Musa acuminata (dessert banana): 103970388
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Entry
103970388 CDS
T03447
Name
(RefSeq) uncharacterized protein LOC103970388 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103970388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
103970388
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103970388
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103970388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Glyco_hydro_84_hel
Motif
Other DBs
NCBI-GeneID:
103970388
NCBI-ProteinID:
XP_009382425
UniProt:
A0A804L433
LinkDB
All DBs
Position
BXJ2-11:complement(3531804..3569989)
Genome browser
AA seq
2436 aa
AA seq
DB search
MLPFSSTVAGEIRLLLQSVNDSNFDSIYRELCQFVDYGSEVSTLLLRRCLDQIIVKDGET
SQLKWDLVTAVVRYLLDRPNFSTNLCEALDGMPISEGFLGDISNTLGFSVTEKIGIGLAL
SDCENPDLRMRGQNFCIAQIEELCANPSSILNSDQIQDIVMFLYRTEGLSKHMDSFTKIL
SLLQLKGCSFFLSAPLLTNDINAANNLRHLDLFSGCSDNDFDAVLAEIEKEMSMADIVTE
LGYGCTADASHCKEILSQFQPLNEVTVSKLIGTIVRTHSGLEDPLNIHATFCSALGSSLT
SDSSSLNSWDFNVLVDTIKQLAPKTNWVLVMEKLDHEGFLLPDETAFSHLMSIYRSACQD
PFPLHAICGSVWKNAEGQLSLLRYAVSAPTDVFTFAHCSRQLMYGDLAHFKHGNQAWCCL
DLLDVLCQLAERGHASLVRLILDFPLSQCPEVLLIGVAHINTAYNLIQYEVSSSVFPVIL
KDSSRNNIFHHLWCINPNLVLRGFIETQIDSNNLLRIVDICQDLKILSSVLATTPFAFSI
RLAAIASRKDHMNLENWLNENLSVYKDVFFEDCLKFLKEVLGDGTNDVSDGSLPQSRPAV
LNAYRETCSVFFKVLQAHSGQLVSHQLFEEMKKLHISSPPKTQNAGTVGGAVSEGISDDI
ESEANAYFHQMFAGQLSVEAMVQMLARYKESSDKREQMVFECIIANLFEEYKFFPKYPDR
QLKLVAVLFGSLIKHQLVTHLALGIALRGVLDALRKSVDSKMFMFGTKALEQFMDRLVEW
PQYCNHILQISHLRGTHAELVSFIERELTRISSSQSESNSVNAMPVDQQQGSGTAATESV
EASEASWHLMSSTSTQLGQQFSSLQLQQRHQGFLGERTKASTMSVSYTKPLLSHTGQSSF
LSGSVESVTNQKPLQTTSSHHTATVTTTVSSSPGFLRARSATPAGMLRQPSYSTGFGAAL
NIETLVAAAERRDTPIEAPSSETQDKILFMINNISTSNMDAKAKEFGEILKEQYYPWFAQ
YMVMKRASIEPNFHDLYLKFLDKVNSKSLNKEIVKATYENCKVLLRSDLIKSSSEERSLL
KNLGSWLGKFTIGRNQALRAREIDPKALIIEAYEKGLMIAVIPFTSKILEPCQSSVAYLP
PNPWTMGILSLLAEIYNLPNLKMNLKFDIEVLFKNLGVDMKEVKPTALLKDKIREVEGNP
DFSNKDITAAQPPFVEVNSGLLPALNHVELQAEVNNSPHPTSHPNALTQYAAAPHLASNS
VLEDDKMGVINMPERVPSAQGLTQVTPSPSPSPSPSPSPSPSPFSLSQLLTIIPNSDSYI
NINPKLSSMGSHLQFHRIIQVAMDRAIREIVSPVIQRSVTIASRTTKELVLKDYAMETDD
GVISRSAHLMVGTLAGSLAHVTCKEPLRVALSTHLRSLLQTLSVTTDRIDQIVQILTTDH
LDLGCAVIENVASEKAVELIDGEIGPAFAAIRKQREAAGSAYFDAVTYAQGSFSRMPEAL
RPKPGRLSLSQQRVYDDFIKNIWQNQSGQNSTAVSLGVPCMGGSVNNSSLSRVYGSSSAP
TSSNVYSTSQVVPFSSVAPPLDLISEETERGSAQLFSVSPTYGGSNDSLVQHGGEMNSVV
APAVTSPDLHMVDPAVVSKDLTAVVPPSPTPSIDRLGTVLPESLLSTGDALEKYQQVAQK
LEAMISTDARDIEIQGVVAEVPDIILKCESRDEAALAVAQKVFKSLYENASNALHIASHL
AILAAIRDVCKLVVKELTSWVIYSDEERKFNKEITVGLIRSELLNLAEYNIHLAKLIDGG
RNKAATEFAISLVQTLVVQEPGVSMSELYNLIDALTKLAMKPGSPESLQQLVEIARSNVS
SPNVAANKEEKTRQFKDKKVLSGRSLTNKEELDSNEPALADPAGFRDQVAAYFADWCRLC
ELPAANESTYTHYISQLQQNGLLKGDDITDRFFRILMELSVTYCQVVHEQPQQLSFFSID
SYAKLVVLILKYSSVDQGATKAVLLPKILSVTIRVIQKDAEEKKLSFNPRPYFRLFINWL
LDLTSPDVVDSANFQVLTSFANAFHALQPLKVPGWSFAWLELVSHRSFMPKLLTCNSPKG
WPFFQRLLVDLFKFMEPYLRNAELSEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDV
IPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISQPPRILSDVDGALKAKQIKAE
IDDYLKTAEGSSFLSELKQRLLLPQSEANLAGTRYNVPLINSLVLYIGMQAIQLLQSKST
AQHPSTQQVNHSPPMDLFLVSTPMDIFQSLINNLDSEGRYLFLNAVANQLRYPNNHTHYF
SFVLLYLFAEAKQDIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYDFWNRSFTR
SAPEIEKLFESVSRSCGGPKTVNDGMVSAGIRDGGH
NT seq
7311 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttctcttccaccgtcgctggagagatccggcttctgctgcagagcgtgaac
gactccaacttcgattcgatctatcgcgagctctgccagtttgtcgattacggaagtgaa
gtcagcactttgttgctccggagatgtttggatcaaataatagttaaagacggggagact
tcacaactgaaatgggatcttgtaactgcagttgtaagatatttgctggacagaccaaat
tttagcacaaatctttgtgaagctttggatggtatgccaataagtgaagggttcttagga
gatatttcaaacacattaggtttttcagtaactgagaaaattggtattggacttgctttg
tcggattgtgaaaatcctgatctgaggatgagagggcaaaatttttgcattgctcagatc
gaggaattgtgtgcaaatccatcgtcaattttaaatagtgatcaaattcaggatattgtt
atgttcctctatcgaactgaaggcctttcaaagcacatggattcttttaccaaaatttta
tctctgctccaattgaaagggtgctctttcttcttatcagccccattgctgacaaatgat
atcaatgcagctaacaatttgaggcatttggatctattttctggatgctctgataatgat
tttgatgctgtattagctgaaattgaaaaggaaatgagcatggctgacatagtgacagaa
ttggggtatggatgcacagctgacgcttcgcattgtaaagagatactatctcaatttcaa
ccactcaatgaagttacagtttctaagttaataggcacaattgtccggactcatagtggt
cttgaggatcctctcaacattcatgcaacattttgttcagctcttggtagcagcttaact
agtgattcttcatcattgaactcatgggattttaatgtccttgttgacacgattaagcaa
cttgctccaaagacaaattgggtgcttgtcatggaaaaacttgaccatgagggttttcta
cttcctgatgaaactgcattttcacatctaatgtccatttacaggagtgcgtgccaggat
ccttttcctctccatgctatttgtggctctgtctggaagaatgcagaaggccaactttct
cttttgagatatgcagtgtcagccccaactgatgtgttcacatttgcgcattgttcaaga
caactgatgtatggtgatctagcacatttcaagcatggaaatcaggcatggtgttgttta
gatcttttggatgttttatgccagcttgcagaaagaggccatgccagcttggtgcgactc
atactagatttccctcttagtcaatgtccagaggttctacttattggagttgcccacatt
aatactgcgtacaatctcatccagtatgaagtatcttcttcagtgtttcctgtaatacta
aaagattcttcaaggaacaacatttttcatcatctctggtgtataaatcctaacctggtc
cttcgaggatttatagaaacccagattgattccaacaaccttttgaggattgtggatatc
tgtcaagatctgaagatcctatcatcagtgttggctacaactccctttgcttttagcatt
agactggctgccattgcttctaggaaagatcatatgaatcttgagaattggttgaatgaa
aatttgagtgtatataaagatgttttttttgaggattgtctgaagttcttaaaagaggta
cttggcgatggaaccaatgatgtatcagatggttctcttccacagtctcgaccagctgtt
ctgaatgcctaccgtgagacatgctctgtatttttcaaggttcttcaggcccattccgga
cagcttgtttctcaccagctttttgaggaaatgaagaagctgcatatctcatctcctcca
aagactcaaaatgctggaacagtgggtggagcagtttcagagggcatctctgatgatata
gagtctgaagcaaacgcttacttccatcaaatgttcgctggacaattgtccgttgaggca
atggttcagatgcttgcacgttataaagaatcttctgacaaaagggaacagatggttttt
gaatgtatcattgcaaacctgtttgaagagtacaagttctttcccaagtatcctgacagg
caattaaaattagttgcagtgctatttggttctctaataaagcaccaacttgtgactcat
cttgcgcttggtattgctttgcgtggggttcttgatgcattgcggaaatcggtggattca
aaaatgtttatgtttggtaccaaggccttggagcagttcatggatcgtcttgttgagtgg
ccacaatattgcaatcatatattacagatatctcatttgcgtggaacacatgctgagttg
gtttcttttattgagagggaactaacaagaatttcttctagtcagtcagagtcaaatagt
gttaatgcaatgcctgttgatcagcaacaaggttcgggaactgctgctactgaaagcgtg
gaggcatctgaagcatcatggcatttgatgagttccacttctacgcagttgggacagcag
ttttcctctttacagcttcaacagaggcatcagggtttcctcggtgaaaggactaaagcc
tctaccatgtctgtcagttatacgaaaccgcttctatcccatactgggcaatcttcattt
ctatctggatctgttgaatctgtcacaaatcagaagcctttgcaaaccacatcatcgcac
catactgccactgtgacaactactgtatcatcatctcctggttttcttcgtgctcgaagt
gcaacacctgcaggcatgcttcggcaaccttcttacagcacaggttttggggctgcattg
aacatcgaaacacttgttgcggcagcagagagaagagatacaccgatagaagctccctca
tcagaaactcaagacaagatcttatttatgattaacaacatttcaacttcaaacatggat
gcaaaagcaaaagagtttggtgagattctcaaggagcaatactatccttggtttgcgcag
tatatggtgatgaaaagagcgagcatcgaaccaaactttcatgacttgtatctgaagttc
ttggataaagttaactcaaaatcactaaataaggagattgttaaagctacttacgagaac
tgcaaggtcttgctaagatctgatcttataaaatcaagttctgaagaacgttctttgctt
aaaaatcttggtagctggcttgggaagttcacaatcggtaggaatcaagcattgcgtgcc
agagaaattgatccaaaagctttgataatagaggcatacgagaaggggctgatgattgct
gtgatcccatttacttcaaagattctggaaccatgccaatcgagtgtagcttatctacct
cccaatccttggactatgggcatcctcagtttgcttgctgagatctataatctaccaaac
ctcaaaatgaacctgaaatttgacatagaggttttatttaagaaccttggcgtagatatg
aaagaagttaaaccaactgcacttctaaaagataagattcgtgaagtagaggggaatcca
gatttttcaaacaaggacatcactgcagcacaaccaccatttgttgaagttaattcagga
ttattgcctgcattgaatcatgtagagttgcaagctgaggtcaataattcacctcatcca
acaagccatccaaatgcattgactcagtatgctgctgctccacatctggcttcaaattcc
gttttggaggatgacaaaatgggggttataaacatgcctgaacgtgttccatctgctcag
ggtttgactcaagttacaccatctccatcaccatctccttcgccatcaccatctccttca
ccatcacctttttctttgagccagcttctgacaataattccaaactctgactcttacatc
aatattaatccgaagcttagttccatgggctcacatttgcaatttcatagaattattcaa
gtggcaatggatagggccattagagaaattgtgtctcctgttattcagcgaagtgtgaca
atagctagcaggacgaccaaggaactcgtgctgaaggattatgctatggagacggatgac
ggtgtcatatcacgatctgcccatctaatggtcggcactttagctggaagtttggctcat
gtaacttgcaaggaacctcttcgggtggccctttcaactcatcttagaagtcttcttcaa
actttgagtgttactactgatcgtattgaccaaatagttcagattcttacaaccgatcat
ctagatcttggttgtgcagtaattgaaaatgtggcatcagagaaggctgtggagctgatt
gatggagagataggtcctgcatttgctgctataagaaaacaaagagaagcagctggatct
gcatattttgatgctgttacctatgcacaaggttcattttcacgtatgccagaggcactt
cgtccaaaacctggccgtctctccctttcacaacagcgagtctatgatgattttatcaag
aatatttggcaaaaccaatctggtcagaattcaactgctgtctctcttggtgttccttgt
atgggtggttctgtcaataattcttccctgtcacgtgtgtatggttcaagttctgctccc
actagttccaatgtgtactccacttcccaagtggttcccttcagctcagtagctccaccg
ttggaccttatctcagaagaaacggaacgtggttcagcgcagctttttagtgtctcccca
acttatggtgggtctaatgatagtctcgtccaacatggtggtgaaatgaattcagttgta
gctcctgctgttacttctcctgatctgcatatggttgatccagcagttgtgtccaaagat
ttgacagctgttgtgccaccatctccaacaccttctatagatcgtctgggaactgtttta
cctgaatcattgctgagcactggagatgcattagagaagtaccagcaagttgctcagaag
ttggaggccatgatttctaccgatgccagagacattgaaattcagggagttgttgctgag
gtgccagatatcatactaaaatgtgaaagccgagatgaagctgcgttggctgtagctcaa
aaggttttcaagagcctctatgaaaatgcatcaaatgctcttcacatcgcatcccatctt
gcaattctagctgctatacgagatgtttgcaagcttgttgtcaaagaattaacgagctgg
gtaatttactcagatgaggagcgaaagtttaataaagaaatcactgtaggcctcattcgt
tctgagttgctgaacctggcagagtacaacatccatttggcaaaacttatagatggggga
aggaacaaggctgccactgaatttgccatatcccttgtgcaaactttagttgttcaagaa
cctggagtaagcatgtcagaattgtacaatctcattgatgccttgacaaagctggcaatg
aagcctgggtcgcctgagtcattgcaacagttggttgagattgctaggagtaatgtaagc
tctcctaatgtagctgctaacaaagaagagaagaccagacaattcaaggataagaaggtt
ctttctggtcgttccttgacaaacaaagaagagcttgattcaaatgagccagcacttgct
gatcctgctggtttccgagatcaggttgctgcttactttgctgattggtgtcggctttgt
gagcttccagcagcaaatgagtcaacgtatactcattacatttcccagttgcaacaaaat
ggtttgctaaagggcgatgacattacagatcggtttttccgtattctcatggagctttct
gttacatattgtcaagttgtccatgaacaaccacagcagctatcatttttttcaattgat
tcatatgcgaaacttgtggttctaattttaaagtactcgtctgtggatcaaggagcaact
aaagctgttctccttcccaagattttgtcagtgactataagagtcattcagaaagatgca
gaagagaaaaaactctcatttaacccaaggccttacttcaggttgtttattaattggctt
ttggacttgacttcccctgatgtagtcgatagtgccaactttcaggtcttgacttctttt
gcaaatgcgttccacgcgttgcagcctttaaaagttcctggttggagttttgcatggctt
gagttggtgagtcatagaagcttcatgccaaaattgcttacatgcaattcaccaaaaggt
tggccatttttccagcgcctgcttgttgatttattcaaattcatggagccatacttgaga
aatgcagagctgtctgagccggtgcaatttttatataaaggaactctgagggtgctcctt
gttctgctgcatgactttcctgagttcctctgtgactatcactttagtttctgtgatgtg
attcctcccagttgcatccagatgcgtaatgttattctgagtgcgtttccccgtaatatg
aggcttcctgatccatccactcccaacttaaagatcgatctgcttgctgaaatcagccaa
ccacctcgcattctatctgacgttgatggtgctctaaaagccaagcaaataaaggctgag
attgatgactaccttaagacagctgaaggatcttcttttttaagtgaactaaagcagaga
ttgctgcttcctcagagtgaagcaaacctggccgggactcgttacaatgtacctttgatc
aattcgcttgtgctttacataggaatgcaggctatacaactgttgcagagcaagtctact
gctcagcatccatctacccaacaagtgaaccacagccctccaatggatcttttcttagtt
agcacacctatggatatcttccagagtttgattaataatctagattcagaaggccgctac
ctctttctaaatgcagttgctaatcagctgcggtaccctaacaaccacactcattacttc
tcctttgtcctgctatacttatttgctgaggcgaaacaggacatcatccaggagcagata
actcgtgtactgttagagcgcctgatagttaaccgacctcatccttggggtttgctcatc
acttttattgaactgatcaagaacccacggtatgacttctggaatcgttcatttacacga
tcggcacctgagattgagaagttgtttgaatcagtatcgaggtcctgtggtggtcctaaa
actgtgaatgatgggatggtctctgctggtatccgagatggtggccattga
DBGET
integrated database retrieval system
