVTAGRPLHFFAYAWG
EASSLPAETQMGMVAAFKSFGLPVNPLMTLCHSAQELLEQYYRIEAMRASLGYDIDGVVY
KVDSLALQERLGFVSRSPRWAIAHKFPAEQATTVLRDIEIQVGRTGALTPVARLDPVTVG
GVVVSNATLHNEDEIARKDIRIGDTVRIQRAGDVIPQVLGPVLEKRPQGAKPYVFPDHCP
VCGSAAIREIDEKTGVADVVRRCTGGLICSAQAVERLKHFASRNALDIEGLGDKQIEQFY
HDGLIKTPADIFTLEVRDKASLKKLKDREGYGETSTRNLFRAIEARREPPLNRFIYALGI
RHVGETNARRLARHFGSFAALRETGRAAAEGSEARAEINNIEGFGEIVAEAIADFFAEPH
NEQALDALLEHVTPQPMEAIVSESPVAGKTVVFTGALEHMTRDEAKAQAERLGAKVAASV
SKKTDLVVAGPGAGSKLAKAAEFGVETISEEDWLKLTGRR
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagccaaagcccgtcgatacgctgaccctcgggcaggcgcgccgtgaacatgcg
cgccttgaagccgagatcagcgcccatgacaggcgctattacactgaggatgcgccgacc
gtctcggacgccgaatatgacgctttgcgcctgcgctatggcgcgcttgaggccgctttt
ccagagctttcgacgcccgcttcactcaccaaaaaagtcggcgcggcgccgtccgagaaa
ttcgcaaaagtccgccacaaggttccgatgctctcgctcggcaacgtcttcagcgacgag
gacgtggcggaattcgccgcgcgcgtgcgccggtttctcggccttgcgcccgaggcaaag
ctcgccatcacggcggagcccaagatcgacggactgtcctgctcgctgcgcttcgagcat
ggcgaactggttcaggctgcgacccgcggcgacggctttgagggcgaggacgtcaccgcc
aatgtgcgcaccatcggtgaaatcccggcaaagctgcgcggcgagccgcccggcgttctc
gaggtgcgcggcgaagtctatatgacgcatggggattttgccgcgatgaatgcgcgccag
atcgaggcgggcaagcctgttttcgccaatccgcgcaatgcggcggcaggctcgctgcgc
cagctcgatccttccgtcactgcggggcgtccgctgcatttcttcgcctatgcgtggggc
gaggcgagcagcctgccggccgagacccaaatgggcatggtcgccgccttcaaatctttc
ggcctgccggtcaatcccttgatgacgctctgccattcggcgcaggaactgcttgaacaa
tactaccggatcgaggcgatgcgcgcctctctcggctatgacatcgacggggttgtctac
aaggtcgattcgcttgcgttgcaggagaggctcggcttcgtctcgcgttccccgcgctgg
gcgatcgcgcataaatttcccgccgaacaggcgacgaccgttttgcgtgacatcgaaatt
caagtcggccgaacgggcgcgctgacccccgtcgcgcgccttgatccggtgacggtcggc
ggcgtcgtcgtctccaatgcgacgctccacaatgaggacgagatcgcgcgcaaggatatt
cgcatcggcgatacggtaagaatccagcgcgccggcgacgtcatcccccaggttctcgga
cccgtgctggaaaagcgcccgcagggcgccaaaccctatgtttttcccgaccattgtccc
gtctgcgggtcggcggcgatccgcgagatcgacgaaaagacgggcgtcgccgatgtcgtg
cgccgctgcacaggcggccttatctgttcggcgcaggcggtggaacggctcaagcatttc
gcctcccgcaatgcgctggatatcgaagggctcggggacaagcagatcgagcagttttat
catgatgggctgatcaagacgcccgcggatattttcacgctggaggtgcgcgacaaagcc
tcgttgaaaaagctgaaggaccgtgagggctatggcgagacctcgacccgcaatctgttc
agggcgatcgaggcgcggcgggagccgccgctcaaccgcttcatctatgcgctcggcata
agacatgtcggcgagaccaatgcgcgccgtctcgcgcgtcatttcggctcattcgcggcg
ctgcgcgagaccggccgcgccgccgccgagggttcggaggcgcgcgcggagatcaataat
atcgaaggatttggcgaaatcgtcgccgaggccatcgccgatttcttcgccgagccgcat
aatgagcaggcactggacgcgctgctcgagcatgtgacgccgcagccgatggaggctatc
gtctcggaaagcccggtcgccggcaagaccgtcgttttcaccggcgcgctcgaacacatg
acgcgcgacgaggccaaggcgcaggcggagcggttaggggccaaggtcgcggcctcggtg
tcgaaaaagaccgatcttgtcgtcgccggtccaggcgccggatcaaagctcgccaaggcg
gcggagtttggcgtcgagacaatcagcgaggaagactggctgaagctgacggggcggcgt
tga
DBGET
integrated database retrieval system
