Mannheimia varigena USDA-ARS-USMARC-1388: X875_1710
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Entry
X875_1710 CDS
T03029
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mve
Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mve00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
X875_1710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mve03021
]
X875_1710
03400 DNA repair and recombination proteins [BR:
mve03400
]
X875_1710
Enzymes [BR:
mve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
X875_1710
Transcription machinery [BR:
mve03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
X875_1710
DNA repair and recombination proteins [BR:
mve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
X875_1710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
SPG4
RelB
Motif
Other DBs
NCBI-ProteinID:
AHG78793
LinkDB
All DBs
Position
168881..172906
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFAKFIEKDPEGQQGLEAAFRSVFPIV
SNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDREAAAGTIKDIKEQ
NVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFEKVKFEIADNKLLMT
LVPERLRGETASFDIAANGKVYVEVGRRITARHIRALEKDNVTQIEVPVEYIVGKVAAQD
YVDLSSGEVICSANMEISMEMLANLSAAGYKEIEVLFTNDLDHGPYISETLRVDPTYDRL
SALVEIYRMMRPGEPPTKEAAEALFDNMFFSAERYDLSAVGRMKFNRSLEIPEGEGTGIL
SNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVRERLS
LGDLDGVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVDGQVT
EEIEYLSAIEESNNIIAQANSNLDENFRFTDTYVTCRQQGESGLFKPEEVQYMDISTQQV
VSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKR
GGTIQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARG
EILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEELQLREAKKDL
SEELEILEAGLFTRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEE
LRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAARGIGDQINKMIKEQQEVAK
LREYMQKAYDLGHGSQVVDLSTFTDEEVMRLAQNLRKGLPLATPVFDGAHETEIKGLLEL
GGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPE
SFNVITKEIRALAIDMELDEA
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcatattcatattccgagaaaaagcgtatccgtaagagctttggtaaacgtccacaa
gttctgaacgtaccttatctattaacaattcagcttgattcttttgcaaaatttatcgaa
aaagatcctgaagggcagcaaggtttagaagcggcattccgttcagttttcccgattgtg
agcaataacggtgcaactgaattacaatacgtttcttacgaattaggcgagccggtattt
gatgtgcgtgaatgtcaaatccgtggcacaacctatgccgctccattacgtgtgaaattg
cgtttagtgtcttacgaccgtgaagctgcggccggtacaatcaaagatattaaagagcaa
aacgtgtatatgggcgaaatcccattaatgaccgacaacggtactttcgtgatcaacggt
actgagcgtgttatcgtttcacaattacaccgtagcccgggcgtgttcttcgactctgac
aaaggtaaaacccactcttcaggtaaagtgctttataacgcacgtattattccttatcgt
ggttcttggttagattttgagtttgacccgaaagataacttattcgctcgtatcgaccgt
cgccgtaagttaccggcaaccatcatcttgcgtgcattaggctacactaccgaagaaatc
ttaaacttattcttcgagaaagttaaatttgaaattgcagataataaattattaatgacc
ttagtgcctgagcgtttaagaggtgaaacagcgtcatttgatattgcagcaaacggcaaa
gtgtatgttgaagtgggtcgccgtatcaccgctcgtcacattcgtgcgttagaaaaagat
aacgtgacacaaatcgaagtgccggtggagtacatcgtcggtaaagtagcagcacaagat
tatgttgatttatcatcaggtgaagtgatctgttctgcgaatatggaaatctcaatggag
atgttagcgaacctttcggcagcaggctataaagagattgaagtactatttaccaacgat
ttagatcacggtccatacatttctgaaacattacgtgttgatccaacttacgaccgttta
agtgcgttagtggaaatttaccgtatgatgcgtcctggcgagccaccaacaaaagaagcg
gcagaagcgttatttgataatatgttcttctctgcagagcgttacgatttatctgcggta
ggtcgtatgaaatttaatcgctctttagagattcctgaaggcgaaggcacaggcatttta
agcaacgatgacatcatcggtgtgatgaaaaaattaattgagatccgtaacggtcgtggt
gaggtggacgatatcgaccacttaggtaaccgtcgtatccgttctgtaggcgagatggca
gaaaaccaattccgtattggtttagtgcgtgttgagcgtgcagtacgtgagcgtttatct
ttaggtgatttagatggcgtaaccccacaagatttaatcaatgcaaaaccgatttctgcg
gcagtgaaagagttcttcggctcttcacaactttcgcaatttatggaccaaaataacccg
ctttcagaggttacgcacaaacgccgtatttctgcattaggtccgggtggtttaacccgt
gagcgtgcgggctttgaggttcgagacgtacacccgactcactatggtcgtttatgtcca
atcgaaactccagagggtccaaacatcggtttgatcaactcactttctgtgtatgctcgt
accaataactacggtttcttagaaacgccattccgtaaagtggttgatggtcaagtaaca
gaagagatcgagtacttatcagcgattgaagagagcaataatatcattgctcaggcgaac
tcaaacttagatgaaaacttccgctttactgatacttatgtaacttgccgtcagcaaggt
gagtcaggtttattcaaaccggaagaagttcagtatatggacatctcaactcaacaagtg
gtttctgtggcggcagcgttaattccgttcttagagcacgacgatgcgaaccgtgcatta
atgggtgcgaacatgcaacgtcaggctgttccaacattgcgtgcggacaaaccgttagtc
ggtaccggtatggaaaaaccaatcgctcttgactcaggggttgcgattgtggcgaaacgt
ggtggtacgatccaatacgttgatgcttctcgtatcgtagtgaaagttaatgaagatgaa
acgatcccaggcgaagcaggtatcgacatctataacttaatcaaatacacccgttcaaac
caaaacacctgtatcaaccaagtaccttgtgtgaacttaggcgagccggttgctcgtggt
gagattttagcagatggtccttcaacagacttaggtgagctagcgttaggtcaaaatatc
cgtgtggcatttatgccttggaacggttataacttcgaagactcaatgttagtgtctgag
cgtgtggttcaagaagatcgcttcactacaatccacatccaagagttatcttgtgtggct
cgtgataccaaattaggttcagaagagatcacggcagatattccaaacgtaggtgaatct
gcattaagcaaattagacgaatccggtatcgtttacatcggtgcggaagtgaaaggtggc
gacatcttagtgggtaaagtaacccctaaaggtgaaacccaattaacaccggaagaaaaa
ctattacgtgcaatctttggtgaaaaagcttctgatgtgaaagattcttcacttcgtgta
ccaaacggtacttcaggtacggttattgatgttcaagtcttcacccgtgatggcgtagaa
aaagataaacgtgcgaaagagatcgaagagctgcaacttcgtgaagcgaaaaaagattta
tctgaagagttagagatcttagaagccggcttattcactcgtgttcgtaacctcttaatt
gaaggtggcgtaaaagagtctgcattagatggcgttgctcgtgaaaaatggttagaacaa
actttagaagacgaagcaaaacaaaatcaattagagcagttagcagagcagcacgaagag
ttacgcaaagagtttgaacgtaaacttgaaatcaaacgtaacaagatcattcaaggtgac
gatttagcaccgggcgtgttaaaagtggttaaagtttaccttgcggtgaaacgccaaatc
caaccgggtgataagatggcgggtcgtcacggtaacaaaggtgttatctcgaaaatcaac
ccagttgaagatatgccatacgatgaaaacggtcagccggtggaaatcgtattgaaccca
ctgggcgtaccatctcgtatgaacatcggtcagatcttagaaacccacttaggcttagcg
gctcgtggtatcggtgatcagatcaacaagatgatcaaagagcaacaagaagtagcgaaa
ctgcgtgaatatatgcaaaaagcgtacgatttaggtcacggctcccaagtggtagattta
agcacctttaccgatgaagaagtgatgcgtttagcacaaaacttacgcaaaggtttaccg
cttgcaacaccagtatttgatggtgctcacgagacggaaatcaaaggcttgttagaatta
ggtggcttaccgacttcaggtcaaattaccttattcgatggtcgcaccggtgagaaattc
gagcgtccggtaaccgtaggttatatgtatatgctcaaattgaaccacttggttgatgac
aaaatgcacgcacgttcaaccggttcttacagtcttgttactcaacaaccgttgggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaggtttgggcattagaagcatac
ggtgcagcctacaccttacaagaaatgctaacggtgaaatcagacgacgttaacggtcgt
acgaagatgtacaaaaacatcgtagacggcacacattatatggaaccgggaatcccagag
tcatttaatgtaatcaccaaagagattcgtgcattggcgatcgatatggagttggatgag
gcatag
DBGET
integrated database retrieval system
