Musa acuminata (wild Malaysian banana): 103985434
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Entry
103985434 CDS
T03447
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mus
Musa acuminata (wild Malaysian banana)
Pathway
mus03020
RNA polymerase
mus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103985434
09124 Replication and repair
03420 Nucleotide excision repair
103985434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
103985434
03400 DNA repair and recombination proteins [BR:
mus03400
]
103985434
Enzymes [BR:
mus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103985434
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103985434
DNA repair and recombination proteins [BR:
mus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103985434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
103985434
NCBI-ProteinID:
XP_009401403
UniProt:
A0A804HRP5
LinkDB
All DBs
Position
1:11245635..11255126
Genome browser
AA seq
1832 aa
AA seq
DB search
MDTRFPFSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETMERGKPKPAGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEEDTR
FKQALKIRNPKNRLKRIYDACKSKKKCSGGDDIDVQGQQDSEEPMKKSRGGCGAQQPNIT
IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRISDEDCLLLGLNPKYA
RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHKIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVIELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLIRFSAWHSESETGFITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKDLIKLAQEKQ
LEAEPGRTMMDSFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEYQ
KFDSLKMKKGEFDSVFRYEIDDDNWNPSYLQPEHVEDLKTIREFRNVFDAEVQKLEADRY
QLGTEIATTGDISIPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV
PGDDFLSMEAQKNATLLFNILLRSSFASKRVMKEYRLTREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
KPGVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVEFVKSYYEMPDED
IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNADKLILRIRI
MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDENEGFK
PDVEWMLDTEGVNLLAVMCHEDIDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEGD
HLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMDGGFGGPGGFDFGMTPS
RSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAFSPSSSPGYSPSSPGYSP
SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS
YSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY
SPTSPSYNPASAKYSPSLAYSPSSPRLSPSSPYGQSSPNYSPFNSRSGPDYSPSSPQYSP
SAGYSPTSPGYSPSSTSQYTPQMSNEDEESTR
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggacacgcgattcccgttctcaccggccgaggtcgccaaggtccgcaccgtccagttc
ggcatcctcagccccgacgagatccggcaaatgtcggtggtgcagatcgagcacggagag
acgatggagcggggcaagccgaagccagcagggctcagcgacccgcggctcggcaccatc
gaccggaagatgaagtgcgagacttgcatggctaacatggcggagtgccccggtcacttt
ggtcacctcgagctcgccaaacccatgttccatatcgggttcctcaagacggtgcttgct
attatgcgttgcgtctgcttcaattgctccaagatccttgctgatgaggaggataccagg
ttcaagcaagctttgaaaattaggaacccaaaaaataggttgaagagaatatatgatgcc
tgtaaaagcaagaagaaatgttctggtggtgatgacattgatgtccagggtcaacaagac
tcagaagaaccaatgaagaagagcaggggtggatgtggtgctcagcagccaaacattacc
atagatggaatgaaaatggttgcagaatataaagctccaaaaaagaaatctgatgaacaa
gagcagcttcctgaacctgctgagagaaaacaaattctttctgctgagagggttcttagt
gttctaaagaggataagcgatgaggactgtttgctattgggtttaaatcccaaatatgcc
cgccctgattggatgatattgcaagttcttccaattcctccacctcctgtaagaccttct
gtgatgatggatacttcttcgaggagtgaggatgatttgacacatcaattggcaatgata
attaggcacaatgagaatttgaggaggcaagagaggaatggagctccagctcacattatt
tcagaatttgctcaattattgcaatttcacattgccacatattttgataatgagcttcct
ggtcagcctagggctacacagcggtcaggacggcccattaaatctatatgcagtagacta
aaggctaaagaaggccgaattagaggtaacttgatgggaaagcgtgttgatttttcagca
cgaacagttattacacctgaccctacaatcaacattgatgaactcggagttccttggagc
atagctttgaatcttacgtacccagagaccgtaaccccatacaatattgagagattaaaa
gaacttgtggaatatgggcctcatcctcctcctggaaaaaccggtgcaaaatatatcata
cgagaagatggtcaaaggcttgatcttcgatacttgaaaaaaagcagtgatcaccatttg
gagcttggatacaaggtcgagcgccatttgtgtgatggtgactttgttcttttcaaccgg
cagcccagtctccacaaaatgtccatcatggggcacaagataaaaattatgccttactca
acttttcgcttaaatctatctgtaacatctccgtataatgctgattttgatggtgatgag
atgaacatgcatgttccccaatcttttgaaaccagagcagaagtcatagagctaatgatg
gtaccaaagtgtattgtttcacctcagtcaaatcgccctgttatgggtattgtccaggat
acccttctgggatgtcgcaagattaccaaaagggatacatttatagaaaaggatgtcttt
atgaacatcttgatgtggtgggaagactttgatggaaaggtacctgctcctgctatattg
aaacctaggccattgtggactggaaaacaagttttcaacctgatcatcccaaagcaaata
aacttaataagattttcagcatggcattcagaatcagaaactggtttcattactccaggt
gacactctagttcgaattgagaagggtgaacttctttcaggcaccctttgcaaaaaaact
ctaggaacatctactggaagtcttattcatgtcatctgggaagaagttggcccagatgca
gctcgcaaatttttggggcacacacagtggcttgtgaactattggctgttacagaatgct
tttagtattggaattggagacacaattgccgatgcagcaacaatggagaaaatcaatgaa
acaatctcaaaagctaaaaatgacgtgaaagatcttatcaagcttgcacaggagaagcaa
ttggaagctgaacctgggcgaaccatgatggactcgttcgaaaatagagtaaatcaggta
ctgaataaggctcgtgatgatgcgggtagtagtgcccagaagagcttatccgaaagtaac
aacttaaaggccatggttactgctggatcaaaaggtagttttatcaatatctcacagatg
actgcctgtgtggggcagcagaatgttgagggcaaacgaataccctttggtttcattgat
cgaacattgcctcatttcactaaagacgattatgggcctgaaagtcgtggttttgtggag
aattcataccttcgtgggttgacaccacaagagttcttttttcatgccatgggtggtagg
gaaggtttgattgatactgctgtcaagacttctgagacgggctacatccaacgtcgtctt
gtaaaggctatggaagacataatggttaaatatgatggtactgtcagaaattctctgggg
gatgttattcagttcttatatggagaagatggtatggatgctgtttggattgagtaccag
aaatttgattcgttgaagatgaaaaagggcgagtttgatagtgttttcaggtatgagatc
gatgatgacaactggaatcctagctacttacaacctgagcatgttgaggatttgaaaact
atccgtgagtttagaaatgtgtttgatgcagaggttcagaaactagaagctgaccgttac
cagcttggcactgagattgctactactggtgatatctcaattcctatgcctgtgaatctc
aagagacttatctggaatgcacaaaagacattcaagattgatctgagaaggccatctgac
atgcacccaatggagattgtggaagctattgataagcttcaagaaaggctcaaagtggtt
cctggtgatgattttttgagcatggaggctcaaaaaaatgctactttattattcaatatc
cttcttcgtagttcatttgctagcaaacgggttatgaaggagtataggctcactcgtgag
gcatttgaatgggttattggtgaaattgaatctcgttttctgcagtcactggtagctcca
ggtgaaatgattggctgtgtagctgcccagtctattggagagccagctacacagatgacc
ttaaataccttccattatgctggtgtgagtgccaagaatgtcactcttggagttcccagg
ttgagggaaattattaatgttgctaagaagattaaaactccttctctttctgtttatttg
aagcctggggttaataaaaagaaagaactggctaagaatgtacaatgtgcattggaatac
acaacactgcgaagtgttacacatgccactgaaatatggtatgatcctgaccctatgagt
accattattgaggaagatgtggaatttgtcaagtcatattatgaaatgccagatgaggat
attgctcctgaaaagatatctccttggctgcttcgtattgaactgaatcgcgagatgatg
gttgacaagaagttgagcatggcagacattgcagagaagatcaatcatgagtttgatgat
gatttgacatgcatctttaatgatgataatgcagacaagctcatcctccgtattcgtatc
atgaatgatgatgcgcctaaaggtgaattacaagacgaatctgcggaggatgatgtcttc
ttgaaaaagatcgagagcaacatgttgaccgaaatggcacttcggggcattcctgatatc
aataaagtttttatcaagtcaggaaagataaataggtttgatgaaaatgaaggcttcaaa
ccagatgttgagtggatgctcgacactgaaggcgttaatcttttggctgttatgtgccat
gaagatattgatgcaactaggactacaagcaaccacttgattgaagttattgaggttctt
ggcatcgaggctgttcggagatctctcttggatgagttgcgtgtggtcatatcttttgat
ggatcttatgtgaattaccgtcacttggctattctatgtgacacaatgacctacagaggt
cacctaatggccatcacccggcatggtatcaatagaaatgatactggccccatgatgaga
tgttcattcgaggaaactgttgacatcctccttgatgctgctgtctatgctgaaggtgac
caccttagaggagttactgaaaatattatgcttggtcagcttgcaccaattggcacaggt
gattgtgcactgtatttgaatgatcagatgttgcaacaggcgattgaactccaacttcct
agttatatggatggtggttttggtggtcctggtggatttgattttggaatgacaccatct
cgatcacccatatccgggacaccatatcatgaaggaatgatgtctccaagttacttgctg
agcccaaatattcgtgcttcaccgattacagatgctcagttttctccttatgttggtgga
atggctttctcccccagttcatctccaggttacagtccatcatctccaggctacagtcca
tcatctccgggatacagtcctacttctccaggttatagccctacttctccaggatacagc
cctacatctcccggttatagtcccacttctccgacctacagtcctagctctcctggatat
agtcctacaagtcctgcttactctccgacaagtccatcatattcgccaacttctcccagc
tacagcccgacctctcccagttatagccctacatctcctacttatagtcctacttccccc
agttacagcccaacttcccccagttacagtcctacttcgccaagctacagccctacttct
ccagtttacagtccgacttccccagcctacagtccaacatctcctgcctacagcccaacc
tcaccatcctatagtccaacatcaccttcctatagtccgacatcaccttcatatagccca
acatcaccttcatatagcccgacttcaccatcatacagtcctacctcacctgcctatagc
ccaacttctccgggatacagtccaacatctcctagctatagtcctacatccccaagttat
agccccacatctccaagttacaatcctgcctcagcaaagtacagtccttcgcttgcttat
tctccaagcagtccaaggctgtcaccatccagtccatacggtcaatcatctccaaattac
agcccatttaactcccgttctggtccagattacagcccaagttctccacagtacagtccg
agtgcaggctactcgccaacgtcaccgggttactccccatcatccaccagtcagtatact
ccacagatgagcaacgaggatgaggaaagtacccgctga
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integrated database retrieval system
