Candidatus Methylopumilus universalis: FIT94_00950
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Entry
FIT94_00950 CDS
T10531
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
muv Candidatus Methylopumilus universalis
Pathway
muv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
muv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIT94_00950 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
muv03021
]
FIT94_00950 (rpoB)
03400 DNA repair and recombination proteins [BR:
muv03400
]
FIT94_00950 (rpoB)
Enzymes [BR:
muv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIT94_00950 (rpoB)
Transcription machinery [BR:
muv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIT94_00950 (rpoB)
DNA repair and recombination proteins [BR:
muv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIT94_00950 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QDC40662
UniProt:
A0AAX1EY71
LinkDB
All DBs
Position
159819..163988
Genome browser
AA seq
1389 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRERVQDIPYLLTMQLESYAAFLQKNTHAEQRLSEGLQSTFNSV
FPITSHSGNARLDFVTYNLGEEAFDVKECQQRGLTYGVPLRVKVRLTLMDKEASKPTVKE
IKEQEVYMGEIPLMTDNGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDYLYFRVDRRRKMPVTILLKALGYSPEQILETYYDFDSFHVTAKS
IDFELVPDRLRGEIAKFDIADKRGNVIVQKDKRITVKHIREMEKAGVNKITVDKDFILGR
KLSKAIVDKNTGEVIASANDEITESVLDKFIEVGVGQIHTLYSNDLDHGDYISQTLTSDE
VPDQYSAKVAIYRMMRPGEPPTEDAVEALFKGLFFNEDRYDLSNVGRMKFNRRAHPKAYE
QHANWLQRFYKRVGPQGETGANILSNDDILAVIGVLIELRNGRGEIDDIDHLGNRRIRSV
GELVENQFRTGLVRVERAVKERLSQAEADNLMPHDLINSKPISSAIREFFGSSQLSQFMD
QTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHSTHYGRVCPIETPEGPNIGLINSLA
LYARTNQYGFLETPYRRVENGKVTAKIDYLSAIEESEFVIAQANTELDNKGHFQDDLISC
RHRNEFTMSSVDPIQYMDVAPGQIVSVAAALIPFLEHDDANRALMGANMQRQAVPCLRAE
KAVVGTGIERTVATDSGTTVQAKRGGVVDYVDSRRVVIRVNDDEAADGEVGVDIYNLTKY
TRSNQNTNINQRPLVRIGNKIARGDVIADGASTDVGELALGQNMLVGFMPWNGYNFEDSI
LISERVVAEDRYTSIHIEELSVVSRDTKLGPEEITRDISNLSERMLGRLDESGIIYIGAE
VESGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTIIDVQVFTR
EGIDRDSRAEQIIDDQLKHFKQDLADQLRIVEDDTFGRIERLLTNKVATGGPKGLKKGEK
ISKDFLASINRYDWFDIRLGNDDASKQLESLKDNLATAKEQFDKRFEEKKRKLTQGDELP
PGVQKMVKVYLAVKRRIQPGDKMAGRHGNKGVVSKIAPVEDMPHMADGTPLDIVLNPLGV
PSRMNIGQILETHLGWAAKGLGLRIGEMLKEEVKITEVRKFLDQIYNDASGKKEDIKSLN
DDEVVELAEHLKNGVPFATSVFDGASESDIQYMLDLAYPDNDPKTKLLQFSANKTQVKLF
DGRTGEAFERPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYENIVKGEHKIDAGMPESFNVLVKEIRSL
AIDIDLDRN
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgagctattcctttactgaaaaaaaacgtattagaaaaagttttgctaaaagagagcgt
gtgcaagatataccatatttgctcaccatgcagcttgagtcctatgcagcttttttacaa
aagaatacgcatgccgaacagagacttagcgaaggcctccagtcaacattcaattcagta
tttcctatcacaagtcattccggtaatgcccgacttgattttgtaacttacaatttaggc
gaggaagcgtttgatgttaaagaatgtcaacaacgcggcttaacatatggtgttccatta
agagtcaaagttcgtttaactcttatggataaagaagcatcaaaaccaacagttaaagaa
ataaaagagcaagaagtgtacatgggtgaaattccacttatgacagataatggctcgttc
gttattaatggtaccgagagagttatcgtatctcagcttcatagaagtcctggcgtattt
tttgagcatgaccgaggcaaaacgcacagctctggaaagttattattttcagcaagaatt
attccttatcgtggctcttggttagatttcgaatttgatcctaaggattatttgtatttc
cgtgtggatcgtcgcagaaaaatgccagtcacaattttgttaaaagcgttaggttattca
ccagaacaaattctagaaacatactacgattttgattcattccatgtgactgctaaatca
attgattttgaattagttcctgatcgtctaagaggtgagattgctaagtttgatatcgct
gacaaaagaggaaatgtgattgtacaaaaagacaagcgcattactgttaaacatattcgc
gaaatggaaaaagcaggcgtaaacaaaattacggtagataaagatttcattttgggccgc
aaactttcaaaagcaattgtagataaaaatacaggcgaagttattgctagcgcaaatgat
gaaatcacagagtcagtattggataaatttattgaagtgggtgtaggacaaattcataca
ctctattcaaatgatttagatcatggcgattacatttctcaaacacttacttcagatgaa
gttcctgatcaatacagtgcaaaagtagctatttatcgaatgatgagacctggcgagcca
ccaactgaagatgcagttgaggctttatttaaaggattatttttcaatgaagaccgatat
gatttatctaatgtaggtcgcatgaaatttaatcgaagagcacatccaaaagcatatgaa
caacatgcaaattggttgcaaagattttacaaacgcgtaggccctcaaggcgaaactggt
gcaaatattttatcgaatgatgatatcttagctgtaattggtgttctgattgaattacga
aatggtcgaggtgaaatagatgatattgaccatcttggtaatcgaagaattcgttctgtt
ggtgagcttgttgaaaatcaatttagaactggtcttgttcgagtggagcgcgcagttaaa
gaaagattaagccaagctgaggcagacaatttaatgccacatgacttaatcaattcaaaa
cctatctcaagtgcgattagagaattctttggttcctcacaactatctcaatttatggat
caaaccaatccattatctgagattacgcacaagcgaagagtttcagcccttggccctgga
ggcttgacaagagagcgtgctggcttcgaggtacgtgacgttcattcgacgcattatggc
cgcgtatgtccaattgaaactccagaaggaccaaacattggcctcattaattcacttgca
ctttatgcaagaacgaatcaatacggcttcttagaaacaccttatagacgagttgaaaat
ggtaaagtcactgcaaagatagattatctttctgcgattgaagaaagtgaatttgttata
gcccaggcaaacactgagcttgataataaaggacactttcaagacgatttaatttcatgt
cgtcatcgtaacgaatttacgatgtcctcagtagatcctattcaatatatggacgtagca
cctggccaaatcgtttctgtggcagccgcattaattccatttctagaacacgacgatgca
aatcgtgcgcttatgggtgcaaacatgcagcgtcaagctgtgccatgcttgagagcagag
aaagcagttgtagggacaggtattgaaagaacagtagcaactgattctggcacaacagtt
caagctaagcgcgggggtgttgttgattatgtcgattcaagacgtgttgtgattcgcgtg
aacgacgatgaggctgctgacggagaagttggcgttgatatttataatctaactaaatac
acaagatctaatcaaaataccaatatcaatcaaaggccgcttgtaagaattggcaacaaa
attgcaagaggtgatgtgattgctgacggcgcatcaacagatgtgggcgaattagcactt
ggtcaaaatatgcttgttggatttatgccttggaatggttacaacttcgaggattcgatt
ttaatttcagagcgtgtagtagctgaagatcgatatacatcaattcatatcgaagaatta
tctgttgtatctagagatacaaaattaggcccggaagaaattacacgtgacatttcaaat
ctttcagaaagaatgcttggaagactagatgagtcaggcattatttatattggcgctgaa
gttgaatcaggcgatgtgcttgtaggtaaagttacaccaaaaggcgagacacaacttaca
cctgaagaaaaactcttaagagcaatttttggtgaaaaggcttctgatgtaaaagataca
agtttaagagtgccgtcaggcatgtctggaacaattattgatgttcaagtatttactaga
gagggcattgatagagattcaagagctgaacaaattattgatgaccaattaaaacacttc
aaacaagatctagctgatcaattaagaatcgttgaagatgatacttttggaagaatcgaa
agattacttacaaacaaagtcgcaactggcggcccaaaagggttgaaaaaaggcgaaaaa
atctctaaagattttctagcttcaattaataggtacgattggtttgatattcgcctaggt
aacgatgatgcttcaaaacaattagaaagtttgaaagataatttagcaactgctaaagaa
caattcgacaaacgttttgaagagaaaaaacgaaaattaacacaaggcgatgagctccct
ccgggcgttcaaaaaatggttaaggtttacttggccgtgaaacgcagaattcagcctggc
gataaaatggctggacgtcacggtaacaaaggtgttgtttcaaaaattgctcctgtagaa
gatatgccgcacatggctgatggcacacctttagatattgtattaaatccattaggcgtt
ccttctcgaatgaatatcggccaaattttagaaactcatcttggatgggcagctaaaggc
ttaggtcttcgtatcggagaaatgctaaaagaagaagtaaaaattactgaagttcgtaaa
tttttagatcaaatatacaacgatgcgtcaggtaaaaaagaagacattaagtcattaaac
gatgatgaggttgtagagcttgctgagcatttgaaaaatggcgttccatttgccacatca
gtgttcgatggcgcatctgagtcggacattcaatatatgttagatcttgcttacccagat
aacgatccaaaaacaaaactgttgcaattctcagcaaataaaacgcaagttaaattgttt
gatggccgcacaggtgaggcgtttgaaagaccggtcacagtaggttacatgcacgtactt
aaattacatcatttggttgatgacaaaatgcatgcacgttcaacaggaccttattctcta
gtaacgcaacagccacttggcggtaaagcacaatttggcggacaacgttttggtgagatg
gaagtttgggcgctagaagcatacggcgctgcttataccttacaagaaatgttgactgtt
aaatcagacgatgttgctggtagaactaaagtatacgaaaacatagtgaagggtgagcat
aagattgatgcaggcatgcctgaatcattcaacgtgttggttaaagaaattcgttcacta
gctattgatattgacctcgatagaaactaa
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