Musa acuminata (dessert banana): 103976141
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Entry
103976141 CDS
T03447
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
mus
Musa acuminata (dessert banana)
Pathway
mus03018
RNA degradation
mus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103976141
09123 Folding, sorting and degradation
03018 RNA degradation
103976141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mus03019
]
103976141
03041 Spliceosome [BR:
mus03041
]
103976141
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103976141
mRNA degradation factors
5'-3' decay
Lsm complex
103976141
Spliceosome [BR:
mus03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103976141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
103976141
NCBI-ProteinID:
XP_009389618
UniProt:
A0A804I0S2
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Position
BXJ2-2:24704913..24715032
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AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETTKSRTDRKPPGVGRGRGRGREDNSGRPAKGIGRGQDD
GSGRGGGGRGRGGAGGKGGGARGGGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctatcgcttctgaagacagcacaagggcatcccatgctggtggagttgaag
aatggggagacttacaatgggcacttggtgaactgcgatacctggatgaatatccacctc
cgtgaggtcatttgtacctcaaaggatggtgatcgattttggaggatgccagaatgttat
attcgtgggaataccattaagtatcttcgagttcctgatgaggtgattgacaaggttcaa
gaggaaaccaccaagagtcgtacagacaggaagccacccggtgttggccgaggaagggga
agaggtagagaagacaacagcgggaggcctgccaagggcattggacgtggtcaagatgat
ggaagcggcagaggtggtggtggtcgtggccggggcggagctggtggtaaaggtggcggt
gctagaggtggagggcgtggccgtgggtga
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