Mycobacterium tuberculosis CCDC5079: CFBS_1333
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Entry
CFBS_1333 CDS
T02679
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mtur
Mycobacterium tuberculosis CCDC5079
Pathway
mtur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBS_1333 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtur03019
]
CFBS_1333 (deaD)
03009 Ribosome biogenesis [BR:
mtur03009
]
CFBS_1333 (deaD)
Enzymes [BR:
mtur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFBS_1333 (deaD)
Messenger RNA biogenesis [BR:
mtur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFBS_1333 (deaD)
Ribosome biogenesis [BR:
mtur03009
]
Prokaryotic type
rRNA helicases
CFBS_1333 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
HEM4
LytR_C
B_solenoid_dext
Motif
Other DBs
NCBI-ProteinID:
AGL99765
LinkDB
All DBs
Position
1399957..1401648
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AA seq
563 aa
AA seq
DB search
MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS
SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI
LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA
LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD
IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH
LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD
VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH
KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL
RPYRPPDAARRHNGGKPRRKHVG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggccttcccggaatattcgcctgcggcgtccgctgcgacgtttgctgacctgcagatt
catccccgcgtcttgcgggcgatcggcgacgtcggttacgagtcaccgacggctatccag
gcggctacgatcccggcgttgatggcaggctccgacgtggtggggctggcgcagaccggc
accggcaagacggcggcatttgcgattccgatgctgtccaagatcgacatcaccagcaag
gtgccccaggcgctggtgctggtgcccacccgggagctggctctgcaggtggccgaggcg
ttcggccgctacggtgcctatctgtcgcaactcaacgtgctgccgatctacggcggatcg
tcgtatgccgtgcaactggccggattgagacgcggcgcgcaggtggtggttggcaccccc
ggtcgtatgatagaccatctcgaacgggcgaccttggacctgtcgcgggtggactttcta
gtgctcgatgaggccgatgagatgctgaccatgggtttcgccgacgacgttgagcgcatt
ctgtccgagacccccgaatacaagcaggtcgccctgttttccgcgaccatgccgccggcg
atccgcaaactcagcgccaagtatctgcacgatccgttcgaagtcacttgtaaggcgaaa
accgctgtggccgagaatatttcgcagagctacattcaggtagcacggaagatggacgcg
ctcaccagagtgctcgaagtcgagccgttcgaggcgatgatcgtctttgtccgcaccaag
caggcgaccgaggagattgccgaaaagctgcgtgcccgagggttttccgcggctgccatc
agcggtgacgtcccgcaggcgcagcgggagcggaccatcacggcgctgcgggacggcgac
atcgatatcctggtcgccaccgatgtggcggcgcgcggactcgacgtggagcggatatca
cacgtgcttaactacgacatcccgcacgacaccgagtcctacgtacaccggatcgggcgc
accggcagggccgggcgttcgggagccgcgctgatattcgtctcgccacgggagcttcac
ctgctcaaggcgatcgaaaaggctacgcggcaaacgcttaccgaggcgcaattgcccacc
gtcgaggatgtcaacacccagcgggtggccaagttcgccgattccatcaccaatgcgctg
ggcggtccgggaatcgagctgttccgccgactggtcgaggagtatgaacgcgagcatgat
gtcccgatggctgacatcgccgcggcactggccgtgcagtgccgcggcggtgaggcattc
ctgatggcacccgacccgccgctttcgcggcgcaaccgcgaccagcgtcgggaccgtccg
caaaggcccaagcgtagaccggacttgaccacctaccgcgtcgccgtcggcaagcggcac
aagatcggtccaggcgccatcgtcggcgccatcgccaatgagggtgggctgcaccgcagc
gacttcggtcagatccgtatcgggccagacttctcgctagtagaattgccggcgaagctg
ccccgcgcgacgctcaaaaagcttgcacagacccgtatctcgggtgtgctgatcgacctt
cggccataccggccgcccgacgcggcgcgccggcataatggcggcaaaccacggcggaaa
cacgtcggatga
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