Microbulbifer variabilis: MJO52_02495
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Entry
MJO52_02495 CDS
T08656
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mvb
Microbulbifer variabilis
Pathway
mvb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MJO52_02495 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvb03021
]
MJO52_02495 (rpoB)
03400 DNA repair and recombination proteins [BR:
mvb03400
]
MJO52_02495 (rpoB)
Enzymes [BR:
mvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MJO52_02495 (rpoB)
Transcription machinery [BR:
mvb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MJO52_02495 (rpoB)
DNA repair and recombination proteins [BR:
mvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MJO52_02495 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
USD22023
UniProt:
A0ABY4VCL3
LinkDB
All DBs
Position
565747..569820
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPKVMDVPFLLAIQLDSYRNFTQADKRPDDRLDVGLQAAFKSV
FPIVSYSGNAALEYVSYTLGKPAFDVKECTLRGVTYACPLRVRVRLIIYDKESANKSIKD
IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYAARV
IPYRGSWLDFEFDPKDLVFVRIDRRRKLPATILLRALGYSSQEMLEMFFETSKFELQEDR
VSLELIPSRLRGDVASFDIKDGQGKVIVEEGRRITPRHIRQLEKAGVEKLDAPLEYLFGR
ILAHDIVDESTGEIAVECNAEITAEVIAQLRTLNIKTFETLYTNDLDRGPFISDTLRAEP
SRTQLEALVEIYRMMRPGEPPTKESAESLFENLFFTDERYDLSAVGRMKFNRRLGREDET
GEGTLSKEDIVDVLKTLIDIRNGQGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARANHYGFLESAYRKVV
DGKVTDEIAYLSAINEANYIIAQASAEVDDNGNFIDDLISVRHHGEFTLKAPGEIQYMDV
SAKQVVSVAAAMIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVARDSGVC
VVAKRGGVIERVDSSRVVVRVADAEVEAGDAGVDIYNLTKYIRSNQNTCINQRPIVNTGD
RVTRGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCIARDTKLGSEEITADIPNVGESALNKLDESGIVYIGAEVGAGDILVGKVTPKGEAQL
TPEEKLLRAIFGEKASDVKDTSLRAPSGTRGTVIDVQVFTRDGLQKDQRSIDIEKAQLDE
VRKDLNEEYRIVEGATFERLQQALQGQKAAGGKGISKGQELTTEVLATLPREDWFKLRME
DEGLNEQLEKAEVQLKERRKLLDEAFEDKKKKLESGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVISVIKPVEDMPYDQNGEPVDIVLNPLGVPSRMNVGQVLEMHLGMAAKG
LGVKIDKMIKEQQEVAKVRGFLEEVYNSTGGRKEELDQFSDQEVMTMAQNLRRGVPMATP
VFDGADESEIKQLLRLADIPDSGQITLHDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTKMY
KNIVDSDHRMEPGMPESFNVLVKEIRSLGMNFELEHE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggattttggcaaactgcctaag
gtcatggatgtgcccttcctgcttgcgatacagctggattcatatcgcaattttacacag
gccgacaagcgccccgacgatcgcttagatgtcggcctgcaggcggcgtttaaatccgta
tttccgattgtcagctattcaggcaatgccgctctggagtacgtgagctacacactgggt
aagcccgctttcgatgttaaggaatgtactctacgcggcgtgacctacgcctgtccgctg
cgtgtacgtgtgcgcctgattatttacgataaagagtctgcgaataagtccattaaggac
atcaaagagcaggaagtttacatgggcgaaatcccgctcatgacggacaacggcaccttt
gtaattaatggtactgagcgtgttatcgtatcccagctacaccgttccccgggtgtattt
ttcgatcacgacaaaggcaagacccattcctccggtaagctgctgtacgccgcgcgtgta
attccttatcgtggctcctggctggacttcgaattcgatccaaaggacttggtattcgtt
cgtatcgaccgtcgccgcaaactgcctgcgacaattctgttgcgtgcactgggatatagc
tcccaggaaatgctggagatgttcttcgagaccagcaagtttgagctgcaggaagaccgc
gttagcctggaactgattccctcccgcttgcgcggtgacgtggcctcttttgatattaaa
gatggccagggcaaggtgattgtggaagaggggcgtcgtatcaccccgcgtcatattcgc
cagctggagaaagccggcgtagaaaagctggacgcgccactggaatacctgtttggccgt
attctggctcacgatattgtcgatgagtctactggtgaaattgcagttgagtgtaatgct
gagattaccgctgaagtaatcgcccagttacgcacactcaatattaagactttcgaaacg
ctgtacaccaatgatctagaccgtggaccgtttatctccgataccctgcgtgcagagcct
tcccgcactcagctggaagcgctggtagagatctaccgcatgatgcgcccaggcgagccg
cccaccaaggaatctgcggaatccctgtttgaaaacctgttcttcaccgacgagcgctac
gatctgtccgccgttggtcgcatgaagttcaatcgtcgcctgggccgtgaagacgagacc
ggcgaaggcaccctgagcaaagaagatatcgtcgatgtactgaagaccttgatcgatatc
cgtaacggccagggcatggtggacgatatcgatcacctggggaaccgccgcgtgcgctcc
gttggtgagatggccgagaaccagttccgcgttggtctggtacgtgtggagcgcgcggtc
aaagagcgcctgtccatggcggagtccgaaggcctgatgccgcaggacctgatcaatgcc
aagccggttgccgctgcagtgaaggaattcttcggttcctcgcagctgtcccagtttatg
gaccagaacaacccgctgtcggaagtgactcacaagcgtcgtgtttccgcactgggccca
ggtggtttgacccgtgagcgcgctggctttgaggtgcgcgacgtgcacccgactcactac
ggccgcgtatgtccgattgagacgccggaaggaccgaacattggtctgatcaactccctg
gccacttacgctcgcgctaaccactacggtttcctcgaaagtgcttatcgcaaagtggtt
gatggcaaggtaaccgacgaaatcgcttacctgtcagcgatcaatgaagcaaattacatt
attgcccaggcgtctgcggaagtagatgacaacggcaacttcattgatgacctgatcagc
gtgcgtcaccatggcgaatttaccctgaaggcaccgggtgaaatccagtatatggatgtt
tccgccaagcaggtggtttctgtcgctgcggcgatgatcccgttccttgagcacgatgac
gccaaccgtgcattgatgggctcgaacatgcagcgtcaggcggtaccgaccctgcgtgct
gaaaagccgctagtaggcaccggtatggagcgcaccgtagcgcgcgactccggggtatgt
gtggtagccaagcgtggcggtgtgattgagcgtgttgattcaagccgtgtggtagtccgc
gtggcggacgctgaggtggaagccggtgatgcaggtgtagatatttataacctgaccaaa
tacatccgctccaaccagaatacctgtatcaatcagcgcccgattgttaacactggtgat
cgcgtaacccgcggcgatatcctcgccgatggtccttctgtagatctgggtgagctggct
cttggccagaatatgcgcatcgcctttatgccctggaatggttacaactttgaggattcc
atccttattagtgagcgcgttgtacaggaagatcgcttcaccactattcacatccaggaa
ctgacctgtattgcccgagataccaaactgggtagtgaggagatcactgcggatatcccc
aatgtgggtgagtctgcgctgaataagttggacgagtccggcattgtatatatcggtgcg
gaagtaggtgccggcgatatcctggtcggtaaggttactcctaaaggcgaagcacagctg
accccagaagagaagctgctgcgtgcaatcttcggtgaaaaagcttccgacgttaaagac
acttccctgcgcgcgcccagtggcacccgcggtacggtgatcgacgttcaggtattcacc
cgtgacggcctgcagaaagatcagcgttccatcgatatcgagaaggcgcagctggatgag
gttcgcaaggacctgaatgaagagtaccgcattgttgaaggcgctacctttgagcgtctg
cagcaagcgctgcagggtcagaaggctgccggtggtaaaggtatcagcaagggccaggag
ctcaccactgaagtactcgccactctgccacgtgaagactggttcaagctgcgcatggaa
gacgagggtctcaacgagcagctggagaaggcagaagtacagctgaaagagcgtcgcaag
ctgctcgacgaagcctttgaagacaagaagaaaaaactggagtccggcgatgacctggct
ccgggcgtattgaaaatcgtcaaggtctacctagcgatcaaacgccgcatccagccgggc
gacaagatggccggtcgccacggtaacaagggtgtgatctctgtaatcaagcccgttgaa
gacatgccttacgaccaaaacggtgagccggtagacatcgttctgaacccactgggtgtt
ccctcgcggatgaacgttggtcaggttctggaaatgcacctgggtatggctgctaaaggt
cttggcgtcaaaatcgacaagatgatcaaggagcagcaggaagtcgccaaggtgcgcgga
ttcctggaagaggtctacaactccacaggcggtcgcaaggaagaactggatcagttctcc
gatcaggaagtcatgaccatggcgcaaaacctgcgtcgcggtgtacccatggcgaccccg
gtattcgacggtgccgatgagagcgagatcaagcaattgctgcgccttgccgatatcccc
gattccggccagatcactctgcacgacggtcgtaccggtgatgctttcgagcgcccggtt
accgtgggctacatgtacatgctgaagttgaaccacctggtggacgacaagatgcacgcg
cgttccactggctcctacagcctggttacccagcagccgctgggtggtaaggcacagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcctacggcgccgcatac
accctgcaggaaatgctcacggtcaaatccgacgacgtggaagggcggaccaagatgtac
aaaaacatcgtggattccgaccaccgtatggagcctggcatgccggagtccttcaatgta
ctggttaaggaaatccgctctctcggtatgaacttcgagctcgagcacgagtaa
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