Mannheimia sp. USDA-ARS-USMARC-1261: X781_2080
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Entry
X781_2080 CDS
T03026
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mvr
Mannheimia sp. USDA-ARS-USMARC-1261
Pathway
mvr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mvr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
X781_2080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvr03021
]
X781_2080
03400 DNA repair and recombination proteins [BR:
mvr03400
]
X781_2080
Enzymes [BR:
mvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
X781_2080
Transcription machinery [BR:
mvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
X781_2080
DNA repair and recombination proteins [BR:
mvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
X781_2080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AHG72358
LinkDB
All DBs
Position
215779..220062
Genome browser
AA seq
1427 aa
AA seq
DB search
MKDLVKFLKAQTKSSDDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQLLTEEQFMDAEERWGDEFEAK
MGAEGIQALLRDLDLEHQCEVLREELQETNSETKRKKITKRLKTLEAFLQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFRPFIYSKLESRGIASTIKAAKKMVEREDPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTREKVNGKGEGMYFLDPREAEKAYRT
GQAELHSRVKVRVTEYEKNETGEFVAKTELVDTTIGRAILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGLKESVVLADQIMYTGFAYAARSGASVGIDDMVIPEQKYSIIEAAEA
EVAEIQEQFNGGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTDEVLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIK
LTNAKFVTNKDGKIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKNDGAEVNAGEVVAN
WDPHTMPVISEVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALR
LVDSNGNDILIPGTDVPAQYFLPGKAIVTLDDGAEIAVGEALARIPQESVGTKDITGGLP
RVADLFEARKPKDPAILAEISGIVSFGKETKGKRRLVITPAEGEAYEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATITNAYDSEFLDGEQVEVARVKIANRKREAEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEAGI
AVAHEFEAPAAKENSFVTDADIEAEFEFVADDATQSLAALLNAGEEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagtgaagtttttaaaagcacaaacaaaatcaagcgatgattttgatgtg
attaaaattggtttagcatcaccggacaagattcgttcttggtcgttcggtgaagtaaaa
aaaccggaaacgattaactaccgtaccttcaaaccagagcgtgatggtttattctgtgca
cgtattttcggaccggtaaaagattacgagtgtttatgtggtaaatataaacgtttaaaa
catcgtggtgtaatttgtgaaaaatgcggtgttgaagtaacccaaactaaagtacgccgt
gagcgtatgggtcatatcgaattagcgtgtccggttgctcatatttggttcttaaaatca
cttccgtcccgtatcggcttaattttagatatgccgctacgtgatattgaacgtgtactt
tatttcgaaagctatgtagtaactgaaccgggtatgactgatttagagaaaaatcagcta
ttaaccgaagaacagtttatggatgctgaagagcgttggggcgatgagtttgaagcgaaa
atgggtgcagaaggtatccaagcattacttcgtgatttagatttagaacatcagtgcgaa
gtattgcgtgaagagttacaagaaactaactctgaaaccaaacgtaaaaaaatcactaaa
cgtttaaaaactttagaagcgttcttgcaatcaggcaacaaacctgagtggatggtaatg
acagtattaccggtattgccaccggatttacgtccgttagttccgcttgatggtggtcgt
tttgcaacttctgacttaaacgatttatatcgccgtgtaatcaaccgtaataaccgttta
aaacgcttattagacttagttgcaccggatatcatcgtgcgtaacgaaaaacgtatgtta
caagagtctgtagacgcgttattagacaacggtcgtcgtggtcgtgcgattaccggttct
aacaaacgtccgttaaaatctttggcagatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgtagactattcaggtcgttcagtaattaccgtaggtcca
tacttacgcttacaccaatgtggcttaccgaaaaaaatggcattggaattattccgtccg
tttatctactctaaattagaatctcgtggcattgcatcaactatcaaagctgcgaagaaa
atggtagaacgtgaagatccgatcgtatgggatattcttgcagaagttatccgtgagcat
ccgattcttctgaaccgtgcaccaacgcttcaccgtttaggtattcaagcgtttgaaccg
ttactgatcgaaggtaaagcaatccagttacacccacttgtgtgtgcggcgttcaacgcg
gacttcgatggagaccaaatggcggtacacgttccattaacacttgaagctcagttagaa
gctcgtgcgttaatgatgtctaccaacaacgtactttcaccggcaagtggtgatccgatt
atcgtaccatctcaagacgttgtattaggcttgtactatatgacccgtgagaaagtaaac
ggtaaaggcgaaggaatgtacttcctagacccacgtgaagcggaaaaagcttaccgtacc
ggtcaggcagaattacactctcgtgttaaagtgcgtgtaaccgaatatgagaaaaatgaa
acaggcgagtttgttgctaaaactgaattagtggataccactatcggtcgtgcaatctta
tggatgattgcaccaaaaggtatgccatttagcttattcaaccaaacattaggtaaaaaa
gcgatctcgaaattaattaacgagagctaccgtcgtttaggcttgaaagagtctgtggtt
ttagctgaccaaattatgtacacaggtttcgcctacgcggcacgttcaggtgcatcggtt
ggtattgatgatatggttatcccagaacaaaaatactcaatcattgaagcagctgaagca
gaagttgctgaaattcaagagcaattcaatggcggtctagtaactgccggtgagcgttat
aacaaagtaatcgatatttgggcggcggcaaacgaacgtgttgcaaaagcgatgatggaa
aacctttcaacggaagaagtcatcaaccgtgaaggtaatcctgaaaaacaagcatcattc
aacagcatctttatgatggcagactccggtgctcgtggttctgcggcacagattcgtcag
ttagcgggtatgcgtggcttgatggcacgtccggatggttcgattatcgaaacgccgatc
acggcaaacttccgtgaaggcttgaacgttcttcagtactttatttctacccacggtgca
cgtaagggtcttgcggatacggcattaaaaacagcgaactcaggttacttaacccgtcgt
ttagtggatgtagcacaagatttagtgatcatcgaagatgactgtggtacacacgaaggt
atcgtgatgaccccattaatcgagggtggtgatgtaaaagaagctctgcgtgatcgtgta
ttaggtcgtgtggtagcggaagatgtgttaaaaccgggtacagatgaagtattaattcca
cgtaataccttattagatgaaaaatggtgtgatgtggtggatcgtgagtcagttgatgtg
atcaaagtacgttcggtggtaacttgtgatacagacttcggtgtgtgtgcaaaatgttac
ggacgtgatctcgcacgtggacacttaattaatcaaggtgaagcagtgggtgttattgcg
gcacaatctatcggtgagccgggtacacagttaacgatgcgtacgttccatatcggtggt
gcggcatctgcggcagcgaaagaatctagcattcaagtgaaaaatgcaggtacgattaag
cttactaacgcgaaattcgtaactaacaaagacggcaaaatcgtattaacttcacgtaac
acggaattaactgttatcgatacctttggtcgtaccaaagaaaactacaaagtgccttac
ggtgcagtgttatcgaaaaatgacggtgcagaagtaaatgcaggtgaagtagtagcaaac
tgggatccgcacacaatgccggttatctcagaggtatcaggtcgtatccaatttagcgac
atcgttgatggcttaacggtaactcgtcaaacggacgaattaaccggtttatcatcaatc
gtagtgcaagatgtgggtgagcgtgcaactgcaggtaaagatttacgtccggcactacgt
ttagttgatagcaacggtaacgatatcttaattccgggtacagacgttccggcacaatac
ttcttaccgggtaaagcgattgtaaccttagatgacggtgcagaaatcgcggtgggtgaa
gcgttagctcgtattccacaagaatctgtaggaacgaaagatattaccggtggtcttcca
cgcgtagcagatttatttgaagcacgtaaaccgaaagatccggcaatcttggcagaaatt
tcaggtatcgtatcattcggtaaagaaaccaagggtaaacgccgcttggtaattactccg
gctgaaggcgaagcgtacgaagaaatgattccaaaatggcgtcaattaaacgtattcgaa
ggcgagatggtacaacgtggtgatgtaatctctgatggtgcagaaactccacacgatatc
ttgcgtttacgtggcgtacacgcagtaacagactacattgtaaacgaagtacaagaagtt
taccgcttacaaggggtaaaaattaacgataaacacattgaagttatcgttcgccaaatg
ttacgtaaagcaaccattaccaacgcttacgactctgaattcctagacggagaacaagtc
gaagtagctcgtgtgaaaattgctaaccgcaaacgtgaagcagaaggcaaaccacttgtt
gagtttgaacgtgaattgcttggtattaccaaagcatcacttgcaacagaaagttttatt
tcggcggcatcgttccaagaaaccactcgtgtgcttactgaagcagcagtggcaggtaaa
caagatgagttacgtggcttaaaagaaaatgtaatcgttggtcgcttaatcccggcaggt
actggttttgcttaccaccaagctcgtgcgaaaaaacgtgcacaacttgaagcaggcatc
gcagtagcccatgagtttgaagctccagctgcaaaagaaaactcatttgttactgatgca
gacatcgaagctgaatttgaattcgttgcagacgatgcaactcaaagtttagcagcgttg
ttaaatgcgggtgaggaagagtaa
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integrated database retrieval system
